data_6LI1 # _model_server_result.job_id CJCPVkwshywOjYFxN20Vgg _model_server_result.datetime_utc '2024-11-21 13:58:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6li1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 6LI1 # _exptl.entry_id 6LI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LI1 _cell.length_a 66.648 _cell.length_b 79.891 _cell.length_c 148.304 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 27 1_555 A SG CYS 25 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 99 A CYS 114 1_555 A SG CYS 178 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6LI1 _atom_sites.fract_transf_matrix[1][1] 0.015004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 1201 401 OLC OLC . C 3 FMN A 1 1202 1201 FMN FMN . D 4 PEG A 1 1203 1301 PEG PEG . E 2 OLC A 1 1204 1501 OLC OLC . F 5 PGE A 1 1205 1601 PGE PGE . G 6 HOH A 1 1301 5 HOH HOH . G 6 HOH A 2 1302 1 HOH HOH . G 6 HOH A 3 1303 6 HOH HOH . G 6 HOH A 4 1304 7 HOH HOH . G 6 HOH A 5 1305 4 HOH HOH . G 6 HOH A 6 1306 8 HOH HOH . G 6 HOH A 7 1307 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 29.986 -17.271 5.741 1 46.25 ? N1 FMN 1202 A 1 HETATM 2 C C2 FMN . . . C 3 29.731 -17.333 4.418 1 46.7 ? C2 FMN 1202 A 1 HETATM 3 O O2 FMN . . . C 3 29.753 -16.259 3.769 1 57.62 ? O2 FMN 1202 A 1 HETATM 4 N N3 FMN . . . C 3 29.481 -18.49 3.779 1 40.56 ? N3 FMN 1202 A 1 HETATM 5 C C4 FMN . . . C 3 29.459 -19.671 4.401 1 43.37 ? C4 FMN 1202 A 1 HETATM 6 O O4 FMN . . . C 3 29.223 -20.75 3.796 1 65.99 ? O4 FMN 1202 A 1 HETATM 7 C C4A FMN . . . C 3 29.727 -19.685 5.839 1 35.94 ? C4A FMN 1202 A 1 HETATM 8 N N5 FMN . . . C 3 29.711 -20.836 6.525 1 46.67 ? N5 FMN 1202 A 1 HETATM 9 C C5A FMN . . . C 3 29.966 -20.837 7.879 1 49.75 ? C5A FMN 1202 A 1 HETATM 10 C C6 FMN . . . C 3 29.989 -22.062 8.536 1 43.25 ? C6 FMN 1202 A 1 HETATM 11 C C7 FMN . . . C 3 30.291 -22.131 9.872 1 43.3 ? C7 FMN 1202 A 1 HETATM 12 C C7M FMN . . . C 3 30.274 -23.48 10.569 1 59.96 ? C7M FMN 1202 A 1 HETATM 13 C C8 FMN . . . C 3 30.554 -20.89 10.628 1 37.29 ? C8 FMN 1202 A 1 HETATM 14 C C8M FMN . . . C 3 30.837 -20.992 12.08 1 38.64 ? C8M FMN 1202 A 1 HETATM 15 C C9 FMN . . . C 3 30.562 -19.667 9.976 1 51.69 ? C9 FMN 1202 A 1 HETATM 16 C C9A FMN . . . C 3 30.283 -19.581 8.597 1 43.72 ? C9A FMN 1202 A 1 HETATM 17 N N10 FMN . . . C 3 30.261 -18.361 7.869 1 38.47 ? N10 FMN 1202 A 1 HETATM 18 C C10 FMN . . . C 3 30.015 -18.396 6.493 1 37.49 ? C10 FMN 1202 A 1 HETATM 19 C C1' FMN . . . C 3 30.54 -17.058 8.491 1 53.28 ? C1' FMN 1202 A 1 HETATM 20 C C2' FMN . . . C 3 29.28 -16.408 9.049 1 49.71 ? C2' FMN 1202 A 1 HETATM 21 O O2' FMN . . . C 3 28.321 -16.24 8.006 1 55.4 ? O2' FMN 1202 A 1 HETATM 22 C C3' FMN . . . C 3 29.675 -15.067 9.665 1 52.98 ? C3' FMN 1202 A 1 HETATM 23 O O3' FMN . . . C 3 30.355 -15.31 10.907 1 54.7 ? O3' FMN 1202 A 1 HETATM 24 C C4' FMN . . . C 3 28.526 -14.088 9.868 1 46.7 ? C4' FMN 1202 A 1 HETATM 25 O O4' FMN . . . C 3 29.087 -12.783 10.045 1 53.22 ? O4' FMN 1202 A 1 HETATM 26 C C5' FMN . . . C 3 27.638 -14.448 11.048 1 40.75 ? C5' FMN 1202 A 1 HETATM 27 O O5' FMN . . . C 3 26.586 -13.504 11.097 1 56.69 ? O5' FMN 1202 A 1 HETATM 28 P P FMN . . . C 3 25.471 -13.524 12.253 1 55.09 ? P FMN 1202 A 1 HETATM 29 O O1P FMN . . . C 3 24.342 -12.734 11.628 1 49.58 ? O1P FMN 1202 A 1 HETATM 30 O O2P FMN . . . C 3 25.228 -14.964 12.554 1 36.35 ? O2P FMN 1202 A 1 HETATM 31 O O3P FMN . . . C 3 26.123 -12.752 13.346 1 51.88 ? O3P FMN 1202 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #