data_6LK1
#
_model_server_result.job_id            z9RgTevpGFYNeH3yxx8nWw 
_model_server_result.datetime_utc      '2024-11-14 10:42:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lk1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":106}' 
#
_entry.id    6LK1 
#
_exptl.entry_id    6LK1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.4 
_cell.angle_gamma         90 
_cell.entry_id            6LK1 
_cell.length_a            25.955 
_cell.length_b            60.09 
_cell.length_c            50.085 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LK1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,Q 1 1 
B,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 38 A CYS 38 1_555 C FE1 FES . A FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc2 A SG CYS 43 A CYS 43 1_555 C FE1 FES . A FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc3 A SG CYS 46 A CYS 46 1_555 C FE2 FES . A FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc4 A SG CYS 76 A CYS 76 1_555 C FE2 FES . A FES 101 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc5 B SG CYS 38 B CYS 38 1_555 L FE1 FES . B FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc6 B SG CYS 43 B CYS 43 1_555 L FE1 FES . B FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc7 B SG CYS 46 B CYS 46 1_555 L FE2 FES . B FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc8 B SG CYS 76 B CYS 76 1_555 L FE2 FES . B FES 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     6LK1 
_atom_sites.fract_transf_matrix[1][1]    0.038528 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008471 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016642 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020443 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FES A 1 101 101 FES FES . 
D 3 BEN A 1 102 502 BEN BEN . 
E 3 BEN A 1 103 503 BEN BEN . 
F 3 BEN A 1 104 504 BEN BEN . 
G 3 BEN A 1 105 505 BEN BEN . 
H 3 BEN A 1 106 506 BEN BEN . 
I 3 BEN A 1 107 507 BEN BEN . 
J 4 SCN A 1 108 601 SCN SCN . 
K 5 SO4 A 1 109 701 SO4 SO4 . 
L 2 FES B 1 101 101 FES FES . 
M 3 BEN B 1 102 501 BEN BEN . 
N 3 BEN B 1 103 508 BEN BEN . 
O 3 BEN B 1 104 509 BEN BEN . 
P 3 BEN B 1 105 510 BEN BEN . 
Q 6 HOH A 1 201 206 HOH HOH . 
Q 6 HOH A 2 202 209 HOH HOH . 
Q 6 HOH A 3 203 200 HOH HOH . 
Q 6 HOH A 4 204 141 HOH HOH . 
Q 6 HOH A 5 205 202 HOH HOH . 
Q 6 HOH A 6 206 155 HOH HOH . 
Q 6 HOH A 7 207 14 HOH HOH . 
Q 6 HOH A 8 208 178 HOH HOH . 
Q 6 HOH A 9 209 13 HOH HOH . 
Q 6 HOH A 10 210 102 HOH HOH . 
Q 6 HOH A 11 211 103 HOH HOH . 
Q 6 HOH A 12 212 22 HOH HOH . 
Q 6 HOH A 13 213 218 HOH HOH . 
Q 6 HOH A 14 214 27 HOH HOH . 
Q 6 HOH A 15 215 127 HOH HOH . 
Q 6 HOH A 16 216 3 HOH HOH . 
Q 6 HOH A 17 217 120 HOH HOH . 
Q 6 HOH A 18 218 125 HOH HOH . 
Q 6 HOH A 19 219 116 HOH HOH . 
Q 6 HOH A 20 220 1 HOH HOH . 
Q 6 HOH A 21 221 18 HOH HOH . 
Q 6 HOH A 22 222 114 HOH HOH . 
Q 6 HOH A 23 223 176 HOH HOH . 
Q 6 HOH A 24 224 17 HOH HOH . 
Q 6 HOH A 25 225 182 HOH HOH . 
Q 6 HOH A 26 226 181 HOH HOH . 
Q 6 HOH A 27 227 10 HOH HOH . 
Q 6 HOH A 28 228 111 HOH HOH . 
Q 6 HOH A 29 229 5 HOH HOH . 
Q 6 HOH A 30 230 8 HOH HOH . 
Q 6 HOH A 31 231 162 HOH HOH . 
Q 6 HOH A 32 232 143 HOH HOH . 
Q 6 HOH A 33 233 136 HOH HOH . 
Q 6 HOH A 34 234 135 HOH HOH . 
Q 6 HOH A 35 235 199 HOH HOH . 
Q 6 HOH A 36 236 110 HOH HOH . 
Q 6 HOH A 37 237 106 HOH HOH . 
Q 6 HOH A 38 238 107 HOH HOH . 
Q 6 HOH A 39 239 147 HOH HOH . 
Q 6 HOH A 40 240 601 HOH HOH . 
Q 6 HOH A 41 241 168 HOH HOH . 
Q 6 HOH A 42 242 139 HOH HOH . 
Q 6 HOH A 43 243 195 HOH HOH . 
Q 6 HOH A 44 244 108 HOH HOH . 
Q 6 HOH A 45 245 157 HOH HOH . 
Q 6 HOH A 46 246 7 HOH HOH . 
Q 6 HOH A 47 247 124 HOH HOH . 
Q 6 HOH A 48 248 16 HOH HOH . 
Q 6 HOH A 49 249 100 HOH HOH . 
Q 6 HOH A 50 250 192 HOH HOH . 
Q 6 HOH A 51 251 169 HOH HOH . 
Q 6 HOH A 52 252 194 HOH HOH . 
Q 6 HOH A 53 253 616 HOH HOH . 
Q 6 HOH A 54 254 216 HOH HOH . 
Q 6 HOH A 55 255 145 HOH HOH . 
Q 6 HOH A 56 256 219 HOH HOH . 
Q 6 HOH A 57 257 126 HOH HOH . 
Q 6 HOH A 58 258 212 HOH HOH . 
Q 6 HOH A 59 259 137 HOH HOH . 
Q 6 HOH A 60 260 6 HOH HOH . 
Q 6 HOH A 61 261 605 HOH HOH . 
Q 6 HOH A 62 262 197 HOH HOH . 
Q 6 HOH A 63 263 144 HOH HOH . 
Q 6 HOH A 64 264 613 HOH HOH . 
Q 6 HOH A 65 265 201 HOH HOH . 
Q 6 HOH A 66 266 138 HOH HOH . 
Q 6 HOH A 67 267 113 HOH HOH . 
Q 6 HOH A 68 268 204 HOH HOH . 
Q 6 HOH A 69 269 170 HOH HOH . 
Q 6 HOH A 70 270 130 HOH HOH . 
Q 6 HOH A 71 271 602 HOH HOH . 
Q 6 HOH A 72 272 604 HOH HOH . 
Q 6 HOH A 73 273 171 HOH HOH . 
Q 6 HOH A 74 274 203 HOH HOH . 
Q 6 HOH A 75 275 205 HOH HOH . 
Q 6 HOH A 76 276 142 HOH HOH . 
Q 6 HOH A 77 277 179 HOH HOH . 
Q 6 HOH A 78 278 163 HOH HOH . 
Q 6 HOH A 79 279 156 HOH HOH . 
Q 6 HOH A 80 280 152 HOH HOH . 
Q 6 HOH A 81 281 187 HOH HOH . 
Q 6 HOH A 82 282 612 HOH HOH . 
R 6 HOH B 1 201 140 HOH HOH . 
R 6 HOH B 2 202 207 HOH HOH . 
R 6 HOH B 3 203 159 HOH HOH . 
R 6 HOH B 4 204 165 HOH HOH . 
R 6 HOH B 5 205 160 HOH HOH . 
R 6 HOH B 6 206 24 HOH HOH . 
R 6 HOH B 7 207 164 HOH HOH . 
R 6 HOH B 8 208 112 HOH HOH . 
R 6 HOH B 9 209 105 HOH HOH . 
R 6 HOH B 10 210 104 HOH HOH . 
R 6 HOH B 11 211 173 HOH HOH . 
R 6 HOH B 12 212 12 HOH HOH . 
R 6 HOH B 13 213 15 HOH HOH . 
R 6 HOH B 14 214 26 HOH HOH . 
R 6 HOH B 15 215 21 HOH HOH . 
R 6 HOH B 16 216 122 HOH HOH . 
R 6 HOH B 17 217 121 HOH HOH . 
R 6 HOH B 18 218 133 HOH HOH . 
R 6 HOH B 19 219 167 HOH HOH . 
R 6 HOH B 20 220 123 HOH HOH . 
R 6 HOH B 21 221 2 HOH HOH . 
R 6 HOH B 22 222 149 HOH HOH . 
R 6 HOH B 23 223 189 HOH HOH . 
R 6 HOH B 24 224 132 HOH HOH . 
R 6 HOH B 25 225 9 HOH HOH . 
R 6 HOH B 26 226 4 HOH HOH . 
R 6 HOH B 27 227 146 HOH HOH . 
R 6 HOH B 28 228 174 HOH HOH . 
R 6 HOH B 29 229 134 HOH HOH . 
R 6 HOH B 30 230 154 HOH HOH . 
R 6 HOH B 31 231 118 HOH HOH . 
R 6 HOH B 32 232 119 HOH HOH . 
R 6 HOH B 33 233 213 HOH HOH . 
R 6 HOH B 34 234 20 HOH HOH . 
R 6 HOH B 35 235 158 HOH HOH . 
R 6 HOH B 36 236 109 HOH HOH . 
R 6 HOH B 37 237 115 HOH HOH . 
R 6 HOH B 38 238 193 HOH HOH . 
R 6 HOH B 39 239 191 HOH HOH . 
R 6 HOH B 40 240 128 HOH HOH . 
R 6 HOH B 41 241 25 HOH HOH . 
R 6 HOH B 42 242 198 HOH HOH . 
R 6 HOH B 43 243 153 HOH HOH . 
R 6 HOH B 44 244 175 HOH HOH . 
R 6 HOH B 45 245 131 HOH HOH . 
R 6 HOH B 46 246 19 HOH HOH . 
R 6 HOH B 47 247 117 HOH HOH . 
R 6 HOH B 48 248 190 HOH HOH . 
R 6 HOH B 49 249 161 HOH HOH . 
R 6 HOH B 50 250 129 HOH HOH . 
R 6 HOH B 51 251 184 HOH HOH . 
R 6 HOH B 52 252 151 HOH HOH . 
R 6 HOH B 53 253 185 HOH HOH . 
R 6 HOH B 54 254 186 HOH HOH . 
R 6 HOH B 55 255 607 HOH HOH . 
R 6 HOH B 56 256 101 HOH HOH . 
R 6 HOH B 57 257 615 HOH HOH . 
R 6 HOH B 58 258 603 HOH HOH . 
R 6 HOH B 59 259 210 HOH HOH . 
R 6 HOH B 60 260 196 HOH HOH . 
R 6 HOH B 61 261 166 HOH HOH . 
R 6 HOH B 62 262 217 HOH HOH . 
R 6 HOH B 63 263 150 HOH HOH . 
R 6 HOH B 64 264 177 HOH HOH . 
R 6 HOH B 65 265 606 HOH HOH . 
R 6 HOH B 66 266 608 HOH HOH . 
R 6 HOH B 67 267 183 HOH HOH . 
R 6 HOH B 68 268 610 HOH HOH . 
R 6 HOH B 69 269 214 HOH HOH . 
R 6 HOH B 70 270 188 HOH HOH . 
R 6 HOH B 71 271 611 HOH HOH . 
R 6 HOH B 72 272 614 HOH HOH . 
R 6 HOH B 73 273 609 HOH HOH . 
R 6 HOH B 74 274 172 HOH HOH . 
R 6 HOH B 75 275 215 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . H 3 9.956 1.661 6.135 1 9.45 ? C1 BEN 106 A 1 
HETATM 2 C C2 BEN . . . H 3 11.013 1.53 7.047 1 13.29 ? C2 BEN 106 A 1 
HETATM 3 C C3 BEN . . . H 3 11.859 2.579 7.211 1 14.6 ? C3 BEN 106 A 1 
HETATM 4 C C4 BEN . . . H 3 11.774 3.755 6.469 1 14.66 ? C4 BEN 106 A 1 
HETATM 5 C C5 BEN . . . H 3 10.677 3.917 5.609 1 11.46 ? C5 BEN 106 A 1 
HETATM 6 C C6 BEN . . . H 3 9.804 2.876 5.463 1 10.05 ? C6 BEN 106 A 1 
HETATM 7 C C BEN . . . H 3 9.054 0.516 5.96 1 10.42 ? C BEN 106 A 1 
HETATM 8 N N1 BEN . . . H 3 7.753 0.705 5.733 1 9.93 ? N1 BEN 106 A 1 
HETATM 9 N N2 BEN . . . H 3 9.528 -0.716 5.949 1 14.46 ? N2 BEN 106 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#