data_6LI1 # _model_server_result.job_id wS-eSvnRgcfFD-le_nqONQ _model_server_result.datetime_utc '2024-11-21 14:24:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6li1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1204}' # _entry.id 6LI1 # _exptl.entry_id 6LI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LI1 _cell.length_a 66.648 _cell.length_b 79.891 _cell.length_c 148.304 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 27 1_555 A SG CYS 25 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 99 A CYS 114 1_555 A SG CYS 178 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 291 n n C10 C9 OLC doub 292 n n C10 C11 OLC sing 293 n n C9 C8 OLC sing 294 n n C17 C16 OLC sing 295 z n C11 C12 OLC sing 296 n n C8 C7 OLC sing 297 n n C24 C22 OLC sing 298 n n C24 O25 OLC sing 299 n n C16 C15 OLC sing 300 n n C12 C13 OLC sing 301 n n C7 C6 OLC sing 302 n n C15 C14 OLC sing 303 n n C13 C14 OLC sing 304 n n C6 C5 OLC sing 305 n n C5 C4 OLC sing 306 n n C4 C3 OLC sing 307 n n C3 C2 OLC sing 308 n n C2 C1 OLC sing 309 n n C21 C22 OLC sing 310 n n C21 O20 OLC sing 311 n n C1 O19 OLC doub 312 n n C1 O20 OLC sing 313 n n C22 O23 OLC sing 314 n n C18 H18 OLC sing 315 n n C18 H18A OLC sing 316 n n C18 H18B OLC sing 317 n n C10 H10 OLC sing 318 n n C9 H9 OLC sing 319 n n C17 H17 OLC sing 320 n n C17 H17A OLC sing 321 n n C11 H11 OLC sing 322 n n C11 H11A OLC sing 323 n n C8 H8 OLC sing 324 n n C8 H8A OLC sing 325 n n C24 H24 OLC sing 326 n n C24 H24A OLC sing 327 n n C16 H16 OLC sing 328 n n C16 H16A OLC sing 329 n n C12 H12 OLC sing 330 n n C12 H12A OLC sing 331 n n C7 H7 OLC sing 332 n n C7 H7A OLC sing 333 n n C15 H15 OLC sing 334 n n C15 H15A OLC sing 335 n n C13 H13 OLC sing 336 n n C13 H13A OLC sing 337 n n C6 H6 OLC sing 338 n n C6 H6A OLC sing 339 n n C14 H14 OLC sing 340 n n C14 H14A OLC sing 341 n n C5 H5 OLC sing 342 n n C5 H5A OLC sing 343 n n C4 H4 OLC sing 344 n n C4 H4A OLC sing 345 n n C3 H3 OLC sing 346 n n C3 H3A OLC sing 347 n n C2 H2 OLC sing 348 n n C2 H2A OLC sing 349 n n C21 H21 OLC sing 350 n n C21 H21A OLC sing 351 n n C22 H22 OLC sing 352 n n O25 HO25 OLC sing 353 n n O23 HO23 OLC sing 354 n n # _atom_sites.entry_id 6LI1 _atom_sites.fract_transf_matrix[1][1] 0.015004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 1201 401 OLC OLC . C 3 FMN A 1 1202 1201 FMN FMN . D 4 PEG A 1 1203 1301 PEG PEG . E 2 OLC A 1 1204 1501 OLC OLC . F 5 PGE A 1 1205 1601 PGE PGE . G 6 HOH A 1 1301 5 HOH HOH . G 6 HOH A 2 1302 1 HOH HOH . G 6 HOH A 3 1303 6 HOH HOH . G 6 HOH A 4 1304 7 HOH HOH . G 6 HOH A 5 1305 4 HOH HOH . G 6 HOH A 6 1306 8 HOH HOH . G 6 HOH A 7 1307 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . E 2 17.328 2.056 -16.016 1 123.62 ? C24 OLC 1204 A 1 HETATM 2 C C5 OLC . . . E 2 18.444 -1.36 -24.924 1 58.67 ? C5 OLC 1204 A 1 HETATM 3 C C4 OLC . . . E 2 19.259 -1.19 -23.635 1 81.35 ? C4 OLC 1204 A 1 HETATM 4 C C3 OLC . . . E 2 18.559 -0.38 -22.536 1 74.61 ? C3 OLC 1204 A 1 HETATM 5 C C2 OLC . . . E 2 19.327 -0.439 -21.201 1 81.74 ? C2 OLC 1204 A 1 HETATM 6 C C21 OLC . . . E 2 17.875 0.194 -17.598 1 129.51 ? C21 OLC 1204 A 1 HETATM 7 C C1 OLC . . . E 2 18.386 -0.133 -20.041 1 113.2 ? C1 OLC 1204 A 1 HETATM 8 C C22 OLC . . . E 2 18.408 1.059 -16.451 1 135.86 ? C22 OLC 1204 A 1 HETATM 9 O O19 OLC . . . E 2 17.197 0.035 -20.253 1 124.69 ? O19 OLC 1204 A 1 HETATM 10 O O25 OLC . . . E 2 17.814 3.017 -15.071 1 100.47 ? O25 OLC 1204 A 1 HETATM 11 O O23 OLC . . . E 2 18.749 0.193 -15.362 1 123.66 ? O23 OLC 1204 A 1 HETATM 12 O O20 OLC . . . E 2 18.828 -0.013 -18.657 1 124.89 ? O20 OLC 1204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #