data_6LOD # _model_server_result.job_id wRMOXk3MaT-uZjBUL8An6A _model_server_result.datetime_utc '2024-11-04 22:32:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":201}' # _entry.id 6LOD # _exptl.entry_id 6LOD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 609.018 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2S)-2-octadecanoyloxypropyl] octadecanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LOD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 L N N ? 8 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 73 A CYS 73 1_555 J CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 A SG CYS 76 A CYS 76 1_555 J CAC HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale3 A SG CYS 94 A CYS 94 1_555 G CAB HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale4 A SG CYS 97 A CYS 97 1_555 G CAC HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale5 A SG CYS 147 A CYS 147 1_555 I CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale6 A SG CYS 150 A CYS 150 1_555 I CAC HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale7 A SG CYS 224 A CYS 224 1_555 H CAC HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale8 B SG CYS 1 B CYS 78 1_555 L C1 EL6 . B EL6 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 sing covale ? covale9 E C ACE 1 E ACE 32 1_555 E N CYS 2 E CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 E SG CYS 2 E CYS 33 1_555 Q C1 EL6 . E EL6 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 sing covale ? covale11 E SG CYS 82 E CYS 113 1_555 R CAB HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? covale ? covale12 E SG CYS 85 E CYS 116 1_555 R CAC HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? metalc ? metalc1 A NE2 HIS 63 A HIS 63 1_555 J FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 G FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 A NE2 HIS 77 A HIS 77 1_555 J FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc4 A NE2 HIS 98 A HIS 98 1_555 G FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc5 A NE2 HIS 137 A HIS 137 1_555 I FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 A NE2 HIS 140 A HIS 140 1_555 K FE HEC . B HEC 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc7 A NE2 HIS 151 A HIS 151 1_555 I FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc8 A SD MET 168 A MET 168 1_555 H FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc9 A NE2 HIS 175 A HIS 175 1_555 K FE HEC . B HEC 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc10 A NE2 HIS 225 A HIS 225 1_555 H FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc11 B SG CYS 692 B CYS 769 1_555 M FE4 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc12 B SG CYS 695 B CYS 772 1_555 M FE1 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc13 B SG CYS 698 B CYS 775 1_555 M FE3 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc14 B SG CYS 702 B CYS 779 1_555 N FE3 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 sing metalc ? metalc15 B SG CYS 747 B CYS 824 1_555 O FE1 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc16 B SG CYS 750 B CYS 827 1_555 O FE4 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc17 B SG CYS 755 B CYS 832 1_555 O FE2 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 sing metalc ? metalc18 B SG CYS 759 B CYS 836 1_555 P FE4 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc19 B SG CYS 779 B CYS 856 1_555 P FE3 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc20 B SG CYS 785 B CYS 862 1_555 P FE1 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 sing metalc ? metalc21 B SG CYS 789 B CYS 866 1_555 O FE3 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc22 B SG CYS 841 B CYS 918 1_555 N FE2 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc23 B SG CYS 844 B CYS 921 1_555 N FE1 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc24 B SG CYS 871 B CYS 948 1_555 N FE4 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc25 B SG CYS 875 B CYS 952 1_555 M FE2 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 sing metalc ? metalc26 E NE2 HIS 86 E HIS 117 1_555 R FE HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc27 E SD MET 131 E MET 162 1_555 R FE HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C39 H76 O4' _chem_comp.formula_weight 609.018 _chem_comp.id EL6 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2S)-2-octadecanoyloxypropyl] octadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LOD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 HEC A 1 301 305 HEC HEC . H 7 HEC A 1 302 301 HEC HEC . I 7 HEC A 1 303 303 HEC HEC . J 7 HEC A 1 304 304 HEC HEC . K 7 HEC B 1 1101 302 HEC HEC . L 8 EL6 B 1 1102 1107 EL6 3PE . M 9 SF4 B 1 1103 1101 SF4 SF4 . N 9 SF4 B 1 1104 1102 SF4 SF4 . O 9 SF4 B 1 1105 1103 SF4 SF4 . P 10 F3S B 1 1106 1104 F3S F3S . Q 8 EL6 E 1 201 202 EL6 3PE . R 7 HEC E 1 202 201 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EL6 . . . Q 8 106.258 132.414 108.226 1 37.24 ? C1 EL6 201 E 1 HETATM 2 C C2 EL6 . . . Q 8 107.29 132.18 109.327 1 37.24 ? C2 EL6 201 E 1 HETATM 3 C C3 EL6 . . . Q 8 107.864 130.774 109.201 1 37.24 ? C3 EL6 201 E 1 HETATM 4 O O31 EL6 . . . Q 8 108.825 130.575 110.197 1 37.24 ? O31 EL6 201 E 1 HETATM 5 O O32 EL6 . . . Q 8 109.192 128.544 109.319 1 37.24 ? O32 EL6 201 E 1 HETATM 6 C C31 EL6 . . . Q 8 109.47 129.335 110.153 1 37.24 ? C31 EL6 201 E 1 HETATM 7 C C32 EL6 . . . Q 8 110.539 128.988 111.183 1 37.24 ? C32 EL6 201 E 1 HETATM 8 C C33 EL6 . . . Q 8 110.763 127.48 111.183 1 37.24 ? C33 EL6 201 E 1 HETATM 9 C C34 EL6 . . . Q 8 112.257 127.18 111.209 1 37.24 ? C34 EL6 201 E 1 HETATM 10 C C35 EL6 . . . Q 8 112.468 125.67 111.225 1 37.24 ? C35 EL6 201 E 1 HETATM 11 C C36 EL6 . . . Q 8 113.954 125.374 111.412 1 37.24 ? C36 EL6 201 E 1 HETATM 12 C C37 EL6 . . . Q 8 114.174 123.863 111.434 1 37.24 ? C37 EL6 201 E 1 HETATM 13 C C38 EL6 . . . Q 8 115.481 123.542 112.159 1 37.24 ? C38 EL6 201 E 1 HETATM 14 C C39 EL6 . . . Q 8 115.453 122.103 112.674 1 37.24 ? C39 EL6 201 E 1 HETATM 15 C C3A EL6 . . . Q 8 115.363 121.135 111.495 1 37.24 ? C3A EL6 201 E 1 HETATM 16 C C3B EL6 . . . Q 8 115.383 119.694 112.002 1 37.24 ? C3B EL6 201 E 1 HETATM 17 C C3C EL6 . . . Q 8 115.55 118.747 110.815 1 37.24 ? C3C EL6 201 E 1 HETATM 18 C C3D EL6 . . . Q 8 114.257 118.72 110.003 1 37.24 ? C3D EL6 201 E 1 HETATM 19 C C3E EL6 . . . Q 8 114.558 118.325 108.56 1 37.24 ? C3E EL6 201 E 1 HETATM 20 C C3F EL6 . . . Q 8 115.214 119.496 107.832 1 37.24 ? C3F EL6 201 E 1 HETATM 21 C C3G EL6 . . . Q 8 114.203 120.629 107.674 1 37.24 ? C3G EL6 201 E 1 HETATM 22 C C3H EL6 . . . Q 8 114.507 121.427 106.408 1 37.24 ? C3H EL6 201 E 1 HETATM 23 C C3I EL6 . . . Q 8 114.285 120.55 105.177 1 37.24 ? C3I EL6 201 E 1 HETATM 24 O O21 EL6 . . . Q 8 108.331 133.102 109.189 1 37.24 ? O21 EL6 201 E 1 HETATM 25 O O22 EL6 . . . Q 8 107.472 134.27 110.907 1 37.24 ? O22 EL6 201 E 1 HETATM 26 C C21 EL6 . . . Q 8 108.289 134.199 110.054 1 37.24 ? C21 EL6 201 E 1 HETATM 27 C C22 EL6 . . . Q 8 109.307 135.321 109.885 1 37.24 ? C22 EL6 201 E 1 HETATM 28 C C23 EL6 . . . Q 8 109.855 135.299 108.463 1 37.24 ? C23 EL6 201 E 1 HETATM 29 C C24 EL6 . . . Q 8 111.046 136.248 108.371 1 37.24 ? C24 EL6 201 E 1 HETATM 30 C C25 EL6 . . . Q 8 112.197 135.695 109.203 1 37.24 ? C25 EL6 201 E 1 HETATM 31 C C26 EL6 . . . Q 8 113.135 134.899 108.302 1 37.24 ? C26 EL6 201 E 1 HETATM 32 C C27 EL6 . . . Q 8 113.963 133.95 109.163 1 37.24 ? C27 EL6 201 E 1 HETATM 33 C C28 EL6 . . . Q 8 114.822 133.074 108.257 1 37.24 ? C28 EL6 201 E 1 HETATM 34 C C29 EL6 . . . Q 8 115.977 132.472 109.053 1 37.24 ? C29 EL6 201 E 1 HETATM 35 C C2A EL6 . . . Q 8 117.298 132.898 108.417 1 37.24 ? C2A EL6 201 E 1 HETATM 36 C C2B EL6 . . . Q 8 117.683 134.28 108.94 1 37.24 ? C2B EL6 201 E 1 HETATM 37 C C2C EL6 . . . Q 8 118.76 134.885 108.045 1 37.24 ? C2C EL6 201 E 1 HETATM 38 C C2D EL6 . . . Q 8 118.7 136.408 108.134 1 37.24 ? C2D EL6 201 E 1 HETATM 39 C C2E EL6 . . . Q 8 117.37 136.897 107.564 1 37.24 ? C2E EL6 201 E 1 HETATM 40 C C2F EL6 . . . Q 8 116.791 137.962 108.49 1 37.24 ? C2F EL6 201 E 1 HETATM 41 C C2G EL6 . . . Q 8 115.38 138.325 108.037 1 37.24 ? C2G EL6 201 E 1 HETATM 42 C C2H EL6 . . . Q 8 115.458 139.193 106.785 1 37.24 ? C2H EL6 201 E 1 HETATM 43 C C2I EL6 . . . Q 8 114.05 139.425 106.244 1 37.24 ? C2I EL6 201 E 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #