data_6LIG # _model_server_result.job_id iQKr9nwAb08jsg4SCZimgw _model_server_result.datetime_utc '2024-12-04 23:55:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lig # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6LIG # _exptl.entry_id 6LIG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.508 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]-5-[[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]methylidene]-4-oxidanyl-furan-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.87 _cell.angle_gamma 90 _cell.entry_id 6LIG _cell.length_a 64.87 _cell.length_b 90.42 _cell.length_c 74.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 257 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 259 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C30 _struct_conn.ptnr2_label_comp_id EE6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id EE6 _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.431 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H28 O5' _chem_comp.formula_weight 432.508 _chem_comp.id EE6 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]-5-[[3-(3-methylbut-2-enyl)-4-oxidanyl-phenyl]methylidene]-4-oxidanyl-furan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O26 C23 EE6 sing 83 n n C24 C23 EE6 doub 84 n y C24 C25 EE6 sing 85 n y C23 C22 EE6 sing 86 n y C25 C20 EE6 doub 87 n y C22 C27 EE6 sing 88 n n C22 C21 EE6 doub 89 n y C27 C28 EE6 sing 90 n n C21 C20 EE6 sing 91 n y C20 C19 EE6 sing 92 n n C28 C29 EE6 doub 93 n n C17 C16 EE6 sing 94 n n C31 C29 EE6 sing 95 n n C29 C30 EE6 sing 96 n n C19 C02 EE6 doub 97 e n C16 C18 EE6 sing 98 n n C16 C15 EE6 doub 99 n n C02 C01 EE6 sing 100 n n C02 O04 EE6 sing 101 n n O06 C01 EE6 sing 102 n n C01 C03 EE6 doub 103 n n C15 C14 EE6 sing 104 n n O04 C05 EE6 sing 105 n n C03 C05 EE6 sing 106 n n C03 C07 EE6 sing 107 n n C05 O32 EE6 doub 108 n n C08 C07 EE6 doub 109 n y C08 C09 EE6 sing 110 n y C14 C09 EE6 sing 111 n n C07 C12 EE6 sing 112 n y C09 C10 EE6 doub 113 n y C12 C11 EE6 doub 114 n y C10 C11 EE6 sing 115 n y C10 O13 EE6 sing 116 n n C15 H1 EE6 sing 117 n n C17 H2 EE6 sing 118 n n C17 H3 EE6 sing 119 n n C17 H4 EE6 sing 120 n n C21 H5 EE6 sing 121 n n C24 H6 EE6 sing 122 n n C28 H7 EE6 sing 123 n n C08 H9 EE6 sing 124 n n C11 H10 EE6 sing 125 n n C12 H11 EE6 sing 126 n n C14 H12 EE6 sing 127 n n C14 H13 EE6 sing 128 n n C18 H14 EE6 sing 129 n n C18 H15 EE6 sing 130 n n C18 H16 EE6 sing 131 n n C19 H17 EE6 sing 132 n n C25 H19 EE6 sing 133 n n C27 H20 EE6 sing 134 n n C27 H21 EE6 sing 135 n n C30 H22 EE6 sing 136 n n C30 H23 EE6 sing 137 n n C30 H24 EE6 sing 138 n n C31 H25 EE6 sing 139 n n C31 H26 EE6 sing 140 n n C31 H27 EE6 sing 141 n n O06 H28 EE6 sing 142 n n O13 H29 EE6 sing 143 n n O26 H30 EE6 sing 144 n n # _atom_sites.entry_id 6LIG _atom_sites.fract_transf_matrix[1][1] 0.015415 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000503 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EE6 A 1 501 413 EE6 LIG . D 3 PLP B 1 501 413 PLP PLP . E 4 HOH A 1 601 76 HOH HOH . E 4 HOH A 2 602 84 HOH HOH . E 4 HOH A 3 603 60 HOH HOH . E 4 HOH A 4 604 144 HOH HOH . E 4 HOH A 5 605 111 HOH HOH . E 4 HOH A 6 606 85 HOH HOH . E 4 HOH A 7 607 82 HOH HOH . E 4 HOH A 8 608 77 HOH HOH . E 4 HOH A 9 609 164 HOH HOH . E 4 HOH A 10 610 147 HOH HOH . E 4 HOH A 11 611 66 HOH HOH . E 4 HOH A 12 612 101 HOH HOH . E 4 HOH A 13 613 133 HOH HOH . E 4 HOH A 14 614 41 HOH HOH . E 4 HOH A 15 615 19 HOH HOH . E 4 HOH A 16 616 157 HOH HOH . E 4 HOH A 17 617 28 HOH HOH . E 4 HOH A 18 618 110 HOH HOH . E 4 HOH A 19 619 107 HOH HOH . E 4 HOH A 20 620 7 HOH HOH . E 4 HOH A 21 621 117 HOH HOH . E 4 HOH A 22 622 71 HOH HOH . E 4 HOH A 23 623 152 HOH HOH . E 4 HOH A 24 624 130 HOH HOH . E 4 HOH A 25 625 150 HOH HOH . E 4 HOH A 26 626 3 HOH HOH . E 4 HOH A 27 627 112 HOH HOH . E 4 HOH A 28 628 63 HOH HOH . E 4 HOH A 29 629 97 HOH HOH . E 4 HOH A 30 630 5 HOH HOH . E 4 HOH A 31 631 91 HOH HOH . E 4 HOH A 32 632 29 HOH HOH . E 4 HOH A 33 633 127 HOH HOH . E 4 HOH A 34 634 45 HOH HOH . E 4 HOH A 35 635 149 HOH HOH . E 4 HOH A 36 636 166 HOH HOH . E 4 HOH A 37 637 81 HOH HOH . E 4 HOH A 38 638 39 HOH HOH . E 4 HOH A 39 639 50 HOH HOH . E 4 HOH A 40 640 83 HOH HOH . E 4 HOH A 41 641 65 HOH HOH . E 4 HOH A 42 642 79 HOH HOH . E 4 HOH A 43 643 123 HOH HOH . E 4 HOH A 44 644 16 HOH HOH . E 4 HOH A 45 645 34 HOH HOH . E 4 HOH A 46 646 125 HOH HOH . E 4 HOH A 47 647 13 HOH HOH . E 4 HOH A 48 648 36 HOH HOH . E 4 HOH A 49 649 138 HOH HOH . E 4 HOH A 50 650 31 HOH HOH . E 4 HOH A 51 651 118 HOH HOH . E 4 HOH A 52 652 139 HOH HOH . E 4 HOH A 53 653 134 HOH HOH . E 4 HOH A 54 654 64 HOH HOH . E 4 HOH A 55 655 35 HOH HOH . E 4 HOH A 56 656 10 HOH HOH . E 4 HOH A 57 657 22 HOH HOH . E 4 HOH A 58 658 156 HOH HOH . E 4 HOH A 59 659 23 HOH HOH . E 4 HOH A 60 660 169 HOH HOH . E 4 HOH A 61 661 46 HOH HOH . E 4 HOH A 62 662 80 HOH HOH . E 4 HOH A 63 663 69 HOH HOH . E 4 HOH A 64 664 95 HOH HOH . E 4 HOH A 65 665 170 HOH HOH . E 4 HOH A 66 666 142 HOH HOH . E 4 HOH A 67 667 54 HOH HOH . E 4 HOH A 68 668 161 HOH HOH . E 4 HOH A 69 669 99 HOH HOH . E 4 HOH A 70 670 40 HOH HOH . E 4 HOH A 71 671 88 HOH HOH . E 4 HOH A 72 672 167 HOH HOH . E 4 HOH A 73 673 92 HOH HOH . E 4 HOH A 74 674 171 HOH HOH . E 4 HOH A 75 675 48 HOH HOH . E 4 HOH A 76 676 116 HOH HOH . E 4 HOH A 77 677 172 HOH HOH . E 4 HOH A 78 678 113 HOH HOH . E 4 HOH A 79 679 93 HOH HOH . E 4 HOH A 80 680 