data_6LNQ # _model_server_result.job_id SgC4LAyF65eH5noZIFtKpQ _model_server_result.datetime_utc '2024-11-21 11:24:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lnq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6LNQ # _exptl.entry_id 6LNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 511.613 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene-1-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-1H-indole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.36 _cell.angle_gamma 90 _cell.entry_id 6LNQ _cell.length_a 109.068 _cell.length_b 80.529 _cell.length_c 53.354 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C29 _struct_conn.ptnr2_label_comp_id EJF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id EJF _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.768 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H37 N5 O5' _chem_comp.formula_weight 511.613 _chem_comp.id EJF _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene-1-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-1H-indole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C33 EJF sing 83 n n C34 N35 EJF sing 84 n n C33 C32 EJF sing 85 n n N35 C36 EJF sing 86 n n C21 C19 EJF sing 87 n n C36 C32 EJF sing 88 n n C36 O37 EJF doub 89 n n C32 C31 EJF sing 90 n n O30 C29 EJF doub 91 n n C31 C28 EJF sing 92 n n C20 C19 EJF sing 93 n n C28 C29 EJF sing 94 n n C28 N27 EJF sing 95 n n C19 C06 EJF sing 96 n n O01 C02 EJF doub 97 n n C06 C05 EJF sing 98 n n C06 N07 EJF sing 99 n n C02 N27 EJF sing 100 n n C02 C03 EJF sing 101 n n C05 O22 EJF doub 102 n n C05 N04 EJF sing 103 n n N04 C03 EJF sing 104 n n C03 C23 EJF sing 105 n n C10 C11 EJF sing 106 n y C10 C09 EJF doub 107 n y C12 C11 EJF doub 108 n y C12 C13 EJF sing 109 n y N07 C08 EJF sing 110 n n C23 C24 EJF sing 111 n n C11 C16 EJF sing 112 n y C13 C14 EJF doub 113 n y C09 C08 EJF sing 114 n n C09 N17 EJF sing 115 n y C08 O18 EJF doub 116 n n C16 N17 EJF sing 117 n y C16 C15 EJF doub 118 n y C24 C25 EJF sing 119 n n C24 C26 EJF sing 120 n n C14 C15 EJF sing 121 n y C10 H1 EJF sing 122 n n C13 H2 EJF sing 123 n n C15 H3 EJF sing 124 n n C20 H4 EJF sing 125 n n C20 H5 EJF sing 126 n n C20 H6 EJF sing 127 n n C21 H7 EJF sing 128 n n C21 H8 EJF sing 129 n n C21 H9 EJF sing 130 n n C24 H10 EJF sing 131 n n C26 H11 EJF sing 132 n n C26 H12 EJF sing 133 n n C26 H13 EJF sing 134 n n C28 H14 EJF sing 135 n n C03 H15 EJF sing 136 n n C06 H16 EJF sing 137 n n C12 H17 EJF sing 138 n n C14 H18 EJF sing 139 n n C19 H19 EJF sing 140 n n C23 H20 EJF sing 141 n n C23 H21 EJF sing 142 n n C25 H22 EJF sing 143 n n C25 H23 EJF sing 144 n n C25 H24 EJF sing 145 n n C29 H25 EJF sing 146 n n C31 H26 EJF sing 147 n n C31 H27 EJF sing 148 n n C32 H28 EJF sing 149 n n C33 H29 EJF sing 150 n n C33 H30 EJF sing 151 n n C34 H31 EJF sing 152 n n C34 H32 EJF sing 153 n n N04 H33 EJF sing 154 n n N07 H34 EJF sing 155 n n N17 H35 EJF sing 156 n n N27 H36 EJF sing 157 n n N35 H37 EJF sing 158 n n # _atom_sites.entry_id 6LNQ _atom_sites.fract_transf_matrix[1][1] 0.009169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002348 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EJF A 1 401 1 EJF LIG . C 3 HOH A 1 501 75 HOH HOH . C 3 HOH A 2 502 16 HOH HOH . C 3 HOH A 3 503 2 HOH HOH . C 3 HOH A 4 504 32 HOH HOH . C 3 HOH A 5 505 21 HOH HOH . C 3 HOH A 6 506 85 HOH HOH . C 3 HOH A 7 507 9 HOH HOH . C 3 HOH A 8 508 41 HOH HOH . C 3 HOH A 9 509 4 HOH HOH . C 3 HOH A 10 510 15 HOH HOH . C 3 HOH A 11 511 3 HOH HOH . C 3 HOH A 12 512 19 HOH HOH . C 3 HOH A 13 513 49 HOH HOH . C 3 HOH A 14 514 88 HOH HOH . C 3 HOH A 15 515 44 HOH HOH . C 3 HOH A 16 516 62 HOH HOH . C 3 HOH A 17 517 36 HOH HOH . C 3 HOH A 18 518 52 HOH HOH . C 3 HOH A 19 519 30 HOH HOH . C 3 HOH A 20 520 8 HOH HOH . C 3 HOH A 21 521 48 HOH HOH . C 3 HOH A 22 522 29 HOH HOH . C 3 HOH A 23 523 13 HOH HOH . C 3 HOH A 24 524 56 HOH HOH . C 3 HOH A 25 525 89 HOH HOH . C 3 HOH A 26 526 91 HOH HOH . C 3 HOH A 27 527 67 HOH HOH . C 3 HOH A 28 528 20 HOH HOH . C 3 HOH A 29 529 94 HOH HOH . C 3 HOH A 30 530 68 HOH HOH . C 3 HOH A 31 531 51 HOH HOH . C 3 HOH A 32 532 79 HOH HOH . C 3 HOH A 33 533 34 HOH HOH . C 3 HOH A 34 534 7 HOH HOH . C 3 HOH A 35 535 28 HOH HOH . C 3 HOH A 36 536 87 HOH HOH . C 3 HOH A 37 537 17 HOH HOH . C 3 HOH A 38 538 31 HOH HOH . C 3 HOH A 39 539 93 HOH HOH . C 3 HOH A 40 540 14 HOH HOH . C 3 HOH A 41 541 92 HOH HOH . C 3 HOH A 42 542 84 HOH HOH . C 3 HOH A 43 543 80 HOH HOH . C 3 HOH A 44 544 43 HOH HOH . C 3 HOH A 45 545 18 HOH HOH . C 3 HOH A 46 546 82 HOH HOH . C 3 HOH A 47 547 25 HOH HOH . C 3 HOH A 48 548 33 HOH HOH . C 3 HOH A 49 549 46 HOH HOH . C 3 HOH A 50 550 38 HOH HOH . C 3 HOH A 51 551 40 HOH HOH . C 3 HOH A 52 552 10 HOH HOH . C 3 HOH A 53 553 61 HOH HOH . C 3 HOH A 54 554 64 HOH HOH . C 3 HOH A 55 555 1 HOH HOH . C 3 HOH A 56 556 27 HOH HOH . C 3 HOH A 57 557 6 HOH HOH . C 3 HOH A 58 558 96 HOH HOH . C 3 HOH A 59 559 23 HOH HOH . C 3 HOH A 60 560 97 HOH HOH . C 3 HOH A 61 561 73 HOH HOH . C 3 HOH A 62 562 76 HOH HOH . C 3 HOH A 63 563 60 HOH HOH . C 3 HOH A 64 564 78 HOH HOH . C 3 HOH A 65 565 11 HOH HOH . C 3 HOH A 66 566 65 HOH HOH . C 3 HOH A 67 567 59 HOH HOH . C 3 HOH A 68 568 42 HOH HOH . C 3 HOH A 69 569 39 HOH HOH . C 3 HOH A 70 570 45 HOH HOH . C 3 HOH A 71 571 58 HOH HOH . C 3 HOH A 72 572 69 HOH HOH . C 3 HOH A 73 573 72 HOH HOH . C 3 HOH A 74 574 95 HOH HOH . C 3 HOH A 75 575 53 HOH HOH . C 3 HOH A 76 576 66 HOH HOH . C 3 HOH A 77 577 70 HOH HOH . C 3 HOH A 78 578 35 HOH HOH . C 3 HOH A 79 579 24 HOH HOH . C 3 HOH A 80 580 47 HOH HOH . C 3 HOH A 81 581 63 HOH HOH . C 3 HOH A 82 582 71 HOH HOH . C 3 HOH A 83 583 22 HOH HOH . C 3 HOH A 84 584 57 HOH HOH . C 3 HOH A 85 585 86 HOH HOH . C 3 HOH A 86 586 26 HOH HOH . C 3 HOH A 87 587 81 HOH HOH . C 3 HOH A 88 588 100 HOH HOH . C 3 HOH A 89 589 98 HOH HOH . C 3 HOH A 90 590 55 HOH HOH . C 3 HOH A 91 591 54 HOH HOH . C 3 HOH A 92 592 12 HOH HOH . C 3 HOH A 93 593 5 HOH HOH . C 3 HOH A 94 594 37 HOH HOH . C 3 HOH A 95 595 50 HOH HOH . C 3 HOH A 96 596 77 HOH HOH . C 3 HOH A 97 597 74 HOH HOH . C 3 HOH A 98 598 90 HOH HOH . C 3 HOH A 99 599 83 HOH HOH . C 3 HOH A 100 600 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EJF . . . B 2 -26.499 -10.482 4.687 1 68.01 ? C10 EJF 401 A 1 HETATM 2 C C13 EJF . . . B 2 -27.543 -6.809 5.469 1 60.68 ? C13 EJF 401 A 1 HETATM 3 C C15 EJF . . . B 2 -26.321 -7.869 7.223 1 57.69 ? C15 EJF 401 A 1 HETATM 4 C C20 EJF . . . B 2 -24.825 -12.035 1.915 1 55.96 ? C20 EJF 401 A 1 HETATM 5 C C21 EJF . . . B 2 -23.821 -14.21 1.14 1 40.21 ? C21 EJF 401 A 1 HETATM 6 C C24 EJF . . . B 2 -25.281 -18.84 6.655 1 39.19 ? C24 EJF 401 A 1 HETATM 7 C C26 EJF . . . B 2 -24.899 -17.56 7.38 1 34.17 ? C26 EJF 401 A 1 HETATM 8 C C28 EJF . . . B 2 -21.311 -18.966 2.277 1 45.95 ? C28 EJF 401 A 1 HETATM 9 C C02 EJF . . . B 2 -23.397 -18.204 3.418 1 41.93 ? C02 EJF 401 A 1 HETATM 10 C C03 EJF . . . B 2 -24.15 -17.671 4.649 1 34.72 ? C03 EJF 401 A 1 HETATM 11 C C05 EJF . . . B 2 -24.229 -15.321 3.842 1 43.09 ? C05 EJF 401 A 1 HETATM 12 C C06 EJF . . . B 2 -25.031 -14.103 3.402 1 47.44 ? C06 EJF 401 A 1 HETATM 13 C C08 EJF . . . B 2 -25.21 -12.603 5.724 1 57.94 ? C08 EJF 401 A 1 HETATM 14 C C09 EJF . . . B 2 -25.787 -11.148 5.657 1 64.75 ? C09 EJF 401 A 1 HETATM 15 C C11 EJF . . . B 2 -26.775 -9.137 5.204 1 67.97 ? C11 EJF 401 A 1 HETATM 16 C C12 EJF . . . B 2 -27.447 -8 4.694 1 63.64 ? C12 EJF 401 A 1 HETATM 17 C C14 EJF . . . B 2 -26.983 -6.76 6.721 1 61.28 ? C14 EJF 401 A 1 HETATM 18 C C16 EJF . . . B 2 -26.22 -9.079 6.437 1 63.6 ? C16 EJF 401 A 1 HETATM 19 C C19 EJF . . . B 2 -24.174 -13.347 2.348 1 52.95 ? C19 EJF 401 A 1 HETATM 20 C C23 EJF . . . B 2 -25.146 -18.763 5.149 1 40.53 ? C23 EJF 401 A 1 HETATM 21 C C25 EJF . . . B 2 -26.673 -19.36 7.077 1 35.67 ? C25 EJF 401 A 1 HETATM 22 C C29 EJF . . . B 2 -20.845 -20.349 2.575 1 35.42 ? C29 EJF 401 A 1 HETATM 23 C C31 EJF . . . B 2 -20.091 -18.064 1.891 1 35.55 ? C31 EJF 401 A 1 HETATM 24 C C32 EJF . . . B 2 -20.418 -16.646 1.562 1 36.68 ? C32 EJF 401 A 1 HETATM 25 C C33 EJF . . . B 2 -21.003 -16.555 0.166 1 37.14 ? C33 EJF 401 A 1 HETATM 26 C C34 EJF . . . B 2 -20.469 -15.445 -0.4 1 31.88 ? C34 EJF 401 A 1 HETATM 27 C C36 EJF . . . B 2 -19.068 -15.861 1.465 1 38.66 ? C36 EJF 401 A 1 HETATM 28 N N04 EJF . . . B 2 -24.927 -16.559 4.219 1 41.95 ? N04 EJF 401 A 1 HETATM 29 N N07 EJF . . . B 2 -24.949 -13.684 4.776 1 50.65 ? N07 EJF 401 A 1 HETATM 30 N N17 EJF . . . B 2 -25.62 -10.316 6.702 1 58.24 ? N17 EJF 401 A 1 HETATM 31 N N27 EJF . . . B 2 -21.951 -18.477 3.479 1 40.83 ? N27 EJF 401 A 1 HETATM 32 N N35 EJF . . . B 2 -19.105 -15.184 0.308 1 36.25 ? N35 EJF 401 A 1 HETATM 33 O O01 EJF . . . B 2 -23.978 -18.38 2.395 1 39.4 ? O01 EJF 401 A 1 HETATM 34 O O18 EJF . . . B 2 -24.9 -12.912 6.819 1 61.82 ? O18 EJF 401 A 1 HETATM 35 O O22 EJF . . . B 2 -23.054 -15.262 3.995 1 43.64 ? O22 EJF 401 A 1 HETATM 36 O O30 EJF . . . B 2 -21.036 -21.196 1.809 1 35.22 ? O30 EJF 401 A 1 HETATM 37 O O37 EJF . . . B 2 -18.196 -15.886 2.246 1 39.77 ? O37 EJF 401 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 37 #