data_6LKH # _model_server_result.job_id mwvKQv2POrf3t6haViFk_A _model_server_result.datetime_utc '2024-11-19 18:40:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lkh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 6LKH # _exptl.entry_id 6LKH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.81 _cell.angle_gamma 90 _cell.entry_id 6LKH _cell.length_a 193.672 _cell.length_b 64.118 _cell.length_c 106.832 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LKH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms ALPHA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-alpha-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G6P sing 70 n n C1 O1 G6P sing 71 n n C1 O5 G6P sing 72 n n C1 H1 G6P sing 73 n n C2 C3 G6P sing 74 n n C2 O2 G6P sing 75 n n C2 H2 G6P sing 76 n n C3 C4 G6P sing 77 n n C3 O3 G6P sing 78 n n C3 H3 G6P sing 79 n n C4 C5 G6P sing 80 n n C4 O4 G6P sing 81 n n C4 H4 G6P sing 82 n n C5 C6 G6P sing 83 n n C5 O5 G6P sing 84 n n C5 H5 G6P sing 85 n n C6 O6 G6P sing 86 n n C6 H61 G6P sing 87 n n C6 H62 G6P sing 88 n n O1 HO1 G6P sing 89 n n O2 HO2 G6P sing 90 n n O3 HO3 G6P sing 91 n n O4 HO4 G6P sing 92 n n O6 P G6P sing 93 n n P O1P G6P sing 94 n n P O2P G6P sing 95 n n P O3P G6P doub 96 n n O1P HO1P G6P sing 97 n n O2P HO2P G6P sing 98 n n # _pdbx_chem_comp_identifier.comp_id G6P _pdbx_chem_comp_identifier.identifier a-D-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6LKH _atom_sites.fract_transf_matrix[1][1] 0.005163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000525 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 G6P A 1 401 1 G6P G6P . F 3 G6P B 1 401 2 G6P G6P . G 4 HOH A 1 501 1 HOH HOH . G 4 HOH A 2 502 17 HOH HOH . G 4 HOH A 3 503 2 HOH HOH . G 4 HOH A 4 504 7 HOH HOH . G 4 HOH A 5 505 8 HOH HOH . G 4 HOH A 6 506 14 HOH HOH . G 4 HOH A 7 507 36 HOH HOH . G 4 HOH A 8 508 16 HOH HOH . G 4 HOH A 9 509 24 HOH HOH . G 4 HOH A 10 510 44 HOH HOH . G 4 HOH A 11 511 32 HOH HOH . G 4 HOH A 12 512 51 HOH HOH . G 4 HOH A 13 513 50 HOH HOH . G 4 HOH A 14 514 35 HOH HOH . G 4 HOH A 15 515 38 HOH HOH . H 4 HOH B 1 501 37 HOH HOH . H 4 HOH B 2 502 47 HOH HOH . H 4 HOH B 3 503 5 HOH HOH . H 4 HOH B 4 504 3 HOH HOH . H 4 HOH B 5 505 34 HOH HOH . H 4 HOH B 6 506 40 HOH HOH . H 4 HOH B 7 507 42 HOH HOH . H 4 HOH B 8 508 28 HOH HOH . H 4 HOH B 9 509 29 HOH HOH . I 4 HOH D 1 301 41 HOH HOH . I 4 HOH D 2 302 4 HOH HOH . I 4 HOH D 3 303 12 HOH HOH . I 4 HOH D 4 304 39 HOH HOH . I 4 HOH D 5 305 13 HOH HOH . I 4 HOH D 6 306 15 HOH HOH . I 4 HOH D 7 307 11 HOH HOH . I 4 HOH D 8 308 23 HOH HOH . I 4 HOH D 9 309 18 HOH HOH . I 4 HOH D 10 310 26 HOH HOH . I 4 HOH D 11 311 20 HOH HOH . I 4 HOH D 12 312 46 HOH HOH . I 4 HOH D 13 313 45 HOH HOH . I 4 HOH D 14 314 33 HOH HOH . I 4 HOH D 15 315 43 HOH HOH . J 4 HOH C 1 301 9 HOH HOH . J 4 HOH C 2 302 10 HOH HOH . J 4 HOH C 3 303 30 HOH HOH . J 4 HOH C 4 304 27 HOH HOH . J 4 HOH C 5 305 22 HOH HOH . J 4 HOH C 6 306 49 HOH HOH . J 4 HOH C 7 307 25 HOH HOH . J 4 HOH C 8 308 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G6P . . . F 3 -70.076 -9.905 19.222 1 47.73 ? C1 G6P 401 B 1 HETATM 2 C C2 G6P . . . F 3 -69.741 -8.403 19.211 1 57.61 ? C2 G6P 401 B 1 HETATM 3 C C3 G6P . . . F 3 -70.213 -7.685 20.426 1 72.51 ? C3 G6P 401 B 1 HETATM 4 C C4 G6P . . . F 3 -71.609 -8.004 20.762 1 58.02 ? C4 G6P 401 B 1 HETATM 5 C C5 G6P . . . F 3 -71.892 -9.511 20.829 1 45.76 ? C5 G6P 401 B 1 HETATM 6 C C6 G6P . . . F 3 -73.036 -9.853 19.936 1 65.18 ? C6 G6P 401 B 1 HETATM 7 O O1 G6P . . . F 3 -68.91 -10.645 19.044 1 51.59 ? O1 G6P 401 B 1 HETATM 8 O O2 G6P . . . F 3 -68.315 -8.267 19.099 1 52.38 ? O2 G6P 401 B 1 HETATM 9 O O3 G6P . . . F 3 -70.147 -6.209 20.187 1 87.52 ? O3 G6P 401 B 1 HETATM 10 O O4 G6P . . . F 3 -71.913 -7.445 22.066 1 72.16 ? O4 G6P 401 B 1 HETATM 11 O O5 G6P . . . F 3 -70.712 -10.327 20.47 1 70.15 ? O5 G6P 401 B 1 HETATM 12 O O6 G6P . . . F 3 -73.869 -10.774 20.583 1 252.97 ? O6 G6P 401 B 1 HETATM 13 P P G6P . . . F 3 -74.586 -11.878 19.554 1 387.42 ? P G6P 401 B 1 HETATM 14 O O1P G6P . . . F 3 -75.597 -12.726 20.197 1 229.08 ? O1P G6P 401 B 1 HETATM 15 O O2P G6P . . . F 3 -73.449 -12.662 18.978 1 188.94 ? O2P G6P 401 B 1 HETATM 16 O O3P G6P . . . F 3 -75.208 -11.064 18.439 1 125.03 ? O3P G6P 401 B 1 HETATM 17 H H1 G6P . . . F 3 -70.683 -10.092 18.489 1 58.56 ? H1 G6P 401 B 1 HETATM 18 H H2 G6P . . . F 3 -70.157 -7.999 18.433 1 70.41 ? H2 G6P 401 B 1 HETATM 19 H H3 G6P . . . F 3 -69.645 -7.919 21.176 1 88.29 ? H3 G6P 401 B 1 HETATM 20 H H4 G6P . . . F 3 -72.195 -7.606 20.099 1 70.9 ? H4 G6P 401 B 1 HETATM 21 H H5 G6P . . . F 3 -72.14 -9.728 21.741 1 56.19 ? H5 G6P 401 B 1 HETATM 22 H H61 G6P . . . F 3 -72.697 -10.248 19.117 1 79.5 ? H61 G6P 401 B 1 HETATM 23 H H62 G6P . . . F 3 -73.539 -9.05 19.727 1 79.5 ? H62 G6P 401 B 1 HETATM 24 H HO1 G6P . . . F 3 -69.11 -11.44 18.817 1 63.19 ? HO1 G6P 401 B 1 HETATM 25 H HO2 G6P . . . F 3 -68.129 -7.662 18.531 1 64.13 ? HO2 G6P 401 B 1 HETATM 26 H HO3 G6P . . . F 3 -69.65 -5.847 20.774 1 106.3 ? HO3 G6P 401 B 1 HETATM 27 H HO4 G6P . . . F 3 -72.742 -7.538 22.227 1 87.87 ? HO4 G6P 401 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 27 #