124 HOH HOH . E 4 HOH A 81 681 119 HOH HOH . E 4 HOH A 82 682 75 HOH HOH . E 4 HOH A 83 683 106 HOH HOH . E 4 HOH A 84 684 104 HOH HOH . E 4 HOH A 85 685 30 HOH HOH . E 4 HOH A 86 686 140 HOH HOH . E 4 HOH A 87 687 153 HOH HOH . E 4 HOH A 88 688 132 HOH HOH . E 4 HOH A 89 689 131 HOH HOH . F 4 HOH B 1 601 129 HOH HOH . F 4 HOH B 2 602 15 HOH HOH . F 4 HOH B 3 603 165 HOH HOH . F 4 HOH B 4 604 59 HOH HOH . F 4 HOH B 5 605 62 HOH HOH . F 4 HOH B 6 606 151 HOH HOH . F 4 HOH B 7 607 128 HOH HOH . F 4 HOH B 8 608 163 HOH HOH . F 4 HOH B 9 609 26 HOH HOH . F 4 HOH B 10 610 2 HOH HOH . F 4 HOH B 11 611 1 HOH HOH . F 4 HOH B 12 612 73 HOH HOH . F 4 HOH B 13 613 96 HOH HOH . F 4 HOH B 14 614 87 HOH HOH . F 4 HOH B 15 615 44 HOH HOH . F 4 HOH B 16 616 155 HOH HOH . F 4 HOH B 17 617 6 HOH HOH . F 4 HOH B 18 618 145 HOH HOH . F 4 HOH B 19 619 4 HOH HOH . F 4 HOH B 20 620 105 HOH HOH . F 4 HOH B 21 621 43 HOH HOH . F 4 HOH B 22 622 72 HOH HOH . F 4 HOH B 23 623 17 HOH HOH . F 4 HOH B 24 624 58 HOH HOH . F 4 HOH B 25 625 33 HOH HOH . F 4 HOH B 26 626 68 HOH HOH . F 4 HOH B 27 627 21 HOH HOH . F 4 HOH B 28 628 24 HOH HOH . F 4 HOH B 29 629 109 HOH HOH . F 4 HOH B 30 630 52 HOH HOH . F 4 HOH B 31 631 74 HOH HOH . F 4 HOH B 32 632 160 HOH HOH . F 4 HOH B 33 633 162 HOH HOH . F 4 HOH B 34 634 18 HOH HOH . F 4 HOH B 35 635 42 HOH HOH . F 4 HOH B 36 636 122 HOH HOH . F 4 HOH B 37 637 14 HOH HOH . F 4 HOH B 38 638 100 HOH HOH . F 4 HOH B 39 639 102 HOH HOH . F 4 HOH B 40 640 78 HOH HOH . F 4 HOH B 41 641 90 HOH HOH . F 4 HOH B 42 642 12 HOH HOH . F 4 HOH B 43 643 8 HOH HOH . F 4 HOH B 44 644 168 HOH HOH . F 4 HOH B 45 645 94 HOH HOH . F 4 HOH B 46 646 137 HOH HOH . F 4 HOH B 47 647 11 HOH HOH . F 4 HOH B 48 648 37 HOH HOH . F 4 HOH B 49 649 53 HOH HOH . F 4 HOH B 50 650 57 HOH HOH . F 4 HOH B 51 651 51 HOH HOH . F 4 HOH B 52 652 32 HOH HOH . F 4 HOH B 53 653 56 HOH HOH . F 4 HOH B 54 654 115 HOH HOH . F 4 HOH B 55 655 135 HOH HOH . F 4 HOH B 56 656 67 HOH HOH . F 4 HOH B 57 657 61 HOH HOH . F 4 HOH B 58 658 9 HOH HOH . F 4 HOH B 59 659 47 HOH HOH . F 4 HOH B 60 660 27 HOH HOH . F 4 HOH B 61 661 174 HOH HOH . F 4 HOH B 62 662 25 HOH HOH . F 4 HOH B 63 663 126 HOH HOH . F 4 HOH B 64 664 20 HOH HOH . F 4 HOH B 65 665 49 HOH HOH . F 4 HOH B 66 666 108 HOH HOH . F 4 HOH B 67 667 154 HOH HOH . F 4 HOH B 68 668 38 HOH HOH . F 4 HOH B 69 669 173 HOH HOH . F 4 HOH B 70 670 89 HOH HOH . F 4 HOH B 71 671 103 HOH HOH . F 4 HOH B 72 672 159 HOH HOH . F 4 HOH B 73 673 136 HOH HOH . F 4 HOH B 74 674 141 HOH HOH . F 4 HOH B 75 675 55 HOH HOH . F 4 HOH B 76 676 143 HOH HOH . F 4 HOH B 77 677 86 HOH HOH . F 4 HOH B 78 678 158 HOH HOH . F 4 HOH B 79 679 121 HOH HOH . F 4 HOH B 80 680 98 HOH HOH . F 4 HOH B 81 681 120 HOH HOH . F 4 HOH B 82 682 148 HOH HOH . F 4 HOH B 83 683 70 HOH HOH . F 4 HOH B 84 684 146 HOH HOH . F 4 HOH B 85 685 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EE6 . . . C 2 -31.821 5.141 -33.338 1 32.07 ? C10 EE6 501 A 1 HETATM 2 C C15 EE6 . . . C 2 -33.241 6.022 -36.597 1 33.38 ? C15 EE6 501 A 1 HETATM 3 C C17 EE6 . . . C 2 -33.881 6.491 -38.929 1 31.62 ? C17 EE6 501 A 1 HETATM 4 C C20 EE6 . . . C 2 -27.666 3.596 -39.672 1 30.19 ? C20 EE6 501 A 1 HETATM 5 C C21 EE6 . . . C 2 -29.006 3.322 -39.684 1 28.77 ? C21 EE6 501 A 1 HETATM 6 C C22 EE6 . . . C 2 -29.857 3.774 -40.638 1 28.69 ? C22 EE6 501 A 1 HETATM 7 C C24 EE6 . . . C 2 -27.99 4.827 -41.694 1 30.08 ? C24 EE6 501 A 1 HETATM 8 C C28 EE6 . . . C 2 -31.948 2.841 -39.295 1 31.19 ? C28 EE6 501 A 1 HETATM 9 C C01 EE6 . . . C 2 -28.381 3.647 -36.782 1 31.56 ? C01 EE6 501 A 1 HETATM 10 C C02 EE6 . . . C 2 -27.447 2.795 -37.365 1 30.17 ? C02 EE6 501 A 1 HETATM 11 C C03 EE6 . . . C 2 -28.817 3.048 -35.588 1 29.75 ? C03 EE6 501 A 1 HETATM 12 C C05 EE6 . . . C 2 -28.105 1.848 -35.503 1 26.71 ? C05 EE6 501 A 1 HETATM 13 C C07 EE6 . . . C 2 -29.863 3.767 -34.737 1 31.67 ? C07 EE6 501 A 1 HETATM 14 C C08 EE6 . . . C 2 -31.052 4.125 -35.357 1 32.95 ? C08 EE6 501 A 1 HETATM 15 C C09 EE6 . . . C 2 -32.031 4.806 -34.663 1 33.39 ? C09 EE6 501 A 1 HETATM 16 C C11 EE6 . . . C 2 -30.626 4.804 -32.72 1 31.51 ? C11 EE6 501 A 1 HETATM 17 C C12 EE6 . . . C 2 -29.645 4.119 -33.421 1 30.98 ? C12 EE6 501 A 1 HETATM 18 C C14 EE6 . . . C 2 -33.351 5.165 -35.34 1 33.68 ? C14 EE6 501 A 1 HETATM 19 C C16 EE6 . . . C 2 -33.941 5.666 -37.651 1 33.01 ? C16 EE6 501 A 1 HETATM 20 C C18 EE6 . . . C 2 -34.818 4.418 -37.595 1 33.75 ? C18 EE6 501 A 1 HETATM 21 C C19 EE6 . . . C 2 -26.832 3.032 -38.518 1 31.25 ? C19 EE6 501 A 1 HETATM 22 C C23 EE6 . . . C 2 -29.346 4.531 -41.669 1 28.89 ? C23 EE6 501 A 1 HETATM 23 C C25 EE6 . . . C 2 -27.145 4.36 -40.695 1 30.6 ? C25 EE6 501 A 1 HETATM 24 C C27 EE6 . . . C 2 -31.322 3.408 -40.581 1 29.73 ? C27 EE6 501 A 1 HETATM 25 C C29 EE6 . . . C 2 -31.658 1.766 -38.553 1 31.93 ? C29 EE6 501 A 1 HETATM 26 C C30 EE6 . . . C 2 -32.543 1.5 -37.337 1 32.77 ? C30 EE6 501 A 1 HETATM 27 C C31 EE6 . . . C 2 -30.503 0.791 -38.792 1 32.09 ? C31 EE6 501 A 1 HETATM 28 O O04 EE6 . . . C 2 -27.331 1.758 -36.563 1 28.52 ? O04 EE6 501 A 1 HETATM 29 O O06 EE6 . . . C 2 -28.852 4.859 -37.26 1 34.55 ? O06 EE6 501 A 1 HETATM 30 O O13 EE6 . . . C 2 -32.819 5.827 -32.637 1 31.8 ? O13 EE6 501 A 1 HETATM 31 O O26 EE6 . . . C 2 -30.185 5.007 -42.68 1 28.48 ? O26 EE6 501 A 1 HETATM 32 O O32 EE6 . . . C 2 -28.176 1.045 -34.64 1 24.43 ? O32 EE6 501 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #