data_6LK4 # _model_server_result.job_id WF77BhdK7p7N_OhDBMUwJQ _model_server_result.datetime_utc '2025-04-02 06:59:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6LK4 # _exptl.entry_id 6LK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LK4 _cell.length_a 144.107 _cell.length_b 144.107 _cell.length_c 135.698 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 6LK4 _atom_sites.fract_transf_matrix[1][1] 0.006939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP A 1 601 601 GTP GTP . C 3 PO4 A 1 602 602 PO4 PO4 . D 4 HOH A 1 701 701 HOH HOH . D 4 HOH A 2 702 702 HOH HOH . D 4 HOH A 3 703 703 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3B GTP . . . B 2 30.09 37.174 -5.778 1 84.08 ? O3B GTP 601 A 1 HETATM 2 P PB GTP . . . B 2 31.092 37.747 -6.897 1 84.03 ? PB GTP 601 A 1 HETATM 3 O O1B GTP . . . B 2 30.712 37.217 -8.267 1 83.21 ? O1B GTP 601 A 1 HETATM 4 O O2B GTP . . . B 2 32.526 37.384 -6.558 1 89.72 ? O2B GTP 601 A 1 HETATM 5 O O3A GTP . . . B 2 30.852 39.337 -6.791 1 78.4 ? O3A GTP 601 A 1 HETATM 6 P PA GTP . . . B 2 31.848 40.379 -6.066 1 79.56 ? PA GTP 601 A 1 HETATM 7 O O1A GTP . . . B 2 33.197 39.801 -5.711 1 82.02 ? O1A GTP 601 A 1 HETATM 8 O O2A GTP . . . B 2 31.136 40.951 -4.878 1 72.96 ? O2A GTP 601 A 1 HETATM 9 O O5' GTP . . . B 2 32.086 41.511 -7.183 1 79.74 ? O5' GTP 601 A 1 HETATM 10 C C5' GTP . . . B 2 31.023 42.298 -7.654 1 69.03 ? C5' GTP 601 A 1 HETATM 11 C C4' GTP . . . B 2 30.327 41.667 -8.858 1 67.9 ? C4' GTP 601 A 1 HETATM 12 O O4' GTP . . . B 2 29.066 42.301 -8.957 1 68.77 ? O4' GTP 601 A 1 HETATM 13 C C3' GTP . . . B 2 31.022 41.884 -10.192 1 67.59 ? C3' GTP 601 A 1 HETATM 14 O O3' GTP . . . B 2 30.784 40.756 -11.011 1 66.88 ? O3' GTP 601 A 1 HETATM 15 C C2' GTP . . . B 2 30.303 43.078 -10.778 1 63.8 ? C2' GTP 601 A 1 HETATM 16 O O2' GTP . . . B 2 30.256 43.114 -12.186 1 63.1 ? O2' GTP 601 A 1 HETATM 17 C C1' GTP . . . B 2 28.912 42.946 -10.195 1 65.47 ? C1' GTP 601 A 1 HETATM 18 N N9 GTP . . . B 2 28.412 44.304 -10.008 1 61.09 ? N9 GTP 601 A 1 HETATM 19 C C8 GTP . . . B 2 27.285 44.82 -10.574 1 62 ? C8 GTP 601 A 1 HETATM 20 N N7 GTP . . . B 2 27.178 46.107 -10.189 1 61.9 ? N7 GTP 601 A 1 HETATM 21 C C5 GTP . . . B 2 28.23 46.408 -9.391 1 64.77 ? C5 GTP 601 A 1 HETATM 22 C C6 GTP . . . B 2 28.592 47.575 -8.737 1 64.41 ? C6 GTP 601 A 1 HETATM 23 O O6 GTP . . . B 2 27.863 48.572 -8.858 1 63.58 ? O6 GTP 601 A 1 HETATM 24 N N1 GTP . . . B 2 29.741 47.605 -7.964 1 61.91 ? N1 GTP 601 A 1 HETATM 25 C C2 GTP . . . B 2 30.512 46.467 -7.848 1 63.61 ? C2 GTP 601 A 1 HETATM 26 N N2 GTP . . . B 2 31.622 46.472 -7.109 1 61.73 ? N2 GTP 601 A 1 HETATM 27 N N3 GTP . . . B 2 30.135 45.308 -8.5 1 63.05 ? N3 GTP 601 A 1 HETATM 28 C C4 GTP . . . B 2 29.015 45.28 -9.263 1 61.84 ? C4 GTP 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #