data_6LHT
#
_model_server_result.job_id            tBYN3zgssbxadNXak04Sqw 
_model_server_result.datetime_utc      '2024-10-19 05:21:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lht 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    6LHT 
#
_exptl.entry_id    6LHT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              299.492 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPHINGOSINE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6LHT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LHT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 94 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C18 H37 N O2' 
_chem_comp.formula_weight    299.492 
_chem_comp.id                SPH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPHINGOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6LHT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 4 SPH A 1 301 301 SPH SPH . 
I 4 SPH C 1 301 301 SPH SPH . 
J 4 SPH D 1 301 301 SPH SPH . 
K 4 SPH E 1 301 301 SPH SPH . 
L 4 SPH B 1 301 301 SPH SPH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SPH . . . K 4 117.918 65.646 64.456 1 63.91 ? C1 SPH 301 E 1 
HETATM 2 O O1 SPH . . . K 4 118.49 64.36 64.521 1 63.91 ? O1 SPH 301 E 1 
HETATM 3 C C2 SPH . . . K 4 117.267 65.85 63.093 1 63.91 ? C2 SPH 301 E 1 
HETATM 4 N N2 SPH . . . K 4 117.348 64.638 62.303 1 63.91 ? N2 SPH 301 E 1 
HETATM 5 C C3 SPH . . . K 4 115.819 66.272 63.262 1 63.91 ? C3 SPH 301 E 1 
HETATM 6 O O3 SPH . . . K 4 115.765 67.149 64.361 1 63.91 ? O3 SPH 301 E 1 
HETATM 7 C C4 SPH . . . K 4 115.311 66.975 62.038 1 63.91 ? C4 SPH 301 E 1 
HETATM 8 C C5 SPH . . . K 4 116.221 67.691 61.137 1 63.91 ? C5 SPH 301 E 1 
HETATM 9 C C6 SPH . . . K 4 115.85 69.034 60.551 1 63.91 ? C6 SPH 301 E 1 
HETATM 10 C C7 SPH . . . K 4 114.337 69.209 60.465 1 63.91 ? C7 SPH 301 E 1 
HETATM 11 C C8 SPH . . . K 4 113.955 70.668 60.219 1 63.91 ? C8 SPH 301 E 1 
HETATM 12 C C9 SPH . . . K 4 114.653 71.606 61.201 1 63.91 ? C9 SPH 301 E 1 
HETATM 13 C C10 SPH . . . K 4 113.867 72.896 61.403 1 63.91 ? C10 SPH 301 E 1 
HETATM 14 C C11 SPH . . . K 4 114.784 73.964 61.995 1 63.91 ? C11 SPH 301 E 1 
HETATM 15 C C12 SPH . . . K 4 114.09 75.322 62.053 1 63.91 ? C12 SPH 301 E 1 
HETATM 16 C C13 SPH . . . K 4 113.276 75.463 63.331 1 63.91 ? C13 SPH 301 E 1 
HETATM 17 C C14 SPH . . . K 4 113.315 76.893 63.842 1 63.91 ? C14 SPH 301 E 1 
HETATM 18 C C15 SPH . . . K 4 112.016 77.257 64.547 1 63.91 ? C15 SPH 301 E 1 
HETATM 19 C C16 SPH . . . K 4 112.07 78.684 65.087 1 63.91 ? C16 SPH 301 E 1 
HETATM 20 C C17 SPH . . . K 4 111.869 79.713 63.979 1 63.91 ? C17 SPH 301 E 1 
HETATM 21 C C18 SPH . . . K 4 111.787 81.121 64.554 1 63.91 ? C18 SPH 301 E 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#