data_6LMQ # _model_server_result.job_id V9MfYJEgTkKvNucNXpS9Zw _model_server_result.datetime_utc '2025-04-06 00:45:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lmq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6LMQ # _exptl.entry_id 6LMQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6LMQ _cell.length_a 71.885 _cell.length_b 71.885 _cell.length_c 65.52 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -43.68 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 18 A ASP 64 1_555 A N CAF 19 A CAF 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CAF 19 A CAF 65 1_555 A N THR 20 A THR 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 A C ALA 83 A ALA 129 1_555 A N CAF 84 A CAF 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale4 A C CAF 84 A CAF 130 1_555 A N TRP 85 A TRP 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 340 n n C1 C2 PGE sing 341 n n C1 H1 PGE sing 342 n n C1 H12 PGE sing 343 n n O1 HO1 PGE sing 344 n n C2 O2 PGE sing 345 n n C2 H2 PGE sing 346 n n C2 H22 PGE sing 347 n n O2 C3 PGE sing 348 n n C3 C4 PGE sing 349 n n C3 H3 PGE sing 350 n n C3 H32 PGE sing 351 n n C4 O3 PGE sing 352 n n C4 H4 PGE sing 353 n n C4 H42 PGE sing 354 n n O4 C6 PGE sing 355 n n O4 HO4 PGE sing 356 n n C6 C5 PGE sing 357 n n C6 H6 PGE sing 358 n n C6 H62 PGE sing 359 n n C5 O3 PGE sing 360 n n C5 H5 PGE sing 361 n n C5 H52 PGE sing 362 n n # _atom_sites.entry_id 6LMQ _atom_sites.fract_transf_matrix[1][1] 0.013911 _atom_sites.fract_transf_matrix[1][2] 0.008032 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 2 SO4 A 1 302 2 SO4 SO4 . D 3 PGE A 1 303 1 PGE PGE . E 4 940 A 1 304 1 940 940 . F 5 HOH A 1 401 21 HOH HOH . F 5 HOH A 2 402 20 HOH HOH . F 5 HOH A 3 403 8 HOH HOH . F 5 HOH A 4 404 10 HOH HOH . F 5 HOH A 5 405 5 HOH HOH . F 5 HOH A 6 406 23 HOH HOH . F 5 HOH A 7 407 7 HOH HOH . F 5 HOH A 8 408 16 HOH HOH . F 5 HOH A 9 409 27 HOH HOH . F 5 HOH A 10 410 34 HOH HOH . F 5 HOH A 11 411 24 HOH HOH . F 5 HOH A 12 412 11 HOH HOH . F 5 HOH A 13 413 4 HOH HOH . F 5 HOH A 14 414 1 HOH HOH . F 5 HOH A 15 415 9 HOH HOH . F 5 HOH A 16 416 2 HOH HOH . F 5 HOH A 17 417 6 HOH HOH . F 5 HOH A 18 418 39 HOH HOH . F 5 HOH A 19 419 17 HOH HOH . F 5 HOH A 20 420 41 HOH HOH . F 5 HOH A 21 421 32 HOH HOH . F 5 HOH A 22 422 3 HOH HOH . F 5 HOH A 23 423 15 HOH HOH . F 5 HOH A 24 424 37 HOH HOH . F 5 HOH A 25 425 36 HOH HOH . F 5 HOH A 26 426 38 HOH HOH . F 5 HOH A 27 427 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 3 19.441 -43.115 -19.941 1 40.61 ? C1 PGE 303 A 1 HETATM 2 O O1 PGE . . . D 3 19.814 -41.766 -20.079 1 48.32 ? O1 PGE 303 A 1 HETATM 3 C C2 PGE . . . D 3 18.076 -43.423 -20.548 1 41.84 ? C2 PGE 303 A 1 HETATM 4 O O2 PGE . . . D 3 17.677 -44.559 -19.782 1 43.8 ? O2 PGE 303 A 1 HETATM 5 C C3 PGE . . . D 3 17.273 -45.706 -20.488 1 43.9 ? C3 PGE 303 A 1 HETATM 6 C C4 PGE . . . D 3 18.177 -46.881 -20.18 1 48.63 ? C4 PGE 303 A 1 HETATM 7 O O4 PGE . . . D 3 20.763 -47.572 -16.369 1 52.52 ? O4 PGE 303 A 1 HETATM 8 C C6 PGE . . . D 3 19.448 -47.855 -16.877 1 53.43 ? C6 PGE 303 A 1 HETATM 9 C C5 PGE . . . D 3 19.439 -47.752 -18.402 1 51.14 ? C5 PGE 303 A 1 HETATM 10 O O3 PGE . . . D 3 18.305 -47.005 -18.779 1 47.95 ? O3 PGE 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #