data_6LKI # _model_server_result.job_id 8G9wK5nwInT28kZnbUurrQ _model_server_result.datetime_utc '2025-06-30 04:36:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6LKI # _exptl.entry_id 6LKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LKI _cell.length_a 95.231 _cell.length_b 106.642 _cell.length_c 120.331 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 224 n n C1 O1B MLA doub 225 n n C1 C2 MLA sing 226 n n O1A H1A MLA sing 227 n n C2 C3 MLA sing 228 n n C2 HC21 MLA sing 229 n n C2 HC22 MLA sing 230 n n C3 O3A MLA doub 231 n n C3 O3B MLA sing 232 n n O3B H3B MLA sing 233 n n # _atom_sites.entry_id 6LKI _atom_sites.fract_transf_matrix[1][1] 0.010501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MLA A 1 401 1 MLA MLA . D 4 HOH A 1 501 160 HOH HOH . D 4 HOH A 2 502 206 HOH HOH . D 4 HOH A 3 503 59 HOH HOH . D 4 HOH A 4 504 218 HOH HOH . D 4 HOH A 5 505 54 HOH HOH . D 4 HOH A 6 506 251 HOH HOH . D 4 HOH A 7 507 239 HOH HOH . D 4 HOH A 8 508 22 HOH HOH . D 4 HOH A 9 509 65 HOH HOH . D 4 HOH A 10 510 53 HOH HOH . D 4 HOH A 11 511 111 HOH HOH . D 4 HOH A 12 512 196 HOH HOH . D 4 HOH A 13 513 164 HOH HOH . D 4 HOH A 14 514 102 HOH HOH . D 4 HOH A 15 515 73 HOH HOH . D 4 HOH A 16 516 35 HOH HOH . D 4 HOH A 17 517 79 HOH HOH . D 4 HOH A 18 518 1 HOH HOH . D 4 HOH A 19 519 45 HOH HOH . D 4 HOH A 20 520 87 HOH HOH . D 4 HOH A 21 521 3 HOH HOH . D 4 HOH A 22 522 152 HOH HOH . D 4 HOH A 23 523 4 HOH HOH . D 4 HOH A 24 524 2 HOH HOH . D 4 HOH A 25 525 39 HOH HOH . D 4 HOH A 26 526 122 HOH HOH . D 4 HOH A 27 527 132 HOH HOH . D 4 HOH A 28 528 56 HOH HOH . D 4 HOH A 29 529 176 HOH HOH . D 4 HOH A 30 530 97 HOH HOH . D 4 HOH A 31 531 142 HOH HOH . D 4 HOH A 32 532 258 HOH HOH . D 4 HOH A 33 533 249 HOH HOH . D 4 HOH A 34 534 92 HOH HOH . D 4 HOH A 35 535 198 HOH HOH . D 4 HOH A 36 536 150 HOH HOH . D 4 HOH A 37 537 12 HOH HOH . D 4 HOH A 38 538 50 HOH HOH . D 4 HOH A 39 539 291 HOH HOH . D 4 HOH A 40 540 227 HOH HOH . D 4 HOH A 41 541 169 HOH HOH . D 4 HOH A 42 542 266 HOH HOH . D 4 HOH A 43 543 86 HOH HOH . D 4 HOH A 44 544 123 HOH HOH . D 4 HOH A 45 545 140 HOH HOH . D 4 HOH A 46 546 47 HOH HOH . D 4 HOH A 47 547 13 HOH HOH . D 4 HOH A 48 548 66 HOH HOH . D 4 HOH A 49 549 57 HOH HOH . D 4 HOH A 50 550 265 HOH HOH . D 4 HOH A 51 551 289 HOH HOH . D 4 HOH A 52 552 185 HOH HOH . D 4 HOH A 53 553 44 HOH HOH . D 4 HOH A 54 554 252 HOH HOH . D 4 HOH A 55 555 172 HOH HOH . D 4 HOH A 56 556 113 HOH HOH . D 4 HOH A 57 557 106 HOH HOH . D 4 HOH A 58 558 82 HOH HOH . D 4 HOH A 59 559 151 HOH HOH . D 4 HOH A 60 560 271 HOH HOH . D 4 HOH A 61 561 302 HOH HOH . D 4 HOH A 62 562 287 HOH HOH . D 4 HOH A 63 563 215 HOH HOH . D 4 HOH A 64 564 38 HOH HOH . D 4 HOH A 65 565 55 HOH HOH . D 4 HOH A 66 566 6 HOH HOH . D 4 HOH A 67 567 109 HOH HOH . D 4 HOH A 68 568 14 HOH HOH . D 4 HOH A 69 569 293 HOH HOH . D 4 HOH A 70 570 136 HOH HOH . D 4 HOH A 71 571 110 HOH HOH . D 4 HOH A 72 572 235 HOH HOH . D 4 HOH A 73 573 68 HOH HOH . D 4 HOH A 74 574 127 HOH HOH . D 4 HOH A 75 575 16 HOH HOH . D 4 HOH A 76 576 104 HOH HOH . D 4 HOH A 77 577 147 HOH HOH . D 4 HOH A 78 578 7 HOH HOH . D 4 HOH A 79 579 5 HOH HOH . D 4 HOH A 80 580 159 HOH HOH . D 4 HOH A 81 581 17 HOH HOH . D 4 HOH A 82 582 23 HOH HOH . D 4 HOH A 83 583 74 HOH HOH . D 4 HOH A 84 584 11 HOH HOH . D 4 HOH A 85 585 63 HOH HOH . D 4 HOH A 86 586 220 HOH HOH . D 4 HOH A 87 587 222 HOH HOH . D 4 HOH A 88 588 69 HOH HOH . D 4 HOH A 89 589 48 HOH HOH . D 4 HOH A 90 590 232 HOH HOH . D 4 HOH A 91 591 78 HOH HOH . D 4 HOH A 92 592 8 HOH HOH . D 4 HOH A 93 593 24 HOH HOH . D 4 HOH A 94 594 285 HOH HOH . D 4 HOH A 95 595 184 HOH HOH . D 4 HOH A 96 596 107 HOH HOH . D 4 HOH A 97 597 135 HOH HOH . D 4 HOH A 98 598 182 HOH HOH . D 4 HOH A 99 599 29 HOH HOH . D 4 HOH A 100 600 301 HOH HOH . D 4 HOH A 101 601 187 HOH HOH . D 4 HOH A 102 602 58 HOH HOH . D 4 HOH A 103 603 190 HOH HOH . D 4 HOH A 104 604 93 HOH HOH . D 4 HOH A 105 605 237 HOH HOH . D 4 HOH A 106 606 183 HOH HOH . D 4 HOH A 107 607 272 HOH HOH . D 4 HOH A 108 608 167 HOH HOH . D 4 HOH A 109 609 197 HOH HOH . D 4 HOH A 110 610 194 HOH HOH . D 4 HOH A 111 611 71 HOH HOH . D 4 HOH A 112 612 168 HOH HOH . D 4 HOH A 113 613 282 HOH HOH . D 4 HOH A 114 614 138 HOH HOH . D 4 HOH A 115 615 84 HOH HOH . D 4 HOH A 116 616 304 HOH HOH . D 4 HOH A 117 617 26 HOH HOH . D 4 HOH A 118 618 60 HOH HOH . D 4 HOH A 119 619 100 HOH HOH . D 4 HOH A 120 620 105 HOH HOH . D 4 HOH A 121 621 165 HOH HOH . D 4 HOH A 122 622 32 HOH HOH . D 4 HOH A 123 623 245 HOH HOH . D 4 HOH A 124 624 216 HOH HOH . D 4 HOH A 125 625 85 HOH HOH . D 4 HOH A 126 626 52 HOH HOH . D 4 HOH A 127 627 270 HOH HOH . D 4 HOH A 128 628 241 HOH HOH . D 4 HOH A 129 629 124 HOH HOH . D 4 HOH A 130 630 274 HOH HOH . D 4 HOH A 131 631 37 HOH HOH . D 4 HOH A 132 632 88 HOH HOH . D 4 HOH A 133 633 161 HOH HOH . D 4 HOH A 134 634 31 HOH HOH . D 4 HOH A 135 635 91 HOH HOH . D 4 HOH A 136 636 224 HOH HOH . D 4 HOH A 137 637 34 HOH HOH . D 4 HOH A 138 638 83 HOH HOH . D 4 HOH A 139 639 28 HOH HOH . D 4 HOH A 140 640 80 HOH HOH . D 4 HOH A 141 641 117 HOH HOH . D 4 HOH A 142 642 42 HOH HOH . D 4 HOH A 143 643 209 HOH HOH . D 4 HOH A 144 644 233 HOH HOH . D 4 HOH A 145 645 51 HOH HOH . D 4 HOH A 146 646 203 HOH HOH . D 4 HOH A 147 647 21 HOH HOH . D 4 HOH A 148 648 103 HOH HOH . D 4 HOH A 149 649 268 HOH HOH . D 4 HOH A 150 650 248 HOH HOH . D 4 HOH A 151 651 242 HOH HOH . D 4 HOH A 152 652 195 HOH HOH . D 4 HOH A 153 653 133 HOH HOH . D 4 HOH A 154 654 134 HOH HOH . D 4 HOH A 155 655 36 HOH HOH . D 4 HOH A 156 656 157 HOH HOH . D 4 HOH A 157 657 153 HOH HOH . D 4 HOH A 158 658 247 HOH HOH . D 4 HOH A 159 659 76 HOH HOH . D 4 HOH A 160 660 179 HOH HOH . D 4 HOH A 161 661 77 HOH HOH . D 4 HOH A 162 662 261 HOH HOH . D 4 HOH A 163 663 126 HOH HOH . D 4 HOH A 164 664 308 HOH HOH . D 4 HOH A 165 665 260 HOH HOH . D 4 HOH A 166 666 62 HOH HOH . D 4 HOH A 167 667 221 HOH HOH . D 4 HOH A 168 668 277 HOH HOH . D 4 HOH A 169 669 115 HOH HOH . D 4 HOH A 170 670 201 HOH HOH . D 4 HOH A 171 671 180 HOH HOH . D 4 HOH A 172 672 114 HOH HOH . D 4 HOH A 173 673 225 HOH HOH . D 4 HOH A 174 674 101 HOH HOH . D 4 HOH A 175 675 244 HOH HOH . D 4 HOH A 176 676 146 HOH HOH . D 4 HOH A 177 677 193 HOH HOH . D 4 HOH A 178 678 108 HOH HOH . D 4 HOH A 179 679 240 HOH HOH . D 4 HOH A 180 680 154 HOH HOH . D 4 HOH A 181 681 171 HOH HOH . D 4 HOH A 182 682 303 HOH HOH . D 4 HOH A 183 683 298 HOH HOH . D 4 HOH A 184 684 307 HOH HOH . D 4 HOH A 185 685 170 HOH HOH . D 4 HOH A 186 686 278 HOH HOH . D 4 HOH A 187 687 279 HOH HOH . D 4 HOH A 188 688 305 HOH HOH . D 4 HOH A 189 689 143 HOH HOH . D 4 HOH A 190 690 295 HOH HOH . D 4 HOH A 191 691 144 HOH HOH . D 4 HOH A 192 692 230 HOH HOH . D 4 HOH A 193 693 166 HOH HOH . D 4 HOH A 194 694 120 HOH HOH . D 4 HOH A 195 695 178 HOH HOH . D 4 HOH A 196 696 186 HOH HOH . D 4 HOH A 197 697 213 HOH HOH . D 4 HOH A 198 698 121 HOH HOH . D 4 HOH A 199 699 200 HOH HOH . D 4 HOH A 200 700 275 HOH HOH . D 4 HOH A 201 701 280 HOH HOH . D 4 HOH A 202 702 137 HOH HOH . D 4 HOH A 203 703 294 HOH HOH . D 4 HOH A 204 704 174 HOH HOH . D 4 HOH A 205 705 130 HOH HOH . D 4 HOH A 206 706 246 HOH HOH . D 4 HOH A 207 707 297 HOH HOH . D 4 HOH A 208 708 238 HOH HOH . D 4 HOH A 209 709 210 HOH HOH . D 4 HOH A 210 710 219 HOH HOH . D 4 HOH A 211 711 173 HOH HOH . D 4 HOH A 212 712 283 HOH HOH . D 4 HOH A 213 713 286 HOH HOH . D 4 HOH A 214 714 175 HOH HOH . D 4 HOH A 215 715 300 HOH HOH . E 4 HOH B 1 301 243 HOH HOH . E 4 HOH B 2 302 309 HOH HOH . E 4 HOH B 3 303 131 HOH HOH . E 4 HOH B 4 304 188 HOH HOH . E 4 HOH B 5 305 64 HOH HOH . E 4 HOH B 6 306 30 HOH HOH . E 4 HOH B 7 307 27 HOH HOH . E 4 HOH B 8 308 116 HOH HOH . E 4 HOH B 9 309 139 HOH HOH . E 4 HOH B 10 310 10 HOH HOH . E 4 HOH B 11 311 128 HOH HOH . E 4 HOH B 12 312 90 HOH HOH . E 4 HOH B 13 313 163 HOH HOH . E 4 HOH B 14 314 95 HOH HOH . E 4 HOH B 15 315 250 HOH HOH . E 4 HOH B 16 316 46 HOH HOH . E 4 HOH B 17 317 19 HOH HOH . E 4 HOH B 18 318 18 HOH HOH . E 4 HOH B 19 319 70 HOH HOH . E 4 HOH B 20 320 234 HOH HOH . E 4 HOH B 21 321 72 HOH HOH . E 4 HOH B 22 322 141 HOH HOH . E 4 HOH B 23 323 264 HOH HOH . E 4 HOH B 24 324 20 HOH HOH . E 4 HOH B 25 325 41 HOH HOH . E 4 HOH B 26 326 81 HOH HOH . E 4 HOH B 27 327 191 HOH HOH . E 4 HOH B 28 328 75 HOH HOH . E 4 HOH B 29 329 40 HOH HOH . E 4 HOH B 30 330 15 HOH HOH . E 4 HOH B 31 331 155 HOH HOH . E 4 HOH B 32 332 296 HOH HOH . E 4 HOH B 33 333 262 HOH HOH . E 4 HOH B 34 334 181 HOH HOH . E 4 HOH B 35 335 228 HOH HOH . E 4 HOH B 36 336 33 HOH HOH . E 4 HOH B 37 337 89 HOH HOH . E 4 HOH B 38 338 49 HOH HOH . E 4 HOH B 39 339 199 HOH HOH . E 4 HOH B 40 340 96 HOH HOH . E 4 HOH B 41 341 98 HOH HOH . E 4 HOH B 42 342 306 HOH HOH . E 4 HOH B 43 343 205 HOH HOH . E 4 HOH B 44 344 119 HOH HOH . E 4 HOH B 45 345 9 HOH HOH . E 4 HOH B 46 346 273 HOH HOH . E 4 HOH B 47 347 204 HOH HOH . E 4 HOH B 48 348 192 HOH HOH . E 4 HOH B 49 349 299 HOH HOH . E 4 HOH B 50 350 231 HOH HOH . E 4 HOH B 51 351 61 HOH HOH . E 4 HOH B 52 352 156 HOH HOH . E 4 HOH B 53 353 94 HOH HOH . E 4 HOH B 54 354 202 HOH HOH . E 4 HOH B 55 355 148 HOH HOH . E 4 HOH B 56 356 99 HOH HOH . E 4 HOH B 57 357 125 HOH HOH . E 4 HOH B 58 358 284 HOH HOH . E 4 HOH B 59 359 149 HOH HOH . E 4 HOH B 60 360 67 HOH HOH . E 4 HOH B 61 361 226 HOH HOH . E 4 HOH B 62 362 129 HOH HOH . E 4 HOH B 63 363 145 HOH HOH . E 4 HOH B 64 364 263 HOH HOH . E 4 HOH B 65 365 177 HOH HOH . E 4 HOH B 66 366 259 HOH HOH . E 4 HOH B 67 367 112 HOH HOH . E 4 HOH B 68 368 229 HOH HOH . E 4 HOH B 69 369 290 HOH HOH . E 4 HOH B 70 370 25 HOH HOH . E 4 HOH B 71 371 189 HOH HOH . E 4 HOH B 72 372 254 HOH HOH . E 4 HOH B 73 373 43 HOH HOH . E 4 HOH B 74 374 257 HOH HOH . E 4 HOH B 75 375 253 HOH HOH . E 4 HOH B 76 376 267 HOH HOH . E 4 HOH B 77 377 292 HOH HOH . E 4 HOH B 78 378 223 HOH HOH . E 4 HOH B 79 379 158 HOH HOH . E 4 HOH B 80 380 281 HOH HOH . E 4 HOH B 81 381 217 HOH HOH . E 4 HOH B 82 382 214 HOH HOH . E 4 HOH B 83 383 269 HOH HOH . E 4 HOH B 84 384 211 HOH HOH . E 4 HOH B 85 385 118 HOH HOH . E 4 HOH B 86 386 207 HOH HOH . E 4 HOH B 87 387 255 HOH HOH . E 4 HOH B 88 388 236 HOH HOH . E 4 HOH B 89 389 208 HOH HOH . E 4 HOH B 90 390 212 HOH HOH . E 4 HOH B 91 391 276 HOH HOH . E 4 HOH B 92 392 256 HOH HOH . E 4 HOH B 93 393 288 HOH HOH . E 4 HOH B 94 394 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . C 3 -4.5 -25.274 2.148 1 39.29 ? C1 MLA 401 A 1 HETATM 2 O O1A MLA . . . C 3 -5.418 -26.134 2.085 1 39.85 ? O1A MLA 401 A 1 HETATM 3 O O1B MLA . . . C 3 -3.699 -25.138 1.186 1 37.54 ? O1B MLA 401 A 1 HETATM 4 C C2 MLA . . . C 3 -4.357 -24.398 3.391 1 40.58 ? C2 MLA 401 A 1 HETATM 5 C C3 MLA . . . C 3 -2.874 -24.166 3.667 1 40.24 ? C3 MLA 401 A 1 HETATM 6 O O3A MLA . . . C 3 -2.386 -23.008 3.581 1 37.22 ? O3A MLA 401 A 1 HETATM 7 O O3B MLA . . . C 3 -2.137 -25.137 3.981 1 44.02 ? O3B MLA 401 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 471 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #