data_6LOD # _model_server_result.job_id wNUoZAtFWDUU7Yuv3_ymwA _model_server_result.datetime_utc '2025-08-31 03:40:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1102}' # _entry.id 6LOD # _exptl.entry_id 6LOD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 609.018 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2S)-2-octadecanoyloxypropyl] octadecanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LOD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 L N N ? 8 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 73 A CYS 73 1_555 J CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 A SG CYS 76 A CYS 76 1_555 J CAC HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale3 A SG CYS 94 A CYS 94 1_555 G CAB HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale4 A SG CYS 97 A CYS 97 1_555 G CAC HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale5 A SG CYS 147 A CYS 147 1_555 I CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale6 A SG CYS 150 A CYS 150 1_555 I CAC HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale7 A SG CYS 224 A CYS 224 1_555 H CAC HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale8 B SG CYS 1 B CYS 78 1_555 L C1 EL6 . B EL6 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 sing covale ? covale9 E C ACE 1 E ACE 32 1_555 E N CYS 2 E CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 E SG CYS 2 E CYS 33 1_555 Q C1 EL6 . E EL6 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 sing covale ? covale11 E SG CYS 82 E CYS 113 1_555 R CAB HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? covale ? covale12 E SG CYS 85 E CYS 116 1_555 R CAC HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? metalc ? metalc1 A NE2 HIS 63 A HIS 63 1_555 J FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 G FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 A NE2 HIS 77 A HIS 77 1_555 J FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc4 A NE2 HIS 98 A HIS 98 1_555 G FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc5 A NE2 HIS 137 A HIS 137 1_555 I FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 A NE2 HIS 140 A HIS 140 1_555 K FE HEC . B HEC 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc7 A NE2 HIS 151 A HIS 151 1_555 I FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc8 A SD MET 168 A MET 168 1_555 H FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc9 A NE2 HIS 175 A HIS 175 1_555 K FE HEC . B HEC 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc10 A NE2 HIS 225 A HIS 225 1_555 H FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc11 B SG CYS 692 B CYS 769 1_555 M FE4 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc12 B SG CYS 695 B CYS 772 1_555 M FE1 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc13 B SG CYS 698 B CYS 775 1_555 M FE3 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc14 B SG CYS 702 B CYS 779 1_555 N FE3 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 sing metalc ? metalc15 B SG CYS 747 B CYS 824 1_555 O FE1 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc16 B SG CYS 750 B CYS 827 1_555 O FE4 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc17 B SG CYS 755 B CYS 832 1_555 O FE2 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 sing metalc ? metalc18 B SG CYS 759 B CYS 836 1_555 P FE4 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc19 B SG CYS 779 B CYS 856 1_555 P FE3 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc20 B SG CYS 785 B CYS 862 1_555 P FE1 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 sing metalc ? metalc21 B SG CYS 789 B CYS 866 1_555 O FE3 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc22 B SG CYS 841 B CYS 918 1_555 N FE2 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc23 B SG CYS 844 B CYS 921 1_555 N FE1 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc24 B SG CYS 871 B CYS 948 1_555 N FE4 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc25 B SG CYS 875 B CYS 952 1_555 M FE2 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 sing metalc ? metalc26 E NE2 HIS 86 E HIS 117 1_555 R FE HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc27 E SD MET 131 E MET 162 1_555 R FE HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C39 H76 O4' _chem_comp.formula_weight 609.018 _chem_comp.id EL6 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2S)-2-octadecanoyloxypropyl] octadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3I C3H EL6 sing 89 n n C2I C2H EL6 sing 90 n n C3H C3G EL6 sing 91 n n C2H C2G EL6 sing 92 n n C2E C2D EL6 sing 93 n n C2E C2F EL6 sing 94 n n C3G C3F EL6 sing 95 n n C3F C3E EL6 sing 96 n n C2G C2F EL6 sing 97 n n C2C C2D EL6 sing 98 n n C2C C2B EL6 sing 99 n n C1 C2 EL6 sing 100 n n C28 C29 EL6 sing 101 n n C28 C27 EL6 sing 102 n n C26 C27 EL6 sing 103 n n C26 C25 EL6 sing 104 n n C24 C23 EL6 sing 105 n n C24 C25 EL6 sing 106 n n C2A C2B EL6 sing 107 n n C2A C29 EL6 sing 108 n n C23 C22 EL6 sing 109 n n C3E C3D EL6 sing 110 n n O21 C2 EL6 sing 111 n n O21 C21 EL6 sing 112 n n C3 C2 EL6 sing 113 n n C3 O31 EL6 sing 114 n n O32 C31 EL6 doub 115 n n C22 C21 EL6 sing 116 n n C3D C3C EL6 sing 117 n n C21 O22 EL6 doub 118 n n C31 O31 EL6 sing 119 n n C31 C32 EL6 sing 120 n n C3C C3B EL6 sing 121 n n C33 C32 EL6 sing 122 n n C33 C34 EL6 sing 123 n n C34 C35 EL6 sing 124 n n C35 C36 EL6 sing 125 n n C36 C37 EL6 sing 126 n n C37 C38 EL6 sing 127 n n C3A C3B EL6 sing 128 n n C3A C39 EL6 sing 129 n n C38 C39 EL6 sing 130 n n C1 H1 EL6 sing 131 n n C1 H2 EL6 sing 132 n n C1 H3 EL6 sing 133 n n C2 H4 EL6 sing 134 n n C3 H5 EL6 sing 135 n n C3 H6 EL6 sing 136 n n C32 H7 EL6 sing 137 n n C32 H8 EL6 sing 138 n n C33 H9 EL6 sing 139 n n C33 H10 EL6 sing 140 n n C34 H11 EL6 sing 141 n n C34 H12 EL6 sing 142 n n C35 H13 EL6 sing 143 n n C35 H14 EL6 sing 144 n n C36 H15 EL6 sing 145 n n C36 H16 EL6 sing 146 n n C37 H17 EL6 sing 147 n n C37 H18 EL6 sing 148 n n C38 H19 EL6 sing 149 n n C38 H20 EL6 sing 150 n n C39 H21 EL6 sing 151 n n C39 H22 EL6 sing 152 n n C3A H23 EL6 sing 153 n n C3A H24 EL6 sing 154 n n C3B H25 EL6 sing 155 n n C3B H26 EL6 sing 156 n n C3C H27 EL6 sing 157 n n C3C H28 EL6 sing 158 n n C3D H29 EL6 sing 159 n n C3D H30 EL6 sing 160 n n C3E H31 EL6 sing 161 n n C3E H32 EL6 sing 162 n n C3F H33 EL6 sing 163 n n C3F H34 EL6 sing 164 n n C3G H35 EL6 sing 165 n n C3G H36 EL6 sing 166 n n C3H H37 EL6 sing 167 n n C3H H38 EL6 sing 168 n n C3I H39 EL6 sing 169 n n C3I H40 EL6 sing 170 n n C3I H41 EL6 sing 171 n n C22 H42 EL6 sing 172 n n C22 H43 EL6 sing 173 n n C23 H44 EL6 sing 174 n n C23 H45 EL6 sing 175 n n C24 H46 EL6 sing 176 n n C24 H47 EL6 sing 177 n n C25 H48 EL6 sing 178 n n C25 H49 EL6 sing 179 n n C26 H50 EL6 sing 180 n n C26 H51 EL6 sing 181 n n C27 H52 EL6 sing 182 n n C27 H53 EL6 sing 183 n n C28 H54 EL6 sing 184 n n C28 H55 EL6 sing 185 n n C29 H56 EL6 sing 186 n n C29 H57 EL6 sing 187 n n C2A H58 EL6 sing 188 n n C2A H59 EL6 sing 189 n n C2B H60 EL6 sing 190 n n C2B H61 EL6 sing 191 n n C2C H62 EL6 sing 192 n n C2C H63 EL6 sing 193 n n C2D H64 EL6 sing 194 n n C2D H65 EL6 sing 195 n n C2E H66 EL6 sing 196 n n C2E H67 EL6 sing 197 n n C2F H68 EL6 sing 198 n n C2F H69 EL6 sing 199 n n C2G H70 EL6 sing 200 n n C2G H71 EL6 sing 201 n n C2H H72 EL6 sing 202 n n C2H H73 EL6 sing 203 n n C2I H74 EL6 sing 204 n n C2I H75 EL6 sing 205 n n C2I H76 EL6 sing 206 n n # _atom_sites.entry_id 6LOD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 HEC A 1 301 305 HEC HEC . H 7 HEC A 1 302 301 HEC HEC . I 7 HEC A 1 303 303 HEC HEC . J 7 HEC A 1 304 304 HEC HEC . K 7 HEC B 1 1101 302 HEC HEC . L 8 EL6 B 1 1102 1107 EL6 3PE . M 9 SF4 B 1 1103 1101 SF4 SF4 . N 9 SF4 B 1 1104 1102 SF4 SF4 . O 9 SF4 B 1 1105 1103 SF4 SF4 . P 10 F3S B 1 1106 1104 F3S F3S . Q 8 EL6 E 1 201 202 EL6 3PE . R 7 HEC E 1 202 201 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EL6 . . . L 8 102.471 127.538 99.756 1 29.68 ? C1 EL6 1102 B 1 HETATM 2 C C2 EL6 . . . L 8 103.847 127.962 99.251 1 29.68 ? C2 EL6 1102 B 1 HETATM 3 C C3 EL6 . . . L 8 104.894 127.57 100.289 1 29.68 ? C3 EL6 1102 B 1 HETATM 4 O O31 EL6 . . . L 8 104.695 126.249 100.699 1 29.68 ? O31 EL6 1102 B 1 HETATM 5 O O32 EL6 . . . L 8 106.113 126.597 102.397 1 29.68 ? O32 EL6 1102 B 1 HETATM 6 C C31 EL6 . . . L 8 105.589 125.816 101.682 1 29.68 ? C31 EL6 1102 B 1 HETATM 7 C C32 EL6 . . . L 8 105.904 124.333 101.833 1 29.68 ? C32 EL6 1102 B 1 HETATM 8 C C33 EL6 . . . L 8 107.053 124.152 102.82 1 29.68 ? C33 EL6 1102 B 1 HETATM 9 C C34 EL6 . . . L 8 107.418 122.674 102.889 1 29.68 ? C34 EL6 1102 B 1 HETATM 10 C C35 EL6 . . . L 8 108.538 122.471 103.902 1 29.68 ? C35 EL6 1102 B 1 HETATM 11 C C36 EL6 . . . L 8 109.451 121.342 103.425 1 29.68 ? C36 EL6 1102 B 1 HETATM 12 C C37 EL6 . . . L 8 110.121 121.735 102.11 1 29.68 ? C37 EL6 1102 B 1 HETATM 13 C C38 EL6 . . . L 8 110.895 120.545 101.545 1 29.68 ? C38 EL6 1102 B 1 HETATM 14 C C39 EL6 . . . L 8 111.164 120.77 100.059 1 29.68 ? C39 EL6 1102 B 1 HETATM 15 O O21 EL6 . . . L 8 104.136 127.316 98.044 1 29.68 ? O21 EL6 1102 B 1 HETATM 16 O O22 EL6 . . . L 8 103.059 128.813 96.77 1 29.68 ? O22 EL6 1102 B 1 HETATM 17 C C21 EL6 . . . L 8 103.996 128.103 96.896 1 29.68 ? C21 EL6 1102 B 1 HETATM 18 C C22 EL6 . . . L 8 105.048 128.052 95.791 1 29.68 ? C22 EL6 1102 B 1 HETATM 19 C C23 EL6 . . . L 8 105.874 126.779 95.933 1 29.68 ? C23 EL6 1102 B 1 HETATM 20 C C24 EL6 . . . L 8 106.896 126.69 94.804 1 29.68 ? C24 EL6 1102 B 1 HETATM 21 C C25 EL6 . . . L 8 108.13 125.976 95.344 1 29.68 ? C25 EL6 1102 B 1 HETATM 22 C C26 EL6 . . . L 8 108.955 125.385 94.203 1 29.68 ? C26 EL6 1102 B 1 HETATM 23 C C27 EL6 . . . L 8 110.047 124.484 94.778 1 29.68 ? C27 EL6 1102 B 1 HETATM 24 C C28 EL6 . . . L 8 109.408 123.325 95.54 1 29.68 ? C28 EL6 1102 B 1 HETATM 25 C C29 EL6 . . . L 8 110.054 123.199 96.919 1 29.68 ? C29 EL6 1102 B 1 HETATM 26 C C2A EL6 . . . L 8 111.476 122.662 96.785 1 29.68 ? C2A EL6 1102 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #