data_6LM0
#
_model_server_result.job_id            fwA8G73uPnNCelrWGnjLCA 
_model_server_result.datetime_utc      '2024-11-23 06:32:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lm0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    6LM0 
#
_exptl.entry_id    6LM0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6LM0 
_cell.length_a            64.49 
_cell.length_b            107.57 
_cell.length_c            224.5 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LM0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 K N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 211 A LYS 204 1_555 D C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale2 B NZ LYS 211 B LYS 204 1_555 K C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale3 C NZ LYS 211 C LYS 204 1_555 P C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 395 n n 
C1 C6 RET sing 396 n n 
C1 C16 RET sing 397 n n 
C1 C17 RET sing 398 n n 
C2 C3 RET sing 399 n n 
C2 H21 RET sing 400 n n 
C2 H22 RET sing 401 n n 
C3 C4 RET sing 402 n n 
C3 H31 RET sing 403 n n 
C3 H32 RET sing 404 n n 
C4 C5 RET sing 405 n n 
C4 H41 RET sing 406 n n 
C4 H42 RET sing 407 n n 
C5 C6 RET doub 408 n n 
C5 C18 RET sing 409 n n 
C6 C7 RET sing 410 n n 
C7 C8 RET doub 411 e n 
C7 H7 RET sing 412 n n 
C8 C9 RET sing 413 n n 
C8 H8 RET sing 414 n n 
C9 C10 RET doub 415 e n 
C9 C19 RET sing 416 n n 
C10 C11 RET sing 417 n n 
C10 H10 RET sing 418 n n 
C11 C12 RET doub 419 e n 
C11 H11 RET sing 420 n n 
C12 C13 RET sing 421 n n 
C12 H12 RET sing 422 n n 
C13 C14 RET doub 423 e n 
C13 C20 RET sing 424 n n 
C14 C15 RET sing 425 n n 
C14 H14 RET sing 426 n n 
C15 O1 RET doub 427 n n 
C15 H15 RET sing 428 n n 
C16 H161 RET sing 429 n n 
C16 H162 RET sing 430 n n 
C16 H163 RET sing 431 n n 
C17 H171 RET sing 432 n n 
C17 H172 RET sing 433 n n 
C17 H173 RET sing 434 n n 
C18 H181 RET sing 435 n n 
C18 H182 RET sing 436 n n 
C18 H183 RET sing 437 n n 
C19 H191 RET sing 438 n n 
C19 H192 RET sing 439 n n 
C19 H193 RET sing 440 n n 
C20 H201 RET sing 441 n n 
C20 H202 RET sing 442 n n 
C20 H203 RET sing 443 n n 
#
_atom_sites.entry_id                     6LM0 
_atom_sites.fract_transf_matrix[1][1]    0.015506 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009296 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004454 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 RET A 1 301 301 RET RET . 
E 3 HEX A 1 302 1 HEX HEX . 
F 3 HEX A 1 303 2 HEX HEX . 
G 4 OCT A 1 304 1 OCT OCT . 
H 4 OCT A 1 305 2 OCT OCT . 
I 4 OCT A 1 306 3 OCT OCT . 
J 5 C14 A 1 307 1 C14 C14 . 
K 2 RET B 1 301 301 RET RET . 
L 3 HEX B 1 302 3 HEX HEX . 
M 6 D10 B 1 303 1 D10 D10 . 
N 5 C14 B 1 304 2 C14 C14 . 
O 5 C14 B 1 305 3 C14 C14 . 
P 2 RET C 1 301 301 RET RET . 
Q 4 OCT C 1 302 4 OCT OCT . 
R 6 D10 C 1 303 2 D10 D10 . 
S 5 C14 C 1 304 4 C14 C14 . 
T 7 HOH A 1 401 515 HOH HOH . 
T 7 HOH A 2 402 406 HOH HOH . 
T 7 HOH A 3 403 401 HOH HOH . 
T 7 HOH A 4 404 402 HOH HOH . 
T 7 HOH A 5 405 421 HOH HOH . 
T 7 HOH A 6 406 407 HOH HOH . 
T 7 HOH A 7 407 501 HOH HOH . 
T 7 HOH A 8 408 526 HOH HOH . 
T 7 HOH A 9 409 514 HOH HOH . 
T 7 HOH A 10 410 502 HOH HOH . 
T 7 HOH A 11 411 405 HOH HOH . 
T 7 HOH A 12 412 422 HOH HOH . 
T 7 HOH A 13 413 525 HOH HOH . 
T 7 HOH A 14 414 404 HOH HOH . 
T 7 HOH A 15 415 522 HOH HOH . 
T 7 HOH A 16 416 521 HOH HOH . 
T 7 HOH A 17 417 511 HOH HOH . 
T 7 HOH A 18 418 527 HOH HOH . 
U 7 HOH B 1 401 407 HOH HOH . 
U 7 HOH B 2 402 405 HOH HOH . 
U 7 HOH B 3 403 515 HOH HOH . 
U 7 HOH B 4 404 402 HOH HOH . 
U 7 HOH B 5 405 517 HOH HOH . 
U 7 HOH B 6 406 404 HOH HOH . 
U 7 HOH B 7 407 401 HOH HOH . 
U 7 HOH B 8 408 502 HOH HOH . 
U 7 HOH B 9 409 421 HOH HOH . 
U 7 HOH B 10 410 406 HOH HOH . 
U 7 HOH B 11 411 516 HOH HOH . 
U 7 HOH B 12 412 501 HOH HOH . 
U 7 HOH B 13 413 518 HOH HOH . 
U 7 HOH B 14 414 511 HOH HOH . 
V 7 HOH C 1 401 402 HOH HOH . 
V 7 HOH C 2 402 414 HOH HOH . 
V 7 HOH C 3 403 505 HOH HOH . 
V 7 HOH C 4 404 416 HOH HOH . 
V 7 HOH C 5 405 417 HOH HOH . 
V 7 HOH C 6 406 406 HOH HOH . 
V 7 HOH C 7 407 404 HOH HOH . 
V 7 HOH C 8 408 510 HOH HOH . 
V 7 HOH C 9 409 522 HOH HOH . 
V 7 HOH C 10 410 502 HOH HOH . 
V 7 HOH C 11 411 407 HOH HOH . 
V 7 HOH C 12 412 405 HOH HOH . 
V 7 HOH C 13 413 413 HOH HOH . 
V 7 HOH C 14 414 421 HOH HOH . 
V 7 HOH C 15 415 501 HOH HOH . 
V 7 HOH C 16 416 523 HOH HOH . 
V 7 HOH C 17 417 411 HOH HOH . 
V 7 HOH C 18 418 422 HOH HOH . 
V 7 HOH C 19 419 511 HOH HOH . 
V 7 HOH C 20 420 418 HOH HOH . 
V 7 HOH C 21 421 401 HOH HOH . 
V 7 HOH C 22 422 523 HOH HOH . 
V 7 HOH C 23 423 521 HOH HOH . 
V 7 HOH C 24 424 413 HOH HOH . 
V 7 HOH C 25 425 524 HOH HOH . 
V 7 HOH C 26 426 515 HOH HOH . 
V 7 HOH C 27 427 411 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . D 2 13.323 51.17 101.951 1 29.79 ? C1 RET 301 A 1 
HETATM 2 C C2 RET . . . D 2 14.342 50.145 102.442 1 30.38 ? C2 RET 301 A 1 
HETATM 3 C C3 RET . . . D 2 15.178 50.402 103.691 1 31.09 ? C3 RET 301 A 1 
HETATM 4 C C4 RET . . . D 2 15.491 51.874 103.894 1 32.12 ? C4 RET 301 A 1 
HETATM 5 C C5 RET . . . D 2 14.431 52.843 103.437 1 32.26 ? C5 RET 301 A 1 
HETATM 6 C C6 RET . . . D 2 13.528 52.584 102.493 1 29.12 ? C6 RET 301 A 1 
HETATM 7 C C7 RET . . . D 2 12.638 53.733 102.152 1 27.1 ? C7 RET 301 A 1 
HETATM 8 C C8 RET . . . D 2 11.621 53.697 101.294 1 27.16 ? C8 RET 301 A 1 
HETATM 9 C C9 RET . . . D 2 10.755 54.846 100.981 1 27.12 ? C9 RET 301 A 1 
HETATM 10 C C10 RET . . . D 2 9.786 54.623 100.088 1 26.51 ? C10 RET 301 A 1 
HETATM 11 C C11 RET . . . D 2 8.818 55.617 99.645 1 27.48 ? C11 RET 301 A 1 
HETATM 12 C C12 RET . . . D 2 7.944 55.187 98.743 1 28.48 ? C12 RET 301 A 1 
HETATM 13 C C13 RET . . . D 2 6.886 56.041 98.181 1 30.8 ? C13 RET 301 A 1 
HETATM 14 C C14 RET . . . D 2 6.059 55.514 97.267 1 30.05 ? C14 RET 301 A 1 
HETATM 15 C C15 RET . . . D 2 4.995 56.319 96.685 1 28.51 ? C15 RET 301 A 1 
HETATM 16 C C16 RET . . . D 2 13.243 51.048 100.43 1 29.33 ? C16 RET 301 A 1 
HETATM 17 C C17 RET . . . D 2 12.017 50.74 102.616 1 27.77 ? C17 RET 301 A 1 
HETATM 18 C C18 RET . . . D 2 14.468 54.215 104.045 1 29.89 ? C18 RET 301 A 1 
HETATM 19 C C19 RET . . . D 2 10.947 56.185 101.633 1 25.03 ? C19 RET 301 A 1 
HETATM 20 C C20 RET . . . D 2 6.73 57.464 98.626 1 27.26 ? C20 RET 301 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#