data_6LHI # _model_server_result.job_id d4i7PwLHlIjGlXne6rdqqw _model_server_result.datetime_utc '2024-11-15 16:48:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lhi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":704}' # _entry.id 6LHI # _exptl.entry_id 6LHI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LHI _cell.length_a 56.308 _cell.length_b 154.488 _cell.length_c 163.939 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 I N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 295 n n PA O2A NDP sing 296 n n PA O5B NDP sing 297 n n PA O3 NDP sing 298 n n O2A HOA2 NDP sing 299 n n O5B C5B NDP sing 300 n n C5B C4B NDP sing 301 n n C5B H51A NDP sing 302 n n C5B H52A NDP sing 303 n n C4B O4B NDP sing 304 n n C4B C3B NDP sing 305 n n C4B H4B NDP sing 306 n n O4B C1B NDP sing 307 n n C3B O3B NDP sing 308 n n C3B C2B NDP sing 309 n n C3B H3B NDP sing 310 n n O3B HO3A NDP sing 311 n n C2B O2B NDP sing 312 n n C2B C1B NDP sing 313 n n C2B H2B NDP sing 314 n n O2B P2B NDP sing 315 n n C1B N9A NDP sing 316 n n C1B H1B NDP sing 317 n n N9A C8A NDP sing 318 n y N9A C4A NDP sing 319 n y C8A N7A NDP doub 320 n y C8A H8A NDP sing 321 n n N7A C5A NDP sing 322 n y C5A C6A NDP sing 323 n y C5A C4A NDP doub 324 n y C6A N6A NDP sing 325 n n C6A N1A NDP doub 326 n y N6A H61A NDP sing 327 n n N6A H62A NDP sing 328 n n N1A C2A NDP sing 329 n y C2A N3A NDP doub 330 n y C2A H2A NDP sing 331 n n N3A C4A NDP sing 332 n y O3 PN NDP sing 333 n n PN O1N NDP doub 334 n n PN O2N NDP sing 335 n n PN O5D NDP sing 336 n n O2N H21N NDP sing 337 n n O5D C5D NDP sing 338 n n C5D C4D NDP sing 339 n n C5D H51N NDP sing 340 n n C5D H52N NDP sing 341 n n C4D O4D NDP sing 342 n n C4D C3D NDP sing 343 n n C4D H4D NDP sing 344 n n O4D C1D NDP sing 345 n n C3D O3D NDP sing 346 n n C3D C2D NDP sing 347 n n C3D H3D NDP sing 348 n n O3D HO3N NDP sing 349 n n C2D O2D NDP sing 350 n n C2D C1D NDP sing 351 n n C2D H2D NDP sing 352 n n O2D HO2N NDP sing 353 n n C1D N1N NDP sing 354 n n C1D H1D NDP sing 355 n n N1N C2N NDP sing 356 n n N1N C6N NDP sing 357 n n C2N C3N NDP doub 358 n n C2N H2N NDP sing 359 n n C3N C7N NDP sing 360 n n C3N C4N NDP sing 361 n n C7N O7N NDP doub 362 n n C7N N7N NDP sing 363 n n N7N H71N NDP sing 364 n n N7N H72N NDP sing 365 n n C4N C5N NDP sing 366 n n C4N H41N NDP sing 367 n n C4N H42N NDP sing 368 n n C5N C6N NDP doub 369 n n C5N H5N NDP sing 370 n n C6N H6N NDP sing 371 n n P2B O1X NDP doub 372 n n P2B O2X NDP sing 373 n n P2B O3X NDP sing 374 n n O2X HOP2 NDP sing 375 n n O3X HOP3 NDP sing 376 n n # _atom_sites.entry_id 6LHI _atom_sites.fract_transf_matrix[1][1] 0.017759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006473 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MET A 1 701 606 MET MET . D 3 UMP A 1 702 801 UMP UMP . E 4 E9X A 1 703 901 E9X DRG . F 5 NDP A 1 704 1001 NDP NDP . G 3 UMP B 1 801 801 UMP UMP . H 4 E9X B 1 802 901 E9X DRG . I 5 NDP B 1 803 1001 NDP NDP . J 6 HOH A 1 801 65 HOH HOH . J 6 HOH A 2 802 71 HOH HOH . J 6 HOH A 3 803 28 HOH HOH . J 6 HOH A 4 804 91 HOH HOH . J 6 HOH A 5 805 57 HOH HOH . J 6 HOH A 6 806 17 HOH HOH . J 6 HOH A 7 807 92 HOH HOH . J 6 HOH A 8 808 24 HOH HOH . J 6 HOH A 9 809 63 HOH HOH . J 6 HOH A 10 810 32 HOH HOH . J 6 HOH A 11 811 70 HOH HOH . J 6 HOH A 12 812 38 HOH HOH . J 6 HOH A 13 813 23 HOH HOH . J 6 HOH A 14 814 8 HOH HOH . J 6 HOH A 15 815 22 HOH HOH . J 6 HOH A 16 816 80 HOH HOH . J 6 HOH A 17 817 2 HOH HOH . J 6 HOH A 18 818 88 HOH HOH . J 6 HOH A 19 819 93 HOH HOH . J 6 HOH A 20 820 25 HOH HOH . J 6 HOH A 21 821 50 HOH HOH . J 6 HOH A 22 822 89 HOH HOH . J 6 HOH A 23 823 12 HOH HOH . J 6 HOH A 24 824 68 HOH HOH . J 6 HOH A 25 825 59 HOH HOH . J 6 HOH A 26 826 90 HOH HOH . J 6 HOH A 27 827 7 HOH HOH . J 6 HOH A 28 828 31 HOH HOH . J 6 HOH A 29 829 5 HOH HOH . J 6 HOH A 30 830 61 HOH HOH . J 6 HOH A 31 831 3 HOH HOH . J 6 HOH A 32 832 66 HOH HOH . J 6 HOH A 33 833 94 HOH HOH . J 6 HOH A 34 834 78 HOH HOH . J 6 HOH A 35 835 64 HOH HOH . J 6 HOH A 36 836 87 HOH HOH . J 6 HOH A 37 837 49 HOH HOH . J 6 HOH A 38 838 11 HOH HOH . J 6 HOH A 39 839 16 HOH HOH . J 6 HOH A 40 840 52 HOH HOH . J 6 HOH A 41 841 79 HOH HOH . J 6 HOH A 42 842 54 HOH HOH . J 6 HOH A 43 843 47 HOH HOH . J 6 HOH A 44 844 19 HOH HOH . J 6 HOH A 45 845 15 HOH HOH . J 6 HOH A 46 846 10 HOH HOH . J 6 HOH A 47 847 67 HOH HOH . K 6 HOH B 1 901 39 HOH HOH . K 6 HOH B 2 902 34 HOH HOH . K 6 HOH B 3 903 42 HOH HOH . K 6 HOH B 4 904 44 HOH HOH . K 6 HOH B 5 905 1 HOH HOH . K 6 HOH B 6 906 58 HOH HOH . K 6 HOH B 7 907 75 HOH HOH . K 6 HOH B 8 908 76 HOH HOH . K 6 HOH B 9 909 20 HOH HOH . K 6 HOH B 10 910 18 HOH HOH . K 6 HOH B 11 911 96 HOH HOH . K 6 HOH B 12 912 48 HOH HOH . K 6 HOH B 13 913 83 HOH HOH . K 6 HOH B 14 914 74 HOH HOH . K 6 HOH B 15 915 84 HOH HOH . K 6 HOH B 16 916 9 HOH HOH . K 6 HOH B 17 917 46 HOH HOH . K 6 HOH B 18 918 35 HOH HOH . K 6 HOH B 19 919 69 HOH HOH . K 6 HOH B 20 920 43 HOH HOH . K 6 HOH B 21 921 13 HOH HOH . K 6 HOH B 22 922 4 HOH HOH . K 6 HOH B 23 923 72 HOH HOH . K 6 HOH B 24 924 40 HOH HOH . K 6 HOH B 25 925 95 HOH HOH . K 6 HOH B 26 926 6 HOH HOH . K 6 HOH B 27 927 41 HOH HOH . K 6 HOH B 28 928 81 HOH HOH . K 6 HOH B 29 929 14 HOH HOH . K 6 HOH B 30 930 29 HOH HOH . K 6 HOH B 31 931 86 HOH HOH . K 6 HOH B 32 932 56 HOH HOH . K 6 HOH B 33 933 82 HOH HOH . K 6 HOH B 34 934 53 HOH HOH . K 6 HOH B 35 935 73 HOH HOH . K 6 HOH B 36 936 21 HOH HOH . K 6 HOH B 37 937 55 HOH HOH . K 6 HOH B 38 938 77 HOH HOH . K 6 HOH B 39 939 30 HOH HOH . K 6 HOH B 40 940 62 HOH HOH . K 6 HOH B 41 941 36 HOH HOH . K 6 HOH B 42 942 51 HOH HOH . K 6 HOH B 43 943 37 HOH HOH . K 6 HOH B 44 944 26 HOH HOH . K 6 HOH B 45 945 27 HOH HOH . K 6 HOH B 46 946 45 HOH HOH . K 6 HOH B 47 947 60 HOH HOH . K 6 HOH B 48 948 33 HOH HOH . K 6 HOH B 49 949 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . F 5 -5.694 -4.382 68.721 1 23.88 ? PA NDP 704 A 1 HETATM 2 O O1A NDP . . . F 5 -6.714 -3.57 67.997 1 22.6 ? O1A NDP 704 A 1 HETATM 3 O O2A NDP . . . F 5 -4.431 -4.715 68.043 1 24.64 ? O2A NDP 704 A 1 HETATM 4 O O5B NDP . . . F 5 -5.32 -3.75 70.146 1 29.14 ? O5B NDP 704 A 1 HETATM 5 C C5B NDP . . . F 5 -6.371 -3.544 71.134 1 30.1 ? C5B NDP 704 A 1 HETATM 6 C C4B NDP . . . F 5 -5.795 -2.829 72.331 1 28.36 ? C4B NDP 704 A 1 HETATM 7 O O4B NDP . . . F 5 -5.417 -1.507 71.896 1 28.67 ? O4B NDP 704 A 1 HETATM 8 C C3B NDP . . . F 5 -6.739 -2.557 73.512 1 28.16 ? C3B NDP 704 A 1 HETATM 9 O O3B NDP . . . F 5 -6.792 -3.628 74.44 1 27.59 ? O3B NDP 704 A 1 HETATM 10 C C2B NDP . . . F 5 -6.06 -1.359 74.148 1 27.52 ? C2B NDP 704 A 1 HETATM 11 O O2B NDP . . . F 5 -4.814 -1.647 74.78 1 29.09 ? O2B NDP 704 A 1 HETATM 12 C C1B NDP . . . F 5 -5.681 -0.569 72.915 1 25.93 ? C1B NDP 704 A 1 HETATM 13 N N9A NDP . . . F 5 -6.692 0.347 72.436 1 23.17 ? N9A NDP 704 A 1 HETATM 14 C C8A NDP . . . F 5 -7.458 0.223 71.31 1 23.76 ? C8A NDP 704 A 1 HETATM 15 N N7A NDP . . . F 5 -8.212 1.265 71.073 1 21.54 ? N7A NDP 704 A 1 HETATM 16 C C5A NDP . . . F 5 -7.923 2.131 72.11 1 24.14 ? C5A NDP 704 A 1 HETATM 17 C C6A NDP . . . F 5 -8.403 3.419 72.431 1 24.11 ? C6A NDP 704 A 1 HETATM 18 N N6A NDP . . . F 5 -9.321 4.07 71.737 1 25.97 ? N6A NDP 704 A 1 HETATM 19 N N1A NDP . . . F 5 -7.873 4.027 73.507 1 23.83 ? N1A NDP 704 A 1 HETATM 20 C C2A NDP . . . F 5 -6.929 3.362 74.202 1 26.72 ? C2A NDP 704 A 1 HETATM 21 N N3A NDP . . . F 5 -6.412 2.149 74.013 1 23.99 ? N3A NDP 704 A 1 HETATM 22 C C4A NDP . . . F 5 -6.965 1.579 72.94 1 23.23 ? C4A NDP 704 A 1 HETATM 23 O O3 NDP . . . F 5 -6.382 -5.74 69.236 1 24.32 ? O3 NDP 704 A 1 HETATM 24 P PN NDP . . . F 5 -7.174 -6.945 68.537 1 23.09 ? PN NDP 704 A 1 HETATM 25 O O1N NDP . . . F 5 -8.511 -6.453 68.086 1 22.96 ? O1N NDP 704 A 1 HETATM 26 O O2N NDP . . . F 5 -7.072 -8.162 69.413 1 22.41 ? O2N NDP 704 A 1 HETATM 27 O O5D NDP . . . F 5 -6.248 -7.138 67.25 1 25.37 ? O5D NDP 704 A 1 HETATM 28 C C5D NDP . . . F 5 -4.942 -7.795 67.307 1 24.54 ? C5D NDP 704 A 1 HETATM 29 C C4D NDP . . . F 5 -4.954 -8.898 66.279 1 26.56 ? C4D NDP 704 A 1 HETATM 30 O O4D NDP . . . F 5 -4.967 -8.309 64.951 1 26.01 ? O4D NDP 704 A 1 HETATM 31 C C3D NDP . . . F 5 -3.747 -9.839 66.276 1 27.68 ? C3D NDP 704 A 1 HETATM 32 O O3D NDP . . . F 5 -4.199 -11.149 65.97 1 29.29 ? O3D NDP 704 A 1 HETATM 33 C C2D NDP . . . F 5 -2.863 -9.152 65.222 1 27.44 ? C2D NDP 704 A 1 HETATM 34 O O2D NDP . . . F 5 -1.746 -9.923 64.801 1 27.25 ? O2D NDP 704 A 1 HETATM 35 C C1D NDP . . . F 5 -3.937 -8.868 64.177 1 25.67 ? C1D NDP 704 A 1 HETATM 36 N N1N NDP . . . F 5 -3.572 -7.866 63.143 1 25.77 ? N1N NDP 704 A 1 HETATM 37 C C2N NDP . . . F 5 -3.836 -8.121 61.827 1 25.03 ? C2N NDP 704 A 1 HETATM 38 C C3N NDP . . . F 5 -3.7 -7.165 60.849 1 24.47 ? C3N NDP 704 A 1 HETATM 39 C C7N NDP . . . F 5 -3.938 -7.57 59.455 1 25.38 ? C7N NDP 704 A 1 HETATM 40 O O7N NDP . . . F 5 -3.889 -6.706 58.584 1 26.93 ? O7N NDP 704 A 1 HETATM 41 N N7N NDP . . . F 5 -4.247 -8.834 59.176 1 24.4 ? N7N NDP 704 A 1 HETATM 42 C C4N NDP . . . F 5 -3.354 -5.773 61.234 1 25.01 ? C4N NDP 704 A 1 HETATM 43 C C5N NDP . . . F 5 -3.172 -5.605 62.698 1 26.46 ? C5N NDP 704 A 1 HETATM 44 C C6N NDP . . . F 5 -3.011 -6.657 63.479 1 26.97 ? C6N NDP 704 A 1 HETATM 45 P P2B NDP . . . F 5 -4.85 -1.999 76.356 1 30.16 ? P2B NDP 704 A 1 HETATM 46 O O1X NDP . . . F 5 -3.414 -2.1 76.899 1 26.27 ? O1X NDP 704 A 1 HETATM 47 O O2X NDP . . . F 5 -5.62 -0.856 77.043 1 27.59 ? O2X NDP 704 A 1 HETATM 48 O O3X NDP . . . F 5 -5.548 -3.35 76.387 1 24.85 ? O3X NDP 704 A 1 HETATM 49 H H51A NDP . . . F 5 -7.169 -2.94 70.698 1 30.1 ? H51A NDP 704 A 1 HETATM 50 H H52A NDP . . . F 5 -6.774 -4.51 71.446 1 30.1 ? H52A NDP 704 A 1 HETATM 51 H H4B NDP . . . F 5 -4.937 -3.408 72.7 1 28.36 ? H4B NDP 704 A 1 HETATM 52 H H3B NDP . . . F 5 -7.747 -2.255 73.195 1 28.16 ? H3B NDP 704 A 1 HETATM 53 H HO3A NDP . . . F 5 -7.226 -4.389 74.03 0 27.59 ? HO3A NDP 704 A 1 HETATM 54 H H2B NDP . . . F 5 -6.77 -0.976 74.895 1 27.52 ? H2B NDP 704 A 1 HETATM 55 H H1B NDP . . . F 5 -4.782 0.02 73.144 1 25.93 ? H1B NDP 704 A 1 HETATM 56 H H8A NDP . . . F 5 -7.406 -0.676 70.708 1 23.76 ? H8A NDP 704 A 1 HETATM 57 H H61A NDP . . . F 5 -9.715 3.664 70.969 1 25.97 ? H61A NDP 704 A 1 HETATM 58 H H2A NDP . . . F 5 -6.593 3.97 75.033 1 26.72 ? H2A NDP 704 A 1 HETATM 59 H H51N NDP . . . F 5 -4.783 -8.203 68.307 1 24.54 ? H51N NDP 704 A 1 HETATM 60 H H52N NDP . . . F 5 -4.159 -7.068 67.082 1 24.54 ? H52N NDP 704 A 1 HETATM 61 H H4D NDP . . . F 5 -5.828 -9.537 66.468 1 26.56 ? H4D NDP 704 A 1 HETATM 62 H H3D NDP . . . F 5 -3.303 -9.836 67.281 1 27.68 ? H3D NDP 704 A 1 HETATM 63 H HO3N NDP . . . F 5 -3.447 -11.756 65.964 0 29.29 ? HO3N NDP 704 A 1 HETATM 64 H H2D NDP . . . F 5 -2.428 -8.249 65.672 1 27.44 ? H2D NDP 704 A 1 HETATM 65 H HO2N NDP . . . F 5 -1.242 -9.427 64.142 0 27.25 ? HO2N NDP 704 A 1 HETATM 66 H H1D NDP . . . F 5 -4.225 -9.82 63.709 1 25.67 ? H1D NDP 704 A 1 HETATM 67 H H2N NDP . . . F 5 -4.166 -9.106 61.522 1 25.03 ? H2N NDP 704 A 1 HETATM 68 H H71N NDP . . . F 5 -4.402 -9.099 58.273 1 24.4 ? H71N NDP 704 A 1 HETATM 69 H H41N NDP . . . F 5 -2.43 -5.507 60.72 1 25.01 ? H41N NDP 704 A 1 HETATM 70 H H42N NDP . . . F 5 -4.16 -5.124 60.891 1 25.01 ? H42N NDP 704 A 1 HETATM 71 H H5N NDP . . . F 5 -3.172 -4.612 63.123 1 26.46 ? H5N NDP 704 A 1 HETATM 72 H H6N NDP . . . F 5 -2.434 -6.563 64.387 1 26.97 ? H6N NDP 704 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 72 #