data_6LM0 # _model_server_result.job_id v5oXwwMLKhxd9SkrxU7ozQ _model_server_result.datetime_utc '2024-12-01 21:27:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lm0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 6LM0 # _exptl.entry_id 6LM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.229 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LM0 _cell.length_a 64.49 _cell.length_b 107.57 _cell.length_c 224.5 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 211 A LYS 204 1_555 D C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale2 B NZ LYS 211 B LYS 204 1_555 K C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale3 C NZ LYS 211 C LYS 204 1_555 P C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 330 n n C1 H11 OCT sing 331 n n C1 H12 OCT sing 332 n n C1 H13 OCT sing 333 n n C2 C3 OCT sing 334 n n C2 H21 OCT sing 335 n n C2 H22 OCT sing 336 n n C3 C4 OCT sing 337 n n C3 H31 OCT sing 338 n n C3 H32 OCT sing 339 n n C4 C5 OCT sing 340 n n C4 H41 OCT sing 341 n n C4 H42 OCT sing 342 n n C5 C6 OCT sing 343 n n C5 H51 OCT sing 344 n n C5 H52 OCT sing 345 n n C6 C7 OCT sing 346 n n C6 H61 OCT sing 347 n n C6 H62 OCT sing 348 n n C7 C8 OCT sing 349 n n C7 H71 OCT sing 350 n n C7 H72 OCT sing 351 n n C8 H81 OCT sing 352 n n C8 H82 OCT sing 353 n n C8 H83 OCT sing 354 n n # _atom_sites.entry_id 6LM0 _atom_sites.fract_transf_matrix[1][1] 0.015506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RET A 1 301 301 RET RET . E 3 HEX A 1 302 1 HEX HEX . F 3 HEX A 1 303 2 HEX HEX . G 4 OCT A 1 304 1 OCT OCT . H 4 OCT A 1 305 2 OCT OCT . I 4 OCT A 1 306 3 OCT OCT . J 5 C14 A 1 307 1 C14 C14 . K 2 RET B 1 301 301 RET RET . L 3 HEX B 1 302 3 HEX HEX . M 6 D10 B 1 303 1 D10 D10 . N 5 C14 B 1 304 2 C14 C14 . O 5 C14 B 1 305 3 C14 C14 . P 2 RET C 1 301 301 RET RET . Q 4 OCT C 1 302 4 OCT OCT . R 6 D10 C 1 303 2 D10 D10 . S 5 C14 C 1 304 4 C14 C14 . T 7 HOH A 1 401 515 HOH HOH . T 7 HOH A 2 402 406 HOH HOH . T 7 HOH A 3 403 401 HOH HOH . T 7 HOH A 4 404 402 HOH HOH . T 7 HOH A 5 405 421 HOH HOH . T 7 HOH A 6 406 407 HOH HOH . T 7 HOH A 7 407 501 HOH HOH . T 7 HOH A 8 408 526 HOH HOH . T 7 HOH A 9 409 514 HOH HOH . T 7 HOH A 10 410 502 HOH HOH . T 7 HOH A 11 411 405 HOH HOH . T 7 HOH A 12 412 422 HOH HOH . T 7 HOH A 13 413 525 HOH HOH . T 7 HOH A 14 414 404 HOH HOH . T 7 HOH A 15 415 522 HOH HOH . T 7 HOH A 16 416 521 HOH HOH . T 7 HOH A 17 417 511 HOH HOH . T 7 HOH A 18 418 527 HOH HOH . U 7 HOH B 1 401 407 HOH HOH . U 7 HOH B 2 402 405 HOH HOH . U 7 HOH B 3 403 515 HOH HOH . U 7 HOH B 4 404 402 HOH HOH . U 7 HOH B 5 405 517 HOH HOH . U 7 HOH B 6 406 404 HOH HOH . U 7 HOH B 7 407 401 HOH HOH . U 7 HOH B 8 408 502 HOH HOH . U 7 HOH B 9 409 421 HOH HOH . U 7 HOH B 10 410 406 HOH HOH . U 7 HOH B 11 411 516 HOH HOH . U 7 HOH B 12 412 501 HOH HOH . U 7 HOH B 13 413 518 HOH HOH . U 7 HOH B 14 414 511 HOH HOH . V 7 HOH C 1 401 402 HOH HOH . V 7 HOH C 2 402 414 HOH HOH . V 7 HOH C 3 403 505 HOH HOH . V 7 HOH C 4 404 416 HOH HOH . V 7 HOH C 5 405 417 HOH HOH . V 7 HOH C 6 406 406 HOH HOH . V 7 HOH C 7 407 404 HOH HOH . V 7 HOH C 8 408 510 HOH HOH . V 7 HOH C 9 409 522 HOH HOH . V 7 HOH C 10 410 502 HOH HOH . V 7 HOH C 11 411 407 HOH HOH . V 7 HOH C 12 412 405 HOH HOH . V 7 HOH C 13 413 413 HOH HOH . V 7 HOH C 14 414 421 HOH HOH . V 7 HOH C 15 415 501 HOH HOH . V 7 HOH C 16 416 523 HOH HOH . V 7 HOH C 17 417 411 HOH HOH . V 7 HOH C 18 418 422 HOH HOH . V 7 HOH C 19 419 511 HOH HOH . V 7 HOH C 20 420 418 HOH HOH . V 7 HOH C 21 421 401 HOH HOH . V 7 HOH C 22 422 523 HOH HOH . V 7 HOH C 23 423 521 HOH HOH . V 7 HOH C 24 424 413 HOH HOH . V 7 HOH C 25 425 524 HOH HOH . V 7 HOH C 26 426 515 HOH HOH . V 7 HOH C 27 427 411 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . G 4 -1.603 51.42 83.418 1 32.44 ? C1 OCT 304 A 1 HETATM 2 C C2 OCT . . . G 4 -2.719 51.27 84.448 1 32.45 ? C2 OCT 304 A 1 HETATM 3 C C3 OCT . . . G 4 -3.96 52.023 83.973 1 32.48 ? C3 OCT 304 A 1 HETATM 4 C C4 OCT . . . G 4 -3.632 53.505 83.81 1 33.07 ? C4 OCT 304 A 1 HETATM 5 C C5 OCT . . . G 4 -4.906 54.329 83.985 1 36.75 ? C5 OCT 304 A 1 HETATM 6 C C6 OCT . . . G 4 -4.742 55.681 83.294 1 39.2 ? C6 OCT 304 A 1 HETATM 7 C C7 OCT . . . G 4 -5.94 56.572 83.615 1 40.92 ? C7 OCT 304 A 1 HETATM 8 C C8 OCT . . . G 4 -5.806 57.897 82.868 1 37.81 ? C8 OCT 304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #