data_6LM0 # _model_server_result.job_id dBxWKWHebJjZHRZnZ-XA0g _model_server_result.datetime_utc '2024-12-04 12:47:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lm0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 6LM0 # _exptl.entry_id 6LM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LM0 _cell.length_a 64.49 _cell.length_b 107.57 _cell.length_c 224.5 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 K N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 211 A LYS 204 1_555 D C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale2 B NZ LYS 211 B LYS 204 1_555 K C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale3 C NZ LYS 211 C LYS 204 1_555 P C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 395 n n C1 C6 RET sing 396 n n C1 C16 RET sing 397 n n C1 C17 RET sing 398 n n C2 C3 RET sing 399 n n C2 H21 RET sing 400 n n C2 H22 RET sing 401 n n C3 C4 RET sing 402 n n C3 H31 RET sing 403 n n C3 H32 RET sing 404 n n C4 C5 RET sing 405 n n C4 H41 RET sing 406 n n C4 H42 RET sing 407 n n C5 C6 RET doub 408 n n C5 C18 RET sing 409 n n C6 C7 RET sing 410 n n C7 C8 RET doub 411 e n C7 H7 RET sing 412 n n C8 C9 RET sing 413 n n C8 H8 RET sing 414 n n C9 C10 RET doub 415 e n C9 C19 RET sing 416 n n C10 C11 RET sing 417 n n C10 H10 RET sing 418 n n C11 C12 RET doub 419 e n C11 H11 RET sing 420 n n C12 C13 RET sing 421 n n C12 H12 RET sing 422 n n C13 C14 RET doub 423 e n C13 C20 RET sing 424 n n C14 C15 RET sing 425 n n C14 H14 RET sing 426 n n C15 O1 RET doub 427 n n C15 H15 RET sing 428 n n C16 H161 RET sing 429 n n C16 H162 RET sing 430 n n C16 H163 RET sing 431 n n C17 H171 RET sing 432 n n C17 H172 RET sing 433 n n C17 H173 RET sing 434 n n C18 H181 RET sing 435 n n C18 H182 RET sing 436 n n C18 H183 RET sing 437 n n C19 H191 RET sing 438 n n C19 H192 RET sing 439 n n C19 H193 RET sing 440 n n C20 H201 RET sing 441 n n C20 H202 RET sing 442 n n C20 H203 RET sing 443 n n # _atom_sites.entry_id 6LM0 _atom_sites.fract_transf_matrix[1][1] 0.015506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RET A 1 301 301 RET RET . E 3 HEX A 1 302 1 HEX HEX . F 3 HEX A 1 303 2 HEX HEX . G 4 OCT A 1 304 1 OCT OCT . H 4 OCT A 1 305 2 OCT OCT . I 4 OCT A 1 306 3 OCT OCT . J 5 C14 A 1 307 1 C14 C14 . K 2 RET B 1 301 301 RET RET . L 3 HEX B 1 302 3 HEX HEX . M 6 D10 B 1 303 1 D10 D10 . N 5 C14 B 1 304 2 C14 C14 . O 5 C14 B 1 305 3 C14 C14 . P 2 RET C 1 301 301 RET RET . Q 4 OCT C 1 302 4 OCT OCT . R 6 D10 C 1 303 2 D10 D10 . S 5 C14 C 1 304 4 C14 C14 . T 7 HOH A 1 401 515 HOH HOH . T 7 HOH A 2 402 406 HOH HOH . T 7 HOH A 3 403 401 HOH HOH . T 7 HOH A 4 404 402 HOH HOH . T 7 HOH A 5 405 421 HOH HOH . T 7 HOH A 6 406 407 HOH HOH . T 7 HOH A 7 407 501 HOH HOH . T 7 HOH A 8 408 526 HOH HOH . T 7 HOH A 9 409 514 HOH HOH . T 7 HOH A 10 410 502 HOH HOH . T 7 HOH A 11 411 405 HOH HOH . T 7 HOH A 12 412 422 HOH HOH . T 7 HOH A 13 413 525 HOH HOH . T 7 HOH A 14 414 404 HOH HOH . T 7 HOH A 15 415 522 HOH HOH . T 7 HOH A 16 416 521 HOH HOH . T 7 HOH A 17 417 511 HOH HOH . T 7 HOH A 18 418 527 HOH HOH . U 7 HOH B 1 401 407 HOH HOH . U 7 HOH B 2 402 405 HOH HOH . U 7 HOH B 3 403 515 HOH HOH . U 7 HOH B 4 404 402 HOH HOH . U 7 HOH B 5 405 517 HOH HOH . U 7 HOH B 6 406 404 HOH HOH . U 7 HOH B 7 407 401 HOH HOH . U 7 HOH B 8 408 502 HOH HOH . U 7 HOH B 9 409 421 HOH HOH . U 7 HOH B 10 410 406 HOH HOH . U 7 HOH B 11 411 516 HOH HOH . U 7 HOH B 12 412 501 HOH HOH . U 7 HOH B 13 413 518 HOH HOH . U 7 HOH B 14 414 511 HOH HOH . V 7 HOH C 1 401 402 HOH HOH . V 7 HOH C 2 402 414 HOH HOH . V 7 HOH C 3 403 505 HOH HOH . V 7 HOH C 4 404 416 HOH HOH . V 7 HOH C 5 405 417 HOH HOH . V 7 HOH C 6 406 406 HOH HOH . V 7 HOH C 7 407 404 HOH HOH . V 7 HOH C 8 408 510 HOH HOH . V 7 HOH C 9 409 522 HOH HOH . V 7 HOH C 10 410 502 HOH HOH . V 7 HOH C 11 411 407 HOH HOH . V 7 HOH C 12 412 405 HOH HOH . V 7 HOH C 13 413 413 HOH HOH . V 7 HOH C 14 414 421 HOH HOH . V 7 HOH C 15 415 501 HOH HOH . V 7 HOH C 16 416 523 HOH HOH . V 7 HOH C 17 417 411 HOH HOH . V 7 HOH C 18 418 422 HOH HOH . V 7 HOH C 19 419 511 HOH HOH . V 7 HOH C 20 420 418 HOH HOH . V 7 HOH C 21 421 401 HOH HOH . V 7 HOH C 22 422 523 HOH HOH . V 7 HOH C 23 423 521 HOH HOH . V 7 HOH C 24 424 413 HOH HOH . V 7 HOH C 25 425 524 HOH HOH . V 7 HOH C 26 426 515 HOH HOH . V 7 HOH C 27 427 411 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . K 2 35.866 48.968 78.14 1 39.76 ? C1 RET 301 B 1 HETATM 2 C C2 RET . . . K 2 35.709 47.796 77.177 1 35.91 ? C2 RET 301 B 1 HETATM 3 C C3 RET . . . K 2 36.312 47.843 75.777 1 36.31 ? C3 RET 301 B 1 HETATM 4 C C4 RET . . . K 2 36.334 49.25 75.204 1 34.99 ? C4 RET 301 B 1 HETATM 5 C C5 RET . . . K 2 36.541 50.366 76.193 1 37.08 ? C5 RET 301 B 1 HETATM 6 C C6 RET . . . K 2 36.241 50.296 77.488 1 37.68 ? C6 RET 301 B 1 HETATM 7 C C7 RET . . . K 2 36.459 51.56 78.254 1 36.08 ? C7 RET 301 B 1 HETATM 8 C C8 RET . . . K 2 36.283 51.702 79.568 1 36.75 ? C8 RET 301 B 1 HETATM 9 C C9 RET . . . K 2 36.518 52.942 80.326 1 36.97 ? C9 RET 301 B 1 HETATM 10 C C10 RET . . . K 2 36.262 52.88 81.638 1 37.78 ? C10 RET 301 B 1 HETATM 11 C C11 RET . . . K 2 36.438 53.98 82.578 1 39.44 ? C11 RET 301 B 1 HETATM 12 C C12 RET . . . K 2 36.111 53.711 83.839 1 36.24 ? C12 RET 301 B 1 HETATM 13 C C13 RET . . . K 2 36.231 54.691 84.932 1 34.93 ? C13 RET 301 B 1 HETATM 14 C C14 RET . . . K 2 35.866 54.326 86.167 1 33.38 ? C14 RET 301 B 1 HETATM 15 C C15 RET . . . K 2 35.979 55.268 87.273 1 40.31 ? C15 RET 301 B 1 HETATM 16 C C16 RET . . . K 2 34.627 48.995 79.033 1 35.97 ? C16 RET 301 B 1 HETATM 17 C C17 RET . . . K 2 37.127 48.618 78.928 1 39.07 ? C17 RET 301 B 1 HETATM 18 C C18 RET . . . K 2 37.035 51.669 75.641 1 38.12 ? C18 RET 301 B 1 HETATM 19 C C19 RET . . . K 2 37.032 54.19 79.669 1 35.57 ? C19 RET 301 B 1 HETATM 20 C C20 RET . . . K 2 36.768 56.066 84.677 1 33.23 ? C20 RET 301 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #