data_6LKP # _model_server_result.job_id qfJ2vhNFHN3AQDLurLYiiQ _model_server_result.datetime_utc '2024-10-19 19:42:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":204}' # _entry.id 6LKP # _exptl.entry_id 6LKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LKP _cell.length_a 92.787 _cell.length_b 92.787 _cell.length_c 261.12 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall 'P 4cw 2c' _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 261.12 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 K N N ? 2 L N N ? 2 O N N ? 2 P N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 X N N ? 2 Y N N ? 2 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 51 A HIS 51 1_555 H ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc2 A NE2 HIS 63 A HIS 63 1_555 K ZN ZN . A ZN 205 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 A NE2 HIS 78 A HIS 78 1_555 H ZN ZN . A ZN 202 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc4 A OE2 GLU 82 A GLU 82 1_555 H ZN ZN . A ZN 202 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? metalc ? metalc5 A OE1 GLU 82 A GLU 82 1_555 K ZN ZN . A ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc6 A OD1 ASN 85 A ASN 85 1_555 J FE FE . A FE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc7 A O GLU 100 A GLU 100 1_555 I FE FE . A FE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc8 A NE2 HIS 164 A HIS 164 1_555 G ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc9 G ZN ZN . A ZN 201 1_555 B NE2 HIS 63 B HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc10 G ZN ZN . A ZN 201 1_555 C OE1 GLU 82 C GLU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc11 K ZN ZN . A ZN 205 1_555 D NE2 HIS 164 D HIS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc12 B NE2 HIS 51 B HIS 51 1_555 O ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc13 B NE2 HIS 78 B HIS 78 1_555 L ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc14 B OE2 GLU 82 B GLU 82 1_555 L ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc15 B OE1 GLU 82 B GLU 82 1_555 P ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc16 B OD1 ASN 85 B ASN 85 1_555 N FE FE . B FE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc17 B O GLU 100 B GLU 100 1_555 M FE FE . B FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc18 B NE2 HIS 164 B HIS 164 1_555 U ZN ZN . D ZN 202 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc19 L ZN ZN . B ZN 201 1_555 C NE2 HIS 51 C HIS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc20 O ZN ZN . B ZN 204 1_555 C NE2 HIS 78 C HIS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc21 O ZN ZN . B ZN 204 1_555 C OE2 GLU 82 C GLU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc22 P ZN ZN . B ZN 205 1_555 C NE2 HIS 63 C HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc23 P ZN ZN . B ZN 205 1_555 F NE2 HIS 164 F HIS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc24 C O ASN 85 C ASN 85 1_555 R FE FE . C FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc25 C OD1 ASN 85 C ASN 85 1_555 R FE FE . C FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc26 C O GLU 100 C GLU 100 1_555 Q FE FE . C FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc27 C NE2 HIS 164 C HIS 164 1_555 S ZN ZN . C ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc28 S ZN ZN . C ZN 203 1_555 D OE2 GLU 82 D GLU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc29 S ZN ZN . C ZN 203 1_555 E NE2 HIS 63 E HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? metalc ? metalc30 D NE2 HIS 51 D HIS 51 1_555 X ZN ZN . D ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc31 D NE2 HIS 63 D HIS 63 1_555 U ZN ZN . D ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc32 D NE2 HIS 78 D HIS 78 1_555 T ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc33 D OE1 GLU 82 D GLU 82 1_555 T ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc34 D OD1 ASN 85 D ASN 85 1_555 W FE FE . D FE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc35 D O GLU 100 D GLU 100 1_555 V FE FE . D FE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc36 T ZN ZN . D ZN 201 1_555 E NE2 HIS 51 E HIS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc37 U ZN ZN . D ZN 202 1_555 E OE2 GLU 82 E GLU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc38 X ZN ZN . D ZN 205 1_555 E NE2 HIS 78 E HIS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc39 X ZN ZN . D ZN 205 1_555 E OE1 GLU 82 E GLU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc40 E OD1 ASN 85 E ASN 85 1_555 AA FE FE . E FE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc41 E O GLU 100 E GLU 100 1_555 Z FE FE . E FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc42 E NE2 HIS 164 E HIS 164 1_555 Y ZN ZN . E ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc43 Y ZN ZN . E ZN 201 1_555 F NE2 HIS 63 F HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc44 Y ZN ZN . E ZN 201 5_556 F OE2 GLU 82 F GLU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc45 F NE2 HIS 51 F HIS 51 1_555 BA ZN ZN . F ZN 201 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc46 F OE1 GLU 55 F GLU 55 1_555 DA FE FE . F FE 203 5_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc47 F NE2 HIS 78 F HIS 78 1_555 BA ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc48 F OE1 GLU 82 F GLU 82 1_555 BA ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc49 F OD1 ASN 85 F ASN 85 1_555 DA FE FE . F FE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc50 F O GLU 100 F GLU 100 1_555 CA FE FE . F FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LKP _atom_sites.fract_transf_matrix[1][1] 0.010777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ZN A 1 201 6 ZN ZN . H 2 ZN A 1 202 14 ZN ZN . I 3 FE A 1 203 1 FE FE . J 3 FE A 1 204 14 FE FE . K 2 ZN A 1 205 12 ZN ZN . L 2 ZN B 1 201 15 ZN ZN . M 3 FE B 1 202 2 FE FE . N 3 FE B 1 203 15 FE FE . O 2 ZN B 1 204 5 ZN ZN . P 2 ZN B 1 205 16 ZN ZN . Q 3 FE C 1 201 3 FE FE . R 3 FE C 1 202 9 FE FE . S 2 ZN C 1 203 13 ZN ZN . T 2 ZN D 1 201 7 ZN ZN . U 2 ZN D 1 202 10 ZN ZN . V 3 FE D 1 203 4 FE FE . W 3 FE D 1 204 10 FE FE . X 2 ZN D 1 205 3 ZN ZN . Y 2 ZN E 1 201 4 ZN ZN . Z 3 FE E 1 202 5 FE FE . AA 3 FE E 1 203 11 FE FE . BA 2 ZN F 1 201 11 ZN ZN . CA 3 FE F 1 202 6 FE FE . DA 3 FE F 1 203 12 FE FE . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.276 _atom_site.Cartn_y 54.47 _atom_site.Cartn_z 115.975 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 136.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 204 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #