data_6LN2 # _model_server_result.job_id qgNBsPso1QGI6rQaIibc0Q _model_server_result.datetime_utc '2024-11-04 22:47:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ln2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 6LN2 # _exptl.entry_id 6LN2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 515.527 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(R)-(3,3-dimethylcyclobutyl)({6-[4-(trifluoromethyl)-1H-imidazol-1-yl]pyridin-3-yl}amino)methyl]benzene-1-carbonyl}-beta-alanine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LN2 _cell.length_a 63.04 _cell.length_b 64.66 _cell.length_c 322.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LN2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 46 1_555 A SG CYS 48 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 39 A CYS 62 1_555 A SG CYS 81 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 62 A CYS 85 1_555 A SG CYS 103 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 A SG CYS 203 A CYS 226 1_555 A SG CYS 326 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 347 A CYS 317 1_555 A SG CYS 391 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf6 B SG CYS 23 B CYS 23 1_555 B SG CYS 87 B CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf7 B SG CYS 133 B CYS 133 1_555 B SG CYS 193 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 B SG CYS 213 B CYS 213 1_555 C SG CYS 139 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf9 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf10 C SG CYS 152 C CYS 152 1_555 C SG CYS 208 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 A ND2 ASN 59 A ASN 82 1_555 D C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 E ZN ZN . A ZN 502 1_555 A SG CYS 243 A CYS 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc2 E ZN ZN . A ZN 502 1_555 A SG CYS 246 A CYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 E ZN ZN . A ZN 502 1_555 A SG CYS 276 A CYS 1039 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc4 E ZN ZN . A ZN 502 1_555 A SG CYS 279 A CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? # _chem_comp.formula 'C26 H28 F3 N5 O3' _chem_comp.formula_weight 515.527 _chem_comp.id 97Y _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(R)-(3,3-dimethylcyclobutyl)({6-[4-(trifluoromethyl)-1H-imidazol-1-yl]pyridin-3-yl}amino)methyl]benzene-1-carbonyl}-beta-alanine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F01 C21 97Y sing 1 n n N09 C23 97Y doub 2 n y N09 C18 97Y sing 3 n y O06 C37 97Y doub 4 n n C21 C18 97Y sing 5 n n C21 F02 97Y sing 6 n n C21 F03 97Y sing 7 n n C23 N07 97Y sing 8 n y C36 C37 97Y sing 9 n n C36 C35 97Y sing 10 n n C18 C22 97Y doub 11 n y C37 O05 97Y sing 12 n n O04 C34 97Y doub 13 n n C35 N11 97Y sing 14 n n N07 C22 97Y sing 15 n y N07 C19 97Y sing 16 n n C34 N11 97Y sing 17 n n C34 C31 97Y sing 18 n n C24 C19 97Y doub 19 n y C24 C28 97Y sing 20 n y C19 N10 97Y sing 21 n y C32 C31 97Y doub 22 n y C32 C25 97Y sing 23 n y C31 C33 97Y sing 24 n y C28 C20 97Y doub 25 n y C25 C17 97Y doub 26 n y N10 C27 97Y doub 27 n y C33 C26 97Y doub 28 n y C20 C27 97Y sing 29 n y C20 N08 97Y sing 30 n n C17 C26 97Y sing 31 n y C17 C13 97Y sing 32 n n C13 N08 97Y sing 33 n n C13 C12 97Y sing 34 n n C12 C16 97Y sing 35 n n C12 C15 97Y sing 36 n n C16 C14 97Y sing 37 n n C15 C14 97Y sing 38 n n C14 C30 97Y sing 39 n n C14 C29 97Y sing 40 n n C13 H1 97Y sing 41 n n C15 H2 97Y sing 42 n n C15 H3 97Y sing 43 n n C22 H4 97Y sing 44 n n C24 H5 97Y sing 45 n n C26 H6 97Y sing 46 n n C28 H7 97Y sing 47 n n O05 H8 97Y sing 48 n n N08 H9 97Y sing 49 n n N11 H10 97Y sing 50 n n C12 H11 97Y sing 51 n n C16 H12 97Y sing 52 n n C16 H13 97Y sing 53 n n C23 H14 97Y sing 54 n n C25 H15 97Y sing 55 n n C27 H16 97Y sing 56 n n C29 H17 97Y sing 57 n n C29 H18 97Y sing 58 n n C29 H19 97Y sing 59 n n C30 H20 97Y sing 60 n n C30 H21 97Y sing 61 n n C30 H22 97Y sing 62 n n C32 H23 97Y sing 63 n n C33 H24 97Y sing 64 n n C35 H25 97Y sing 65 n n C35 H26 97Y sing 66 n n C36 H27 97Y sing 67 n n C36 H28 97Y sing 68 n n # _atom_sites.entry_id 6LN2 _atom_sites.fract_transf_matrix[1][1] 0.015863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015466 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 501 502 NAG NAG . E 5 ZN A 1 502 1001 ZN ZN . F 6 97Y A 1 503 1201 97Y LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 97Y . . . F 6 20.379 18.351 92.345 1 155.54 ? C13 97Y 503 A 1 HETATM 2 C C15 97Y . . . F 6 19.722 18.638 89.896 1 153.45 ? C15 97Y 503 A 1 HETATM 3 C C17 97Y . . . F 6 19.754 19.587 93.044 1 161.74 ? C17 97Y 503 A 1 HETATM 4 C C20 97Y . . . F 6 22.871 18.493 92.873 1 144.14 ? C20 97Y 503 A 1 HETATM 5 C C21 97Y . . . F 6 29.521 18.647 96.742 1 138.73 ? C21 97Y 503 A 1 HETATM 6 C C22 97Y . . . F 6 27.343 18.582 95.343 1 129.38 ? C22 97Y 503 A 1 HETATM 7 C C24 97Y . . . F 6 23.739 17.885 95.037 1 135.6 ? C24 97Y 503 A 1 HETATM 8 C C26 97Y . . . F 6 19.881 20.855 92.476 1 164.94 ? C26 97Y 503 A 1 HETATM 9 C C28 97Y . . . F 6 22.658 17.969 94.16 1 139.81 ? C28 97Y 503 A 1 HETATM 10 F F01 97Y . . . F 6 30.269 17.58 96.36 1 141.16 ? F01 97Y 503 A 1 HETATM 11 F F02 97Y . . . F 6 29.869 19.741 95.996 1 144.36 ? F02 97Y 503 A 1 HETATM 12 F F03 97Y . . . F 6 29.738 18.87 98.07 1 138.66 ? F03 97Y 503 A 1 HETATM 13 O O04 97Y . . . F 6 17.303 22.907 95.943 1 175.27 ? O04 97Y 503 A 1 HETATM 14 O O05 97Y . . . F 6 18.162 28.481 96.706 1 186.21 ? O05 97Y 503 A 1 HETATM 15 O O06 97Y . . . F 6 17.261 26.642 97.5 1 186.72 -1 O06 97Y 503 A 1 HETATM 16 N N07 97Y . . . F 6 26.103 18.205 95.568 1 129.79 ? N07 97Y 503 A 1 HETATM 17 N N08 97Y . . . F 6 21.773 18.598 91.919 1 148.99 ? N08 97Y 503 A 1 HETATM 18 N N09 97Y . . . F 6 27.217 17.851 97.398 1 126.79 ? N09 97Y 503 A 1 HETATM 19 N N10 97Y . . . F 6 25.172 18.808 93.394 1 138.62 ? N10 97Y 503 A 1 HETATM 20 N N11 97Y . . . F 6 17.987 24.336 94.244 1 178.79 ? N11 97Y 503 A 1 HETATM 21 C C12 97Y . . . F 6 19.47 17.99 91.231 1 155.36 ? C12 97Y 503 A 1 HETATM 22 C C14 97Y . . . F 6 19.326 17.334 89.248 1 150.78 ? C14 97Y 503 A 1 HETATM 23 C C16 97Y . . . F 6 19.684 16.659 90.547 1 153.44 ? C16 97Y 503 A 1 HETATM 24 C C18 97Y . . . F 6 28.049 18.355 96.516 1 130.55 ? C18 97Y 503 A 1 HETATM 25 C C19 97Y . . . F 6 25.001 18.299 94.622 1 133.92 ? C19 97Y 503 A 1 HETATM 26 C C23 97Y . . . F 6 26.037 17.756 96.813 1 128.19 ? C23 97Y 503 A 1 HETATM 27 C C25 97Y . . . F 6 19 19.428 94.207 1 164.97 ? C25 97Y 503 A 1 HETATM 28 C C27 97Y . . . F 6 24.161 18.913 92.519 1 142.44 ? C27 97Y 503 A 1 HETATM 29 C C29 97Y . . . F 6 17.832 17.328 88.859 1 148.27 ? C29 97Y 503 A 1 HETATM 30 C C30 97Y . . . F 6 20.294 16.903 88.154 1 149.65 ? C30 97Y 503 A 1 HETATM 31 C C31 97Y . . . F 6 18.556 21.809 94.263 1 170.7 ? C31 97Y 503 A 1 HETATM 32 C C32 97Y . . . F 6 18.413 20.537 94.824 1 168.12 ? C32 97Y 503 A 1 HETATM 33 C C33 97Y . . . F 6 19.288 21.96 93.082 1 168.16 ? C33 97Y 503 A 1 HETATM 34 C C34 97Y . . . F 6 17.898 23.035 94.914 1 175.06 ? C34 97Y 503 A 1 HETATM 35 C C35 97Y . . . F 6 17.373 25.531 94.811 1 182.02 ? C35 97Y 503 A 1 HETATM 36 C C36 97Y . . . F 6 18.415 26.503 95.359 1 184.09 ? C36 97Y 503 A 1 HETATM 37 C C37 97Y . . . F 6 17.915 27.248 96.596 1 185.93 ? C37 97Y 503 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 37 #