data_6LNY # _model_server_result.job_id CLRWl5nX1zDb-BPh9kT5Fg _model_server_result.datetime_utc '2024-11-04 18:01:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6LNY # _exptl.entry_id 6LNY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.51 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S})-4-methyl-~{N}-[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-2-[[(~{E})-3-phenylprop-2-enoyl]amino]pentanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.49 _cell.angle_gamma 90 _cell.entry_id 6LNY _cell.length_a 109.049 _cell.length_b 80.67 _cell.length_c 53.407 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H31 N3 O4' _chem_comp.formula_weight 413.51 _chem_comp.id EOC _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S})-4-methyl-~{N}-[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-2-[[(~{E})-3-phenylprop-2-enoyl]amino]pentanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 EOC sing 83 n n C29 N30 EOC sing 84 n n C28 C27 EOC sing 85 n n N30 C02 EOC sing 86 n n C27 C03 EOC sing 87 n n C02 C03 EOC sing 88 n n C02 O01 EOC doub 89 n n C03 C04 EOC sing 90 n n O07 C06 EOC doub 91 n n C17 C16 EOC doub 92 n y C17 C18 EOC sing 93 n y C16 C15 EOC sing 94 n y C04 C05 EOC sing 95 n n C05 C06 EOC sing 96 n n C05 N08 EOC sing 97 n n O26 C09 EOC doub 98 n n C18 C19 EOC doub 99 n y C15 C14 EOC sing 100 n n C15 C20 EOC doub 101 n y C14 C13 EOC doub 102 e n C09 N08 EOC sing 103 n n C09 C10 EOC sing 104 n n C19 C20 EOC sing 105 n y O21 C12 EOC doub 106 n n C13 C12 EOC sing 107 n n C12 N11 EOC sing 108 n n N11 C10 EOC sing 109 n n C10 C22 EOC sing 110 n n C22 C23 EOC sing 111 n n C23 C25 EOC sing 112 n n C23 C24 EOC sing 113 n n C10 H1 EOC sing 114 n n C13 H2 EOC sing 115 n n C17 H4 EOC sing 116 n n C20 H5 EOC sing 117 n n C22 H6 EOC sing 118 n n C22 H7 EOC sing 119 n n C24 H8 EOC sing 120 n n C24 H9 EOC sing 121 n n C24 H10 EOC sing 122 n n C28 H11 EOC sing 123 n n C28 H12 EOC sing 124 n n C03 H13 EOC sing 125 n n C04 H14 EOC sing 126 n n C04 H15 EOC sing 127 n n C05 H16 EOC sing 128 n n C06 H17 EOC sing 129 n n C14 H18 EOC sing 130 n n C16 H20 EOC sing 131 n n C18 H21 EOC sing 132 n n C19 H22 EOC sing 133 n n C23 H23 EOC sing 134 n n C25 H24 EOC sing 135 n n C25 H25 EOC sing 136 n n C25 H26 EOC sing 137 n n C27 H27 EOC sing 138 n n C27 H28 EOC sing 139 n n C29 H29 EOC sing 140 n n C29 H30 EOC sing 141 n n N08 H31 EOC sing 142 n n N11 H32 EOC sing 143 n n N30 H33 EOC sing 144 n n # _atom_sites.entry_id 6LNY _atom_sites.fract_transf_matrix[1][1] 0.00917 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00237 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012396 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EOC A 1 401 1 EOC LIG . C 3 HOH A 1 501 68 HOH HOH . C 3 HOH A 2 502 64 HOH HOH . C 3 HOH A 3 503 41 HOH HOH . C 3 HOH A 4 504 96 HOH HOH . C 3 HOH A 5 505 14 HOH HOH . C 3 HOH A 6 506 102 HOH HOH . C 3 HOH A 7 507 75 HOH HOH . C 3 HOH A 8 508 1 HOH HOH . C 3 HOH A 9 509 62 HOH HOH . C 3 HOH A 10 510 60 HOH HOH . C 3 HOH A 11 511 61 HOH HOH . C 3 HOH A 12 512 9 HOH HOH . C 3 HOH A 13 513 35 HOH HOH . C 3 HOH A 14 514 4 HOH HOH . C 3 HOH A 15 515 100 HOH HOH . C 3 HOH A 16 516 93 HOH HOH . C 3 HOH A 17 517 6 HOH HOH . C 3 HOH A 18 518 81 HOH HOH . C 3 HOH A 19 519 50 HOH HOH . C 3 HOH A 20 520 77 HOH HOH . C 3 HOH A 21 521 53 HOH HOH . C 3 HOH A 22 522 89 HOH HOH . C 3 HOH A 23 523 38 HOH HOH . C 3 HOH A 24 524 104 HOH HOH . C 3 HOH A 25 525 29 HOH HOH . C 3 HOH A 26 526 67 HOH HOH . C 3 HOH A 27 527 40 HOH HOH . C 3 HOH A 28 528 92 HOH HOH . C 3 HOH A 29 529 37 HOH HOH . C 3 HOH A 30 530 43 HOH HOH . C 3 HOH A 31 531 91 HOH HOH . C 3 HOH A 32 532 25 HOH HOH . C 3 HOH A 33 533 90 HOH HOH . C 3 HOH A 34 534 66 HOH HOH . C 3 HOH A 35 535 48 HOH HOH . C 3 HOH A 36 536 11 HOH HOH . C 3 HOH A 37 537 95 HOH HOH . C 3 HOH A 38 538 22 HOH HOH . C 3 HOH A 39 539 107 HOH HOH . C 3 HOH A 40 540 69 HOH HOH . C 3 HOH A 41 541 45 HOH HOH . C 3 HOH A 42 542 23 HOH HOH . C 3 HOH A 43 543 39 HOH HOH . C 3 HOH A 44 544 51 HOH HOH . C 3 HOH A 45 545 34 HOH HOH . C 3 HOH A 46 546 65 HOH HOH . C 3 HOH A 47 547 5 HOH HOH . C 3 HOH A 48 548 3 HOH HOH . C 3 HOH A 49 549 27 HOH HOH . C 3 HOH A 50 550 85 HOH HOH . C 3 HOH A 51 551 12 HOH HOH . C 3 HOH A 52 552 86 HOH HOH . C 3 HOH A 53 553 16 HOH HOH . C 3 HOH A 54 554 30 HOH HOH . C 3 HOH A 55 555 13 HOH HOH . C 3 HOH A 56 556 58 HOH HOH . C 3 HOH A 57 557 20 HOH HOH . C 3 HOH A 58 558 54 HOH HOH . C 3 HOH A 59 559 84 HOH HOH . C 3 HOH A 60 560 7 HOH HOH . C 3 HOH A 61 561 94 HOH HOH . C 3 HOH A 62 562 32 HOH HOH . C 3 HOH A 63 563 24 HOH HOH . C 3 HOH A 64 564 33 HOH HOH . C 3 HOH A 65 565 72 HOH HOH . C 3 HOH A 66 566 46 HOH HOH . C 3 HOH A 67 567 71 HOH HOH . C 3 HOH A 68 568 56 HOH HOH . C 3 HOH A 69 569 78 HOH HOH . C 3 HOH A 70 570 70 HOH HOH . C 3 HOH A 71 571 108 HOH HOH . C 3 HOH A 72 572 44 HOH HOH . C 3 HOH A 73 573 55 HOH HOH . C 3 HOH A 74 574 87 HOH HOH . C 3 HOH A 75 575 57 HOH HOH . C 3 HOH A 76 576 49 HOH HOH . C 3 HOH A 77 577 10 HOH HOH . C 3 HOH A 78 578 2 HOH HOH . C 3 HOH A 79 579 19 HOH HOH . C 3 HOH A 80 580 21 HOH HOH . C 3 HOH A 81 581 83 HOH HOH . C 3 HOH A 82 582 18 HOH HOH . C 3 HOH A 83 583 105 HOH HOH . C 3 HOH A 84 584 15 HOH HOH . C 3 HOH A 85 585 26 HOH HOH . C 3 HOH A 86 586 101 HOH HOH . C 3 HOH A 87 587 31 HOH HOH . C 3 HOH A 88 588 8 HOH HOH . C 3 HOH A 89 589 52 HOH HOH . C 3 HOH A 90 590 79 HOH HOH . C 3 HOH A 91 591 47 HOH HOH . C 3 HOH A 92 592 103 HOH HOH . C 3 HOH A 93 593 17 HOH HOH . C 3 HOH A 94 594 80 HOH HOH . C 3 HOH A 95 595 88 HOH HOH . C 3 HOH A 96 596 28 HOH HOH . C 3 HOH A 97 597 73 HOH HOH . C 3 HOH A 98 598 106 HOH HOH . C 3 HOH A 99 599 42 HOH HOH . C 3 HOH A 100 600 109 HOH HOH . C 3 HOH A 101 601 99 HOH HOH . C 3 HOH A 102 602 98 HOH HOH . C 3 HOH A 103 603 59 HOH HOH . C 3 HOH A 104 604 97 HOH HOH . C 3 HOH A 105 605 82 HOH HOH . C 3 HOH A 106 606 74 HOH HOH . C 3 HOH A 107 607 63 HOH HOH . C 3 HOH A 108 608 36 HOH HOH . C 3 HOH A 109 609 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 EOC . . . B 2 -23.801 24.9 4.136 1 37.17 ? C12 EOC 401 A 1 HETATM 2 O O21 EOC . . . B 2 -22.651 24.666 3.912 1 34.44 ? O21 EOC 401 A 1 HETATM 3 C C13 EOC . . . B 2 -24.312 26.391 4.047 1 43.18 ? C13 EOC 401 A 1 HETATM 4 C C14 EOC . . . B 2 -24.226 26.885 2.823 1 47.79 ? C14 EOC 401 A 1 HETATM 5 C C15 EOC . . . B 2 -24.71 28.359 2.792 1 63.74 ? C15 EOC 401 A 1 HETATM 6 C C20 EOC . . . B 2 -25.395 28.872 3.873 1 58.7 ? C20 EOC 401 A 1 HETATM 7 C C19 EOC . . . B 2 -25.809 30.188 3.863 1 54.49 ? C19 EOC 401 A 1 HETATM 8 C C18 EOC . . . B 2 -25.522 30.995 2.748 1 58.28 ? C18 EOC 401 A 1 HETATM 9 C C17 EOC . . . B 2 -24.832 30.484 1.664 1 64.31 ? C17 EOC 401 A 1 HETATM 10 C C16 EOC . . . B 2 -24.412 29.167 1.674 1 68.55 ? C16 EOC 401 A 1 HETATM 11 N N11 EOC . . . B 2 -24.704 23.854 4.498 1 38.22 ? N11 EOC 401 A 1 HETATM 12 C C10 EOC . . . B 2 -24.22 22.492 4.604 1 31.11 ? C10 EOC 401 A 1 HETATM 13 C C09 EOC . . . B 2 -23.582 22.016 3.294 1 36.06 ? C09 EOC 401 A 1 HETATM 14 O O26 EOC . . . B 2 -24.183 22.017 2.288 1 38.74 ? O26 EOC 401 A 1 HETATM 15 C C22 EOC . . . B 2 -25.381 21.59 5.002 1 36.38 ? C22 EOC 401 A 1 HETATM 16 C C23 EOC . . . B 2 -25.539 21.37 6.562 1 40.47 ? C23 EOC 401 A 1 HETATM 17 C C24 EOC . . . B 2 -24.814 22.417 7.444 1 38.02 ? C24 EOC 401 A 1 HETATM 18 C C25 EOC . . . B 2 -26.987 21.255 6.977 1 41.41 ? C25 EOC 401 A 1 HETATM 19 C C28 EOC . . . B 2 -21.586 24.912 -0.134 1 32.16 ? C28 EOC 401 A 1 HETATM 20 C C05 EOC . . . B 2 -21.439 21.075 2.157 1 30.32 ? C05 EOC 401 A 1 HETATM 21 C C27 EOC . . . B 2 -21.48 23.554 0.403 1 31.93 ? C27 EOC 401 A 1 HETATM 22 C C02 EOC . . . B 2 -19.214 24.296 1.334 1 31.9 ? C02 EOC 401 A 1 HETATM 23 C C04 EOC . . . B 2 -20.235 21.973 1.829 1 28.06 ? C04 EOC 401 A 1 HETATM 24 C C06 EOC . . . B 2 -20.969 19.669 2.46 1 32.99 ? C06 EOC 401 A 1 HETATM 25 C C03 EOC . . . B 2 -20.589 23.49 1.527 1 31.5 ? C03 EOC 401 A 1 HETATM 26 C C29 EOC . . . B 2 -20.308 25.253 -0.836 1 31.1 ? C29 EOC 401 A 1 HETATM 27 N N08 EOC . . . B 2 -22.156 21.56 3.348 1 28.3 ? N08 EOC 401 A 1 HETATM 28 N N30 EOC . . . B 2 -19.089 25.2 0.082 1 34.52 ? N30 EOC 401 A 1 HETATM 29 O O07 EOC . . . B 2 -20.95 18.892 1.578 1 30.39 ? O07 EOC 401 A 1 HETATM 30 O O01 EOC . . . B 2 -18.329 24.196 2.126 1 27.71 ? O01 EOC 401 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #