data_6LKA # _model_server_result.job_id VXVlvrnBR5stJ8sPX9C8GQ _model_server_result.datetime_utc '2025-02-28 12:58:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6LKA # _exptl.entry_id 6LKA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 635.707 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(2~{S})-1-[[(2~{S},3~{S},6~{S},7~{Z},12~{E})-4,9-bis(oxidanylidene)-6-[[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]methyl]-2-phenyl-1,10-dioxa-5-azacyclopentadeca-7,12-dien-3-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]-5-methyl-1,2-oxazole-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LKA _cell.length_a 64.27 _cell.length_b 64.641 _cell.length_c 75.855 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 148 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C16 _struct_conn.ptnr2_label_comp_id EGF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id EGF _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.767 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C33 H41 N5 O8' _chem_comp.formula_weight 635.707 _chem_comp.id EGF _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(2~{S})-1-[[(2~{S},3~{S},6~{S},7~{Z},12~{E})-4,9-bis(oxidanylidene)-6-[[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]methyl]-2-phenyl-1,10-dioxa-5-azacyclopentadeca-7,12-dien-3-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]-5-methyl-1,2-oxazole-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C18 EGF sing 83 n n O6 C19 EGF sing 84 n n C18 O5 EGF doub 85 n n C18 C17 EGF sing 86 n n C19 C20 EGF sing 87 n n C17 C16 EGF doub 88 z n C16 C10 EGF sing 89 n n C20 C21 EGF doub 90 e n C11 C10 EGF sing 91 n n C11 C12 EGF sing 92 n n C10 N3 EGF sing 93 n n C21 C22 EGF sing 94 n n O4 C15 EGF doub 95 n n C13 C12 EGF sing 96 n n C13 C14 EGF sing 97 n n C15 C12 EGF sing 98 n n C15 N4 EGF sing 99 n n N3 C9 EGF sing 100 n n N4 C14 EGF sing 101 n n C22 C23 EGF sing 102 n n O3 C9 EGF doub 103 n n C23 O7 EGF sing 104 n n O7 C24 EGF sing 105 n n C9 C8 EGF sing 106 n n C8 C24 EGF sing 107 n n C8 N2 EGF sing 108 n n C24 C25 EGF sing 109 n n C30 C25 EGF doub 110 n y C30 C29 EGF sing 111 n y C25 C26 EGF sing 112 n y O2 C7 EGF doub 113 n n C29 C28 EGF doub 114 n y N2 C7 EGF sing 115 n n C33 C31 EGF sing 116 n n C7 C6 EGF sing 117 n n C26 C27 EGF doub 118 n y C28 C27 EGF sing 119 n y C31 C6 EGF sing 120 n n C31 C32 EGF sing 121 n n C6 N1 EGF sing 122 n n N1 C5 EGF sing 123 n n C5 O1 EGF doub 124 n n C5 C4 EGF sing 125 n n N5 C4 EGF doub 126 n y N5 O8 EGF sing 127 n y C4 C3 EGF sing 128 n y O8 C2 EGF sing 129 n y C3 C2 EGF doub 130 n y C2 C1 EGF sing 131 n n C1 H1 EGF sing 132 n n C1 H2 EGF sing 133 n n C1 H3 EGF sing 134 n n C10 H4 EGF sing 135 n n C11 H5 EGF sing 136 n n C11 H6 EGF sing 137 n n C12 H7 EGF sing 138 n n C13 H8 EGF sing 139 n n C13 H9 EGF sing 140 n n C14 H10 EGF sing 141 n n C14 H11 EGF sing 142 n n C16 H12 EGF sing 143 n n C17 H14 EGF sing 144 n n C19 H16 EGF sing 145 n n C19 H17 EGF sing 146 n n C20 H18 EGF sing 147 n n C21 H19 EGF sing 148 n n C22 H20 EGF sing 149 n n C22 H21 EGF sing 150 n n C23 H22 EGF sing 151 n n C23 H23 EGF sing 152 n n C24 H24 EGF sing 153 n n C26 H25 EGF sing 154 n n C27 H26 EGF sing 155 n n C28 H27 EGF sing 156 n n C29 H28 EGF sing 157 n n C3 H29 EGF sing 158 n n C30 H30 EGF sing 159 n n C31 H31 EGF sing 160 n n C32 H32 EGF sing 161 n n C32 H33 EGF sing 162 n n C32 H34 EGF sing 163 n n C33 H35 EGF sing 164 n n C33 H36 EGF sing 165 n n C33 H37 EGF sing 166 n n C6 H38 EGF sing 167 n n C8 H39 EGF sing 168 n n N1 H40 EGF sing 169 n n N2 H41 EGF sing 170 n n N3 H42 EGF sing 171 n n N4 H43 EGF sing 172 n n # _atom_sites.entry_id 6LKA _atom_sites.fract_transf_matrix[1][1] 0.015559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EGF A 1 201 201 EGF 265 . C 3 HOH A 1 301 63 HOH HOH . C 3 HOH A 2 302 32 HOH HOH . C 3 HOH A 3 303 117 HOH HOH . C 3 HOH A 4 304 36 HOH HOH . C 3 HOH A 5 305 22 HOH HOH . C 3 HOH A 6 306 42 HOH HOH . C 3 HOH A 7 307 31 HOH HOH . C 3 HOH A 8 308 96 HOH HOH . C 3 HOH A 9 309 29 HOH HOH . C 3 HOH A 10 310 34 HOH HOH . C 3 HOH A 11 311 24 HOH HOH . C 3 HOH A 12 312 112 HOH HOH . C 3 HOH A 13 313 7 HOH HOH . C 3 HOH A 14 314 8 HOH HOH . C 3 HOH A 15 315 27 HOH HOH . C 3 HOH A 16 316 26 HOH HOH . C 3 HOH A 17 317 52 HOH HOH . C 3 HOH A 18 318 35 HOH HOH . C 3 HOH A 19 319 15 HOH HOH . C 3 HOH A 20 320 69 HOH HOH . C 3 HOH A 21 321 11 HOH HOH . C 3 HOH A 22 322 75 HOH HOH . C 3 HOH A 23 323 6 HOH HOH . C 3 HOH A 24 324 62 HOH HOH . C 3 HOH A 25 325 54 HOH HOH . C 3 HOH A 26 326 94 HOH HOH . C 3 HOH A 27 327 3 HOH HOH . C 3 HOH A 28 328 2 HOH HOH . C 3 HOH A 29 329 73 HOH HOH . C 3 HOH A 30 330 88 HOH HOH . C 3 HOH A 31 331 90 HOH HOH . C 3 HOH A 32 332 43 HOH HOH . C 3 HOH A 33 333 65 HOH HOH . C 3 HOH A 34 334 19 HOH HOH . C 3 HOH A 35 335 10 HOH HOH . C 3 HOH A 36 336 23 HOH HOH . C 3 HOH A 37 337 28 HOH HOH . C 3 HOH A 38 338 4 HOH HOH . C 3 HOH A 39 339 21 HOH HOH . C 3 HOH A 40 340 105 HOH HOH . C 3 HOH A 41 341 72 HOH HOH . C 3 HOH A 42 342 14 HOH HOH . C 3 HOH A 43 343 9 HOH HOH . C 3 HOH A 44 344 18 HOH HOH . C 3 HOH A 45 345 101 HOH HOH . C 3 HOH A 46 346 17 HOH HOH . C 3 HOH A 47 347 103 HOH HOH . C 3 HOH A 48 348 113 HOH HOH . C 3 HOH A 49 349 25 HOH HOH . C 3 HOH A 50 350 79 HOH HOH . C 3 HOH A 51 351 39 HOH HOH . C 3 HOH A 52 352 78 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 56 HOH HOH . C 3 HOH A 55 355 100 HOH HOH . C 3 HOH A 56 356 38 HOH HOH . C 3 HOH A 57 357 98 HOH HOH . C 3 HOH A 58 358 81 HOH HOH . C 3 HOH A 59 359 87 HOH HOH . C 3 HOH A 60 360 86 HOH HOH . C 3 HOH A 61 361 51 HOH HOH . C 3 HOH A 62 362 1 HOH HOH . C 3 HOH A 63 363 48 HOH HOH . C 3 HOH A 64 364 37 HOH HOH . C 3 HOH A 65 365 12 HOH HOH . C 3 HOH A 66 366 57 HOH HOH . C 3 HOH A 67 367 16 HOH HOH . C 3 HOH A 68 368 70 HOH HOH . C 3 HOH A 69 369 58 HOH HOH . C 3 HOH A 70 370 89 HOH HOH . C 3 HOH A 71 371 30 HOH HOH . C 3 HOH A 72 372 97 HOH HOH . C 3 HOH A 73 373 76 HOH HOH . C 3 HOH A 74 374 104 HOH HOH . C 3 HOH A 75 375 13 HOH HOH . C 3 HOH A 76 376 95 HOH HOH . C 3 HOH A 77 377 80 HOH HOH . C 3 HOH A 78 378 92 HOH HOH . C 3 HOH A 79 379 20 HOH HOH . C 3 HOH A 80 380 83 HOH HOH . C 3 HOH A 81 381 5 HOH HOH . C 3 HOH A 82 382 84 HOH HOH . C 3 HOH A 83 383 102 HOH HOH . C 3 HOH A 84 384 111 HOH HOH . C 3 HOH A 85 385 85 HOH HOH . C 3 HOH A 86 386 60 HOH HOH . C 3 HOH A 87 387 93 HOH HOH . C 3 HOH A 88 388 64 HOH HOH . C 3 HOH A 89 389 40 HOH HOH . C 3 HOH A 90 390 77 HOH HOH . C 3 HOH A 91 391 41 HOH HOH . C 3 HOH A 92 392 66 HOH HOH . C 3 HOH A 93 393 82 HOH HOH . C 3 HOH A 94 394 107 HOH HOH . C 3 HOH A 95 395 67 HOH HOH . C 3 HOH A 96 396 44 HOH HOH . C 3 HOH A 97 397 120 HOH HOH . C 3 HOH A 98 398 59 HOH HOH . C 3 HOH A 99 399 118 HOH HOH . C 3 HOH A 100 400 68 HOH HOH . C 3 HOH A 101 401 46 HOH HOH . C 3 HOH A 102 402 115 HOH HOH . C 3 HOH A 103 403 45 HOH HOH . C 3 HOH A 104 404 91 HOH HOH . C 3 HOH A 105 405 119 HOH HOH . C 3 HOH A 106 406 122 HOH HOH . C 3 HOH A 107 407 121 HOH HOH . C 3 HOH A 108 408 114 HOH HOH . C 3 HOH A 109 409 50 HOH HOH . C 3 HOH A 110 410 109 HOH HOH . C 3 HOH A 111 411 108 HOH HOH . C 3 HOH A 112 412 33 HOH HOH . C 3 HOH A 113 413 61 HOH HOH . C 3 HOH A 114 414 55 HOH HOH . C 3 HOH A 115 415 49 HOH HOH . C 3 HOH A 116 416 116 HOH HOH . C 3 HOH A 117 417 110 HOH HOH . C 3 HOH A 118 418 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EGF . . . B 2 4.284 11.867 6.713 1 81.01 ? C1 EGF 201 A 1 HETATM 2 C C10 EGF . . . B 2 6.413 7.609 -4.325 1 32.11 ? C10 EGF 201 A 1 HETATM 3 C C11 EGF . . . B 2 5.277 8.634 -4.369 1 37.93 ? C11 EGF 201 A 1 HETATM 4 C C12 EGF . . . B 2 4.199 8.422 -3.301 1 48.59 ? C12 EGF 201 A 1 HETATM 5 C C13 EGF . . . B 2 3.404 7.125 -3.345 1 50.93 ? C13 EGF 201 A 1 HETATM 6 C C14 EGF . . . B 2 2.104 7.483 -2.643 1 49.17 ? C14 EGF 201 A 1 HETATM 7 C C15 EGF . . . B 2 3.11 9.478 -3.308 1 50.29 ? C15 EGF 201 A 1 HETATM 8 C C16 EGF . . . B 2 7.376 7.847 -5.49 1 29.17 ? C16 EGF 201 A 1 HETATM 9 C C17 EGF . . . B 2 7.917 6.952 -6.294 1 34.9 ? C17 EGF 201 A 1 HETATM 10 C C18 EGF . . . B 2 7.285 5.665 -6.612 1 45.43 ? C18 EGF 201 A 1 HETATM 11 C C19 EGF . . . B 2 8.023 3.426 -6.385 1 57.82 ? C19 EGF 201 A 1 HETATM 12 C C2 EGF . . . B 2 4.425 10.811 5.683 1 73.07 ? C2 EGF 201 A 1 HETATM 13 C C20 EGF . . . B 2 8.246 3.483 -4.899 1 52.6 ? C20 EGF 201 A 1 HETATM 14 C C21 EGF . . . B 2 9.177 2.806 -4.254 1 45.3 ? C21 EGF 201 A 1 HETATM 15 C C22 EGF . . . B 2 9.414 2.825 -2.779 1 50.83 ? C22 EGF 201 A 1 HETATM 16 C C23 EGF . . . B 2 10.166 3.999 -2.318 1 66.13 ? C23 EGF 201 A 1 HETATM 17 C C24 EGF . . . B 2 9.273 5.784 -0.972 1 60.43 ? C24 EGF 201 A 1 HETATM 18 C C25 EGF . . . B 2 10.456 6.442 -0.285 1 59.33 ? C25 EGF 201 A 1 HETATM 19 C C26 EGF . . . B 2 11.307 5.701 0.526 1 63.03 ? C26 EGF 201 A 1 HETATM 20 C C27 EGF . . . B 2 12.377 6.313 1.162 1 67.67 ? C27 EGF 201 A 1 HETATM 21 C C28 EGF . . . B 2 12.604 7.663 1 1 64.68 ? C28 EGF 201 A 1 HETATM 22 C C29 EGF . . . B 2 11.766 8.408 0.206 1 58.46 ? C29 EGF 201 A 1 HETATM 23 C C3 EGF . . . B 2 5.226 9.74 5.524 1 69.72 ? C3 EGF 201 A 1 HETATM 24 C C30 EGF . . . B 2 10.693 7.804 -0.434 1 60.01 ? C30 EGF 201 A 1 HETATM 25 C C31 EGF . . . B 2 4.327 5.504 1.26 1 52.38 ? C31 EGF 201 A 1 HETATM 26 C C32 EGF . . . B 2 3.644 4.857 2.454 1 59.98 ? C32 EGF 201 A 1 HETATM 27 C C33 EGF . . . B 2 3.3 6.142 0.341 1 54.08 ? C33 EGF 201 A 1 HETATM 28 C C4 EGF . . . B 2 4.827 9.147 4.321 1 66.56 ? C4 EGF 201 A 1 HETATM 29 C C5 EGF . . . B 2 5.373 7.937 3.69 1 65.26 ? C5 EGF 201 A 1 HETATM 30 C C6 EGF . . . B 2 5.391 6.525 1.709 1 59.61 ? C6 EGF 201 A 1 HETATM 31 C C7 EGF . . . B 2 6.159 7.108 0.522 1 63.64 ? C7 EGF 201 A 1 HETATM 32 C C8 EGF . . . B 2 8.058 6.729 -0.996 1 53.03 ? C8 EGF 201 A 1 HETATM 33 C C9 EGF . . . B 2 7.155 6.598 -2.224 1 39.62 ? C9 EGF 201 A 1 HETATM 34 N N1 EGF . . . B 2 4.832 7.601 2.513 1 64.83 ? N1 EGF 201 A 1 HETATM 35 N N2 EGF . . . B 2 7.32 6.512 0.24 1 62.29 ? N2 EGF 201 A 1 HETATM 36 N N3 EGF . . . B 2 7.114 7.65 -3.051 1 36.47 ? N3 EGF 201 A 1 HETATM 37 N N4 EGF . . . B 2 1.963 8.902 -2.954 1 54.65 ? N4 EGF 201 A 1 HETATM 38 N N5 EGF . . . B 2 3.841 9.813 3.773 1 64.95 ? N5 EGF 201 A 1 HETATM 39 O O1 EGF . . . B 2 6.279 7.274 4.213 1 58.59 ? O1 EGF 201 A 1 HETATM 40 O O2 EGF . . . B 2 5.721 8.07 -0.11 1 54.38 ? O2 EGF 201 A 1 HETATM 41 O O3 EGF . . . B 2 6.489 5.582 -2.406 1 34.66 ? O3 EGF 201 A 1 HETATM 42 O O4 EGF . . . B 2 3.266 10.678 -3.582 1 46.09 ? O4 EGF 201 A 1 HETATM 43 O O5 EGF . . . B 2 6.091 5.433 -6.589 1 48.45 ? O5 EGF 201 A 1 HETATM 44 O O6 EGF . . . B 2 8.205 4.747 -6.958 1 52.91 ? O6 EGF 201 A 1 HETATM 45 O O7 EGF . . . B 2 9.601 5.312 -2.28 1 71.33 ? O7 EGF 201 A 1 HETATM 46 O O8 EGF . . . B 2 3.578 10.886 4.637 1 66.85 ? O8 EGF 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 46 #