data_6LI1 # _model_server_result.job_id atdbJ9fki9W2AEJmK1Qo8g _model_server_result.datetime_utc '2024-11-23 10:02:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6li1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1205}' # _entry.id 6LI1 # _exptl.entry_id 6LI1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LI1 _cell.length_a 66.648 _cell.length_b 79.891 _cell.length_c 148.304 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 27 1_555 A SG CYS 25 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 99 A CYS 114 1_555 A SG CYS 178 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 371 n n C1 C2 PGE sing 372 n n C1 H1 PGE sing 373 n n C1 H12 PGE sing 374 n n O1 HO1 PGE sing 375 n n C2 O2 PGE sing 376 n n C2 H2 PGE sing 377 n n C2 H22 PGE sing 378 n n O2 C3 PGE sing 379 n n C3 C4 PGE sing 380 n n C3 H3 PGE sing 381 n n C3 H32 PGE sing 382 n n C4 O3 PGE sing 383 n n C4 H4 PGE sing 384 n n C4 H42 PGE sing 385 n n O4 C6 PGE sing 386 n n O4 HO4 PGE sing 387 n n C6 C5 PGE sing 388 n n C6 H6 PGE sing 389 n n C6 H62 PGE sing 390 n n C5 O3 PGE sing 391 n n C5 H5 PGE sing 392 n n C5 H52 PGE sing 393 n n # _atom_sites.entry_id 6LI1 _atom_sites.fract_transf_matrix[1][1] 0.015004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 1201 401 OLC OLC . C 3 FMN A 1 1202 1201 FMN FMN . D 4 PEG A 1 1203 1301 PEG PEG . E 2 OLC A 1 1204 1501 OLC OLC . F 5 PGE A 1 1205 1601 PGE PGE . G 6 HOH A 1 1301 5 HOH HOH . G 6 HOH A 2 1302 1 HOH HOH . G 6 HOH A 3 1303 6 HOH HOH . G 6 HOH A 4 1304 7 HOH HOH . G 6 HOH A 5 1305 4 HOH HOH . G 6 HOH A 6 1306 8 HOH HOH . G 6 HOH A 7 1307 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . F 5 10.052 -14.411 -15.084 0.9 65.81 ? C1 PGE 1205 A 1 HETATM 2 O O1 PGE . . . F 5 10.286 -13.523 -13.963 0.9 62.54 ? O1 PGE 1205 A 1 HETATM 3 C C2 PGE . . . F 5 9.401 -13.726 -16.259 0.9 54.57 ? C2 PGE 1205 A 1 HETATM 4 O O2 PGE . . . F 5 10.394 -13.485 -17.274 0.9 51.46 ? O2 PGE 1205 A 1 HETATM 5 C C3 PGE . . . F 5 10.223 -12.277 -18.016 0.9 46.51 ? C3 PGE 1205 A 1 HETATM 6 C C4 PGE . . . F 5 9.589 -11.212 -17.162 0.9 55.96 ? C4 PGE 1205 A 1 HETATM 7 O O4 PGE . . . F 5 8.406 -9.216 -15.035 0.9 62.33 ? O4 PGE 1205 A 1 HETATM 8 C C6 PGE . . . F 5 9.519 -8.497 -15.622 0.9 63.7 ? C6 PGE 1205 A 1 HETATM 9 C C5 PGE . . . F 5 9.703 -8.822 -17.089 0.9 51.04 ? C5 PGE 1205 A 1 HETATM 10 O O3 PGE . . . F 5 10.417 -10.056 -17.228 0.9 41.6 ? O3 PGE 1205 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #