data_6LKJ # _model_server_result.job_id -PMUs8memHB8HxNN0IB_aQ _model_server_result.datetime_utc '2024-11-19 15:32:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6LKJ # _exptl.entry_id 6LKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LKJ _cell.length_a 52.164 _cell.length_b 67.157 _cell.length_c 87.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id BGP _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-GALACTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-galactose;6-O-phosphono-D-galactose;6-O-phosphono-galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BGP sing 70 n n C1 O1 BGP sing 71 n n C1 O5 BGP sing 72 n n C1 H1 BGP sing 73 n n C2 C3 BGP sing 74 n n C2 O2 BGP sing 75 n n C2 H2 BGP sing 76 n n C3 C4 BGP sing 77 n n C3 O3 BGP sing 78 n n C3 H3 BGP sing 79 n n C4 C5 BGP sing 80 n n C4 O4 BGP sing 81 n n C4 H4 BGP sing 82 n n C5 C6 BGP sing 83 n n C5 O5 BGP sing 84 n n C5 H5 BGP sing 85 n n C6 O6 BGP sing 86 n n C6 H61 BGP sing 87 n n C6 H62 BGP sing 88 n n O1 HO1 BGP sing 89 n n O2 HO2 BGP sing 90 n n O3 HO3 BGP sing 91 n n O4 HO4 BGP sing 92 n n O6 P BGP sing 93 n n P O1P BGP doub 94 n n P O2P BGP sing 95 n n P O3P BGP sing 96 n n O2P HOP2 BGP sing 97 n n O3P HOP3 BGP sing 98 n n # _pdbx_chem_comp_identifier.comp_id BGP _pdbx_chem_comp_identifier.identifier b-D-Galp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6LKJ _atom_sites.fract_transf_matrix[1][1] 0.01917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BGP A 1 401 1 BGP BGP . C 3 HOH A 1 501 90 HOH HOH . C 3 HOH A 2 502 121 HOH HOH . C 3 HOH A 3 503 7 HOH HOH . C 3 HOH A 4 504 92 HOH HOH . C 3 HOH A 5 505 5 HOH HOH . C 3 HOH A 6 506 44 HOH HOH . C 3 HOH A 7 507 111 HOH HOH . C 3 HOH A 8 508 123 HOH HOH . C 3 HOH A 9 509 113 HOH HOH . C 3 HOH A 10 510 81 HOH HOH . C 3 HOH A 11 511 15 HOH HOH . C 3 HOH A 12 512 62 HOH HOH . C 3 HOH A 13 513 37 HOH HOH . C 3 HOH A 14 514 63 HOH HOH . C 3 HOH A 15 515 26 HOH HOH . C 3 HOH A 16 516 65 HOH HOH . C 3 HOH A 17 517 28 HOH HOH . C 3 HOH A 18 518 89 HOH HOH . C 3 HOH A 19 519 99 HOH HOH . C 3 HOH A 20 520 40 HOH HOH . C 3 HOH A 21 521 50 HOH HOH . C 3 HOH A 22 522 114 HOH HOH . C 3 HOH A 23 523 75 HOH HOH . C 3 HOH A 24 524 70 HOH HOH . C 3 HOH A 25 525 60 HOH HOH . C 3 HOH A 26 526 126 HOH HOH . C 3 HOH A 27 527 59 HOH HOH . C 3 HOH A 28 528 29 HOH HOH . C 3 HOH A 29 529 49 HOH HOH . C 3 HOH A 30 530 19 HOH HOH . C 3 HOH A 31 531 84 HOH HOH . C 3 HOH A 32 532 24 HOH HOH . C 3 HOH A 33 533 57 HOH HOH . C 3 HOH A 34 534 77 HOH HOH . C 3 HOH A 35 535 73 HOH HOH . C 3 HOH A 36 536 32 HOH HOH . C 3 HOH A 37 537 46 HOH HOH . C 3 HOH A 38 538 12 HOH HOH . C 3 HOH A 39 539 74 HOH HOH . C 3 HOH A 40 540 30 HOH HOH . C 3 HOH A 41 541 10 HOH HOH . C 3 HOH A 42 542 68 HOH HOH . C 3 HOH A 43 543 52 HOH HOH . C 3 HOH A 44 544 48 HOH HOH . C 3 HOH A 45 545 14 HOH HOH . C 3 HOH A 46 546 22 HOH HOH . C 3 HOH A 47 547 35 HOH HOH . C 3 HOH A 48 548 51 HOH HOH . C 3 HOH A 49 549 13 HOH HOH . C 3 HOH A 50 550 109 HOH HOH . C 3 HOH A 51 551 3 HOH HOH . C 3 HOH A 52 552 1 HOH HOH . C 3 HOH A 53 553 20 HOH HOH . C 3 HOH A 54 554 6 HOH HOH . C 3 HOH A 55 555 106 HOH HOH . C 3 HOH A 56 556 16 HOH HOH . C 3 HOH A 57 557 36 HOH HOH . C 3 HOH A 58 558 33 HOH HOH . C 3 HOH A 59 559 56 HOH HOH . C 3 HOH A 60 560 27 HOH HOH . C 3 HOH A 61 561 21 HOH HOH . C 3 HOH A 62 562 34 HOH HOH . C 3 HOH A 63 563 25 HOH HOH . C 3 HOH A 64 564 110 HOH HOH . C 3 HOH A 65 565 78 HOH HOH . C 3 HOH A 66 566 2 HOH HOH . C 3 HOH A 67 567 47 HOH HOH . C 3 HOH A 68 568 17 HOH HOH . C 3 HOH A 69 569 58 HOH HOH . C 3 HOH A 70 570 67 HOH HOH . C 3 HOH A 71 571 82 HOH HOH . C 3 HOH A 72 572 93 HOH HOH . C 3 HOH A 73 573 120 HOH HOH . C 3 HOH A 74 574 54 HOH HOH . C 3 HOH A 75 575 108 HOH HOH . C 3 HOH A 76 576 38 HOH HOH . C 3 HOH A 77 577 31 HOH HOH . C 3 HOH A 78 578 125 HOH HOH . C 3 HOH A 79 579 83 HOH HOH . C 3 HOH A 80 580 61 HOH HOH . C 3 HOH A 81 581 45 HOH HOH . C 3 HOH A 82 582 79 HOH HOH . C 3 HOH A 83 583 4 HOH HOH . C 3 HOH A 84 584 23 HOH HOH . C 3 HOH A 85 585 112 HOH HOH . C 3 HOH A 86 586 128 HOH HOH . C 3 HOH A 87 587 43 HOH HOH . C 3 HOH A 88 588 104 HOH HOH . C 3 HOH A 89 589 95 HOH HOH . C 3 HOH A 90 590 76 HOH HOH . C 3 HOH A 91 591 41 HOH HOH . C 3 HOH A 92 592 107 HOH HOH . C 3 HOH A 93 593 98 HOH HOH . C 3 HOH A 94 594 91 HOH HOH . C 3 HOH A 95 595 42 HOH HOH . C 3 HOH A 96 596 69 HOH HOH . C 3 HOH A 97 597 85 HOH HOH . C 3 HOH A 98 598 102 HOH HOH . C 3 HOH A 99 599 119 HOH HOH . C 3 HOH A 100 600 39 HOH HOH . C 3 HOH A 101 601 116 HOH HOH . C 3 HOH A 102 602 87 HOH HOH . C 3 HOH A 103 603 96 HOH HOH . C 3 HOH A 104 604 100 HOH HOH . C 3 HOH A 105 605 53 HOH HOH . C 3 HOH A 106 606 86 HOH HOH . C 3 HOH A 107 607 11 HOH HOH . C 3 HOH A 108 608 115 HOH HOH . C 3 HOH A 109 609 94 HOH HOH . C 3 HOH A 110 610 55 HOH HOH . C 3 HOH A 111 611 105 HOH HOH . C 3 HOH A 112 612 8 HOH HOH . C 3 HOH A 113 613 97 HOH HOH . C 3 HOH A 114 614 124 HOH HOH . C 3 HOH A 115 615 18 HOH HOH . C 3 HOH A 116 616 80 HOH HOH . C 3 HOH A 117 617 101 HOH HOH . C 3 HOH A 118 618 66 HOH HOH . C 3 HOH A 119 619 9 HOH HOH . C 3 HOH A 120 620 88 HOH HOH . C 3 HOH A 121 621 118 HOH HOH . C 3 HOH A 122 622 122 HOH HOH . C 3 HOH A 123 623 72 HOH HOH . C 3 HOH A 124 624 71 HOH HOH . C 3 HOH A 125 625 64 HOH HOH . C 3 HOH A 126 626 103 HOH HOH . C 3 HOH A 127 627 117 HOH HOH . C 3 HOH A 128 628 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BGP . . . B 2 3.212 -0.446 0.936 1 7.17 ? C1 BGP 401 A 1 HETATM 2 C C2 BGP . . . B 2 4.156 0.048 2.019 1 8.04 ? C2 BGP 401 A 1 HETATM 3 C C3 BGP . . . B 2 3.929 -0.682 3.295 1 10.14 ? C3 BGP 401 A 1 HETATM 4 C C4 BGP . . . B 2 2.494 -0.591 3.734 1 12.63 ? C4 BGP 401 A 1 HETATM 5 C C5 BGP . . . B 2 1.554 -1.081 2.633 1 8.74 ? C5 BGP 401 A 1 HETATM 6 C C6 BGP . . . B 2 0.13 -0.934 3.06 1 11.31 ? C6 BGP 401 A 1 HETATM 7 O O1 BGP . . . B 2 3.385 0.274 -0.192 1 9.85 ? O1 BGP 401 A 1 HETATM 8 O O2 BGP . . . B 2 5.525 -0.15 1.589 1 8.34 ? O2 BGP 401 A 1 HETATM 9 O O3 BGP . . . B 2 4.761 -0.116 4.328 1 11.3 ? O3 BGP 401 A 1 HETATM 10 O O4 BGP . . . B 2 2.207 0.785 4.029 1 9.42 ? O4 BGP 401 A 1 HETATM 11 O O5 BGP . . . B 2 1.774 -0.336 1.383 1 9.37 ? O5 BGP 401 A 1 HETATM 12 O O6 BGP . . . B 2 -0.172 0.404 3.229 1 10.61 ? O6 BGP 401 A 1 HETATM 13 P P BGP . . . B 2 -1.459 1.035 2.417 1 10.61 ? P BGP 401 A 1 HETATM 14 O O1P BGP . . . B 2 -1.186 1.029 0.936 1 7.61 ? O1P BGP 401 A 1 HETATM 15 O O2P BGP . . . B 2 -1.675 2.456 2.885 1 12.76 ? O2P BGP 401 A 1 HETATM 16 O O3P BGP . . . B 2 -2.69 0.221 2.71 1 9.69 ? O3P BGP 401 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 878 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #