data_6LIG
#
_model_server_result.job_id            tePd5ixqNBUCpuYs8ti_xA 
_model_server_result.datetime_utc      '2024-12-04 23:52:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lig 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    6LIG 
#
_exptl.entry_id    6LIG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.87 
_cell.angle_gamma         90 
_cell.entry_id            6LIG 
_cell.length_a            64.87 
_cell.length_b            90.42 
_cell.length_c            74.05 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LIG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             257 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              259 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C30 
_struct_conn.ptnr2_label_comp_id            EE6 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             EE6 
_struct_conn.ptnr2_auth_seq_id              501 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.431 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 322 n y 
N1 C6 PLP sing 323 n y 
C2 C2A PLP sing 324 n n 
C2 C3 PLP sing 325 n y 
C2A H2A1 PLP sing 326 n n 
C2A H2A2 PLP sing 327 n n 
C2A H2A3 PLP sing 328 n n 
C3 O3 PLP sing 329 n n 
C3 C4 PLP doub 330 n y 
O3 HO3 PLP sing 331 n n 
C4 C4A PLP sing 332 n n 
C4 C5 PLP sing 333 n y 
C4A O4A PLP doub 334 n n 
C4A H4A PLP sing 335 n n 
C5 C6 PLP doub 336 n y 
C5 C5A PLP sing 337 n n 
C6 H6 PLP sing 338 n n 
C5A O4P PLP sing 339 n n 
C5A H5A1 PLP sing 340 n n 
C5A H5A2 PLP sing 341 n n 
O4P P PLP sing 342 n n 
P O1P PLP doub 343 n n 
P O2P PLP sing 344 n n 
P O3P PLP sing 345 n n 
O2P HOP2 PLP sing 346 n n 
O3P HOP3 PLP sing 347 n n 
#
_atom_sites.entry_id                     6LIG 
_atom_sites.fract_transf_matrix[1][1]    0.015415 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000503 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01106 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EE6 A 1 501 413 EE6 LIG . 
D 3 PLP B 1 501 413 PLP PLP . 
E 4 HOH A 1 601 76 HOH HOH . 
E 4 HOH A 2 602 84 HOH HOH . 
E 4 HOH A 3 603 60 HOH HOH . 
E 4 HOH A 4 604 144 HOH HOH . 
E 4 HOH A 5 605 111 HOH HOH . 
E 4 HOH A 6 606 85 HOH HOH . 
E 4 HOH A 7 607 82 HOH HOH . 
E 4 HOH A 8 608 77 HOH HOH . 
E 4 HOH A 9 609 164 HOH HOH . 
E 4 HOH A 10 610 147 HOH HOH . 
E 4 HOH A 11 611 66 HOH HOH . 
E 4 HOH A 12 612 101 HOH HOH . 
E 4 HOH A 13 613 133 HOH HOH . 
E 4 HOH A 14 614 41 HOH HOH . 
E 4 HOH A 15 615 19 HOH HOH . 
E 4 HOH A 16 616 157 HOH HOH . 
E 4 HOH A 17 617 28 HOH HOH . 
E 4 HOH A 18 618 110 HOH HOH . 
E 4 HOH A 19 619 107 HOH HOH . 
E 4 HOH A 20 620 7 HOH HOH . 
E 4 HOH A 21 621 117 HOH HOH . 
E 4 HOH A 22 622 71 HOH HOH . 
E 4 HOH A 23 623 152 HOH HOH . 
E 4 HOH A 24 624 130 HOH HOH . 
E 4 HOH A 25 625 150 HOH HOH . 
E 4 HOH A 26 626 3 HOH HOH . 
E 4 HOH A 27 627 112 HOH HOH . 
E 4 HOH A 28 628 63 HOH HOH . 
E 4 HOH A 29 629 97 HOH HOH . 
E 4 HOH A 30 630 5 HOH HOH . 
E 4 HOH A 31 631 91 HOH HOH . 
E 4 HOH A 32 632 29 HOH HOH . 
E 4 HOH A 33 633 127 HOH HOH . 
E 4 HOH A 34 634 45 HOH HOH . 
E 4 HOH A 35 635 149 HOH HOH . 
E 4 HOH A 36 636 166 HOH HOH . 
E 4 HOH A 37 637 81 HOH HOH . 
E 4 HOH A 38 638 39 HOH HOH . 
E 4 HOH A 39 639 50 HOH HOH . 
E 4 HOH A 40 640 83 HOH HOH . 
E 4 HOH A 41 641 65 HOH HOH . 
E 4 HOH A 42 642 79 HOH HOH . 
E 4 HOH A 43 643 123 HOH HOH . 
E 4 HOH A 44 644 16 HOH HOH . 
E 4 HOH A 45 645 34 HOH HOH . 
E 4 HOH A 46 646 125 HOH HOH . 
E 4 HOH A 47 647 13 HOH HOH . 
E 4 HOH A 48 648 36 HOH HOH . 
E 4 HOH A 49 649 138 HOH HOH . 
E 4 HOH A 50 650 31 HOH HOH . 
E 4 HOH A 51 651 118 HOH HOH . 
E 4 HOH A 52 652 139 HOH HOH . 
E 4 HOH A 53 653 134 HOH HOH . 
E 4 HOH A 54 654 64 HOH HOH . 
E 4 HOH A 55 655 35 HOH HOH . 
E 4 HOH A 56 656 10 HOH HOH . 
E 4 HOH A 57 657 22 HOH HOH . 
E 4 HOH A 58 658 156 HOH HOH . 
E 4 HOH A 59 659 23 HOH HOH . 
E 4 HOH A 60 660 169 HOH HOH . 
E 4 HOH A 61 661 46 HOH HOH . 
E 4 HOH A 62 662 80 HOH HOH . 
E 4 HOH A 63 663 69 HOH HOH . 
E 4 HOH A 64 664 95 HOH HOH . 
E 4 HOH A 65 665 170 HOH HOH . 
E 4 HOH A 66 666 142 HOH HOH . 
E 4 HOH A 67 667 54 HOH HOH . 
E 4 HOH A 68 668 161 HOH HOH . 
E 4 HOH A 69 669 99 HOH HOH . 
E 4 HOH A 70 670 40 HOH HOH . 
E 4 HOH A 71 671 88 HOH HOH . 
E 4 HOH A 72 672 167 HOH HOH . 
E 4 HOH A 73 673 92 HOH HOH . 
E 4 HOH A 74 674 171 HOH HOH . 
E 4 HOH A 75 675 48 HOH HOH . 
E 4 HOH A 76 676 116 HOH HOH . 
E 4 HOH A 77 677 172 HOH HOH . 
E 4 HOH A 78 678 113 HOH HOH . 
E 4 HOH A 79 679 93 HOH HOH . 
E 4 HOH A 80 680 124 HOH HOH . 
E 4 HOH A 81 681 119 HOH HOH . 
E 4 HOH A 82 682 75 HOH HOH . 
E 4 HOH A 83 683 106 HOH HOH . 
E 4 HOH A 84 684 104 HOH HOH . 
E 4 HOH A 85 685 30 HOH HOH . 
E 4 HOH A 86 686 140 HOH HOH . 
E 4 HOH A 87 687 153 HOH HOH . 
E 4 HOH A 88 688 132 HOH HOH . 
E 4 HOH A 89 689 131 HOH HOH . 
F 4 HOH B 1 601 129 HOH HOH . 
F 4 HOH B 2 602 15 HOH HOH . 
F 4 HOH B 3 603 165 HOH HOH . 
F 4 HOH B 4 604 59 HOH HOH . 
F 4 HOH B 5 605 62 HOH HOH . 
F 4 HOH B 6 606 151 HOH HOH . 
F 4 HOH B 7 607 128 HOH HOH . 
F 4 HOH B 8 608 163 HOH HOH . 
F 4 HOH B 9 609 26 HOH HOH . 
F 4 HOH B 10 610 2 HOH HOH . 
F 4 HOH B 11 611 1 HOH HOH . 
F 4 HOH B 12 612 73 HOH HOH . 
F 4 HOH B 13 613 96 HOH HOH . 
F 4 HOH B 14 614 87 HOH HOH . 
F 4 HOH B 15 615 44 HOH HOH . 
F 4 HOH B 16 616 155 HOH HOH . 
F 4 HOH B 17 617 6 HOH HOH . 
F 4 HOH B 18 618 145 HOH HOH . 
F 4 HOH B 19 619 4 HOH HOH . 
F 4 HOH B 20 620 105 HOH HOH . 
F 4 HOH B 21 621 43 HOH HOH . 
F 4 HOH B 22 622 72 HOH HOH . 
F 4 HOH B 23 623 17 HOH HOH . 
F 4 HOH B 24 624 58 HOH HOH . 
F 4 HOH B 25 625 33 HOH HOH . 
F 4 HOH B 26 626 68 HOH HOH . 
F 4 HOH B 27 627 21 HOH HOH . 
F 4 HOH B 28 628 24 HOH HOH . 
F 4 HOH B 29 629 109 HOH HOH . 
F 4 HOH B 30 630 52 HOH HOH . 
F 4 HOH B 31 631 74 HOH HOH . 
F 4 HOH B 32 632 160 HOH HOH . 
F 4 HOH B 33 633 162 HOH HOH . 
F 4 HOH B 34 634 18 HOH HOH . 
F 4 HOH B 35 635 42 HOH HOH . 
F 4 HOH B 36 636 122 HOH HOH . 
F 4 HOH B 37 637 14 HOH HOH . 
F 4 HOH B 38 638 100 HOH HOH . 
F 4 HOH B 39 639 102 HOH HOH . 
F 4 HOH B 40 640 78 HOH HOH . 
F 4 HOH B 41 641 90 HOH HOH . 
F 4 HOH B 42 642 12 HOH HOH . 
F 4 HOH B 43 643 8 HOH HOH . 
F 4 HOH B 44 644 168 HOH HOH . 
F 4 HOH B 45 645 94 HOH HOH . 
F 4 HOH B 46 646 137 HOH HOH . 
F 4 HOH B 47 647 11 HOH HOH . 
F 4 HOH B 48 648 37 HOH HOH . 
F 4 HOH B 49 649 53 HOH HOH . 
F 4 HOH B 50 650 57 HOH HOH . 
F 4 HOH B 51 651 51 HOH HOH . 
F 4 HOH B 52 652 32 HOH HOH . 
F 4 HOH B 53 653 56 HOH HOH . 
F 4 HOH B 54 654 115 HOH HOH . 
F 4 HOH B 55 655 135 HOH HOH . 
F 4 HOH B 56 656 67 HOH HOH . 
F 4 HOH B 57 657 61 HOH HOH . 
F 4 HOH B 58 658 9 HOH HOH . 
F 4 HOH B 59 659 47 HOH HOH . 
F 4 HOH B 60 660 27 HOH HOH . 
F 4 HOH B 61 661 174 HOH HOH . 
F 4 HOH B 62 662 25 HOH HOH . 
F 4 HOH B 63 663 126 HOH HOH . 
F 4 HOH B 64 664 20 HOH HOH . 
F 4 HOH B 65 665 49 HOH HOH . 
F 4 HOH B 66 666 108 HOH HOH . 
F 4 HOH B 67 667 154 HOH HOH . 
F 4 HOH B 68 668 38 HOH HOH . 
F 4 HOH B 69 669 173 HOH HOH . 
F 4 HOH B 70 670 89 HOH HOH . 
F 4 HOH B 71 671 103 HOH HOH . 
F 4 HOH B 72 672 159 HOH HOH . 
F 4 HOH B 73 673 136 HOH HOH . 
F 4 HOH B 74 674 141 HOH HOH . 
F 4 HOH B 75 675 55 HOH HOH . 
F 4 HOH B 76 676 143 HOH HOH . 
F 4 HOH B 77 677 86 HOH HOH . 
F 4 HOH B 78 678 158 HOH HOH . 
F 4 HOH B 79 679 121 HOH HOH . 
F 4 HOH B 80 680 98 HOH HOH . 
F 4 HOH B 81 681 120 HOH HOH . 
F 4 HOH B 82 682 148 HOH HOH . 
F 4 HOH B 83 683 70 HOH HOH . 
F 4 HOH B 84 684 146 HOH HOH . 
F 4 HOH B 85 685 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . D 3 -9.387 3.978 -16.265 1 36.1 ? N1 PLP 501 B 1 
HETATM 2 C C2 PLP . . . D 3 -8.518 3.147 -15.59 1 35.62 ? C2 PLP 501 B 1 
HETATM 3 C C2A PLP . . . D 3 -7.601 3.709 -14.546 1 33.61 ? C2A PLP 501 B 1 
HETATM 4 C C3 PLP . . . D 3 -8.492 1.79 -15.879 1 38.05 ? C3 PLP 501 B 1 
HETATM 5 O O3 PLP . . . D 3 -7.629 0.965 -15.205 1 39.43 ? O3 PLP 501 B 1 
HETATM 6 C C4 PLP . . . D 3 -9.335 1.25 -16.843 1 38.08 ? C4 PLP 501 B 1 
HETATM 7 C C4A PLP . . . D 3 -9.555 -0.234 -16.762 1 38.4 ? C4A PLP 501 B 1 
HETATM 8 O O4A PLP . . . D 3 -10.422 -0.69 -16.019 1 38.45 ? O4A PLP 501 B 1 
HETATM 9 C C5 PLP . . . D 3 -10.22 2.097 -17.517 1 36.07 ? C5 PLP 501 B 1 
HETATM 10 C C6 PLP . . . D 3 -10.229 3.458 -17.225 1 36.08 ? C6 PLP 501 B 1 
HETATM 11 C C5A PLP . . . D 3 -11.167 1.606 -18.595 1 33.95 ? C5A PLP 501 B 1 
HETATM 12 O O4P PLP . . . D 3 -12.044 0.588 -18.171 1 30.72 ? O4P PLP 501 B 1 
HETATM 13 P P PLP . . . D 3 -13.054 -0.06 -19.247 1 26.94 ? P PLP 501 B 1 
HETATM 14 O O1P PLP . . . D 3 -13.492 1.006 -20.222 1 27.12 ? O1P PLP 501 B 1 
HETATM 15 O O2P PLP . . . D 3 -12.33 -1.151 -19.999 1 26.86 ? O2P PLP 501 B 1 
HETATM 16 O O3P PLP . . . D 3 -14.259 -0.631 -18.54 1 26.72 ? O3P PLP 501 B 1 
#
_model_server_stats.io_time_ms              132 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#