data_6LOD # _model_server_result.job_id W-fXDDkqi2UuJ1xmgRFw4g _model_server_result.datetime_utc '2025-08-31 16:08:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 6LOD # _exptl.entry_id 6LOD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LOD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N ? 7 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 73 A CYS 73 1_555 J CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 A SG CYS 76 A CYS 76 1_555 J CAC HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale3 A SG CYS 94 A CYS 94 1_555 G CAB HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale4 A SG CYS 97 A CYS 97 1_555 G CAC HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale5 A SG CYS 147 A CYS 147 1_555 I CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale6 A SG CYS 150 A CYS 150 1_555 I CAC HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale7 A SG CYS 224 A CYS 224 1_555 H CAC HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale8 B SG CYS 1 B CYS 78 1_555 L C1 EL6 . B EL6 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 sing covale ? covale9 E C ACE 1 E ACE 32 1_555 E N CYS 2 E CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 E SG CYS 2 E CYS 33 1_555 Q C1 EL6 . E EL6 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 sing covale ? covale11 E SG CYS 82 E CYS 113 1_555 R CAB HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? covale ? covale12 E SG CYS 85 E CYS 116 1_555 R CAC HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? metalc ? metalc1 A NE2 HIS 63 A HIS 63 1_555 J FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 G FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 A NE2 HIS 77 A HIS 77 1_555 J FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc4 A NE2 HIS 98 A HIS 98 1_555 G FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc5 A NE2 HIS 137 A HIS 137 1_555 I FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 A NE2 HIS 140 A HIS 140 1_555 K FE HEC . B HEC 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc7 A NE2 HIS 151 A HIS 151 1_555 I FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc8 A SD MET 168 A MET 168 1_555 H FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc9 A NE2 HIS 175 A HIS 175 1_555 K FE HEC . B HEC 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc10 A NE2 HIS 225 A HIS 225 1_555 H FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc11 B SG CYS 692 B CYS 769 1_555 M FE4 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc12 B SG CYS 695 B CYS 772 1_555 M FE1 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc13 B SG CYS 698 B CYS 775 1_555 M FE3 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc14 B SG CYS 702 B CYS 779 1_555 N FE3 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 sing metalc ? metalc15 B SG CYS 747 B CYS 824 1_555 O FE1 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc16 B SG CYS 750 B CYS 827 1_555 O FE4 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc17 B SG CYS 755 B CYS 832 1_555 O FE2 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 sing metalc ? metalc18 B SG CYS 759 B CYS 836 1_555 P FE4 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc19 B SG CYS 779 B CYS 856 1_555 P FE3 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc20 B SG CYS 785 B CYS 862 1_555 P FE1 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 sing metalc ? metalc21 B SG CYS 789 B CYS 866 1_555 O FE3 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc22 B SG CYS 841 B CYS 918 1_555 N FE2 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc23 B SG CYS 844 B CYS 921 1_555 N FE1 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc24 B SG CYS 871 B CYS 948 1_555 N FE4 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc25 B SG CYS 875 B CYS 952 1_555 M FE2 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 sing metalc ? metalc26 E NE2 HIS 86 E HIS 117 1_555 R FE HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc27 E SD MET 131 E MET 162 1_555 R FE HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 262 n n FE NB HEC sing 263 n n FE NC HEC sing 264 n n FE ND HEC sing 265 n n CHA C1A HEC doub 266 n n CHA C4D HEC sing 267 n n CHA HHA HEC sing 268 n n CHB C4A HEC doub 269 n n CHB C1B HEC sing 270 n n CHB HHB HEC sing 271 n n CHC C4B HEC doub 272 n n CHC C1C HEC sing 273 n n CHC HHC HEC sing 274 n n CHD C4C HEC doub 275 n n CHD C1D HEC sing 276 n n CHD HHD HEC sing 277 n n NA C1A HEC sing 278 n y NA C4A HEC sing 279 n y C1A C2A HEC sing 280 n y C2A C3A HEC doub 281 n y C2A CAA HEC sing 282 n n C3A C4A HEC sing 283 n y C3A CMA HEC sing 284 n n CMA HMA1 HEC sing 285 n n CMA HMA2 HEC sing 286 n n CMA HMA3 HEC sing 287 n n CAA CBA HEC sing 288 n n CAA HAA1 HEC sing 289 n n CAA HAA2 HEC sing 290 n n CBA CGA HEC sing 291 n n CBA HBA1 HEC sing 292 n n CBA HBA2 HEC sing 293 n n CGA O1A HEC doub 294 n n CGA O2A HEC sing 295 n n O2A H2A HEC sing 296 n n NB C1B HEC sing 297 n y NB C4B HEC sing 298 n y C1B C2B HEC doub 299 n y C2B C3B HEC sing 300 n y C2B CMB HEC sing 301 n n C3B C4B HEC sing 302 n y C3B CAB HEC doub 303 e n CMB HMB1 HEC sing 304 n n CMB HMB2 HEC sing 305 n n CMB HMB3 HEC sing 306 n n CAB CBB HEC sing 307 n n CAB HAB HEC sing 308 n n CBB HBB1 HEC sing 309 n n CBB HBB2 HEC sing 310 n n CBB HBB3 HEC sing 311 n n NC C1C HEC sing 312 n y NC C4C HEC sing 313 n y C1C C2C HEC doub 314 n y C2C C3C HEC sing 315 n y C2C CMC HEC sing 316 n n C3C C4C HEC sing 317 n y C3C CAC HEC doub 318 e n CMC HMC1 HEC sing 319 n n CMC HMC2 HEC sing 320 n n CMC HMC3 HEC sing 321 n n CAC CBC HEC sing 322 n n CAC HAC HEC sing 323 n n CBC HBC1 HEC sing 324 n n CBC HBC2 HEC sing 325 n n CBC HBC3 HEC sing 326 n n ND C1D HEC sing 327 n y ND C4D HEC sing 328 n y C1D C2D HEC doub 329 n y C2D C3D HEC sing 330 n y C2D CMD HEC sing 331 n n C3D C4D HEC doub 332 n y C3D CAD HEC sing 333 n n CMD HMD1 HEC sing 334 n n CMD HMD2 HEC sing 335 n n CMD HMD3 HEC sing 336 n n CAD CBD HEC sing 337 n n CAD HAD1 HEC sing 338 n n CAD HAD2 HEC sing 339 n n CBD CGD HEC sing 340 n n CBD HBD1 HEC sing 341 n n CBD HBD2 HEC sing 342 n n CGD O1D HEC doub 343 n n CGD O2D HEC sing 344 n n O2D H2D HEC sing 345 n n # _atom_sites.entry_id 6LOD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 HEC A 1 301 305 HEC HEC . H 7 HEC A 1 302 301 HEC HEC . I 7 HEC A 1 303 303 HEC HEC . J 7 HEC A 1 304 304 HEC HEC . K 7 HEC B 1 1101 302 HEC HEC . L 8 EL6 B 1 1102 1107 EL6 3PE . M 9 SF4 B 1 1103 1101 SF4 SF4 . N 9 SF4 B 1 1104 1102 SF4 SF4 . O 9 SF4 B 1 1105 1103 SF4 SF4 . P 10 F3S B 1 1106 1104 F3S F3S . Q 8 EL6 E 1 201 202 EL6 3PE . R 7 HEC E 1 202 201 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . G 7 84.132 164.377 120.549 1 37.08 ? FE HEC 301 A 1 HETATM 2 C CHA HEC . . . G 7 86.378 166.9 120.718 1 37.08 ? CHA HEC 301 A 1 HETATM 3 C CHB HEC . . . G 7 85.858 163.02 117.862 1 37.08 ? CHB HEC 301 A 1 HETATM 4 C CHC HEC . . . G 7 81.866 161.842 120.299 1 37.08 ? CHC HEC 301 A 1 HETATM 5 C CHD HEC . . . G 7 82.285 165.73 123.116 1 37.08 ? CHD HEC 301 A 1 HETATM 6 N NA HEC . . . G 7 85.789 164.85 119.495 1 37.08 ? NA HEC 301 A 1 HETATM 7 C C1A HEC . . . G 7 86.573 165.961 119.73 1 37.08 ? C1A HEC 301 A 1 HETATM 8 C C2A HEC . . . G 7 87.639 165.966 118.751 1 37.08 ? C2A HEC 301 A 1 HETATM 9 C C3A HEC . . . G 7 87.495 164.902 117.972 1 37.08 ? C3A HEC 301 A 1 HETATM 10 C C4A HEC . . . G 7 86.331 164.18 118.417 1 37.08 ? C4A HEC 301 A 1 HETATM 11 C CMA HEC . . . G 7 88.401 164.501 116.793 1 37.08 ? CMA HEC 301 A 1 HETATM 12 C CAA HEC . . . G 7 88.757 167.013 118.632 1 37.08 ? CAA HEC 301 A 1 HETATM 13 C CBA HEC . . . G 7 89.838 166.685 119.65 1 37.08 ? CBA HEC 301 A 1 HETATM 14 C CGA HEC . . . G 7 90.737 167.879 119.82 1 37.08 ? CGA HEC 301 A 1 HETATM 15 O O1A HEC . . . G 7 90.554 168.879 119.078 1 37.08 ? O1A HEC 301 A 1 HETATM 16 O O2A HEC . . . G 7 91.637 167.831 120.698 1 37.08 ? O2A HEC 301 A 1 HETATM 17 N NB HEC . . . G 7 83.913 162.766 119.319 1 37.08 ? NB HEC 301 A 1 HETATM 18 C C1B HEC . . . G 7 84.733 162.365 118.285 1 37.08 ? C1B HEC 301 A 1 HETATM 19 C C2B HEC . . . G 7 84.215 161.135 117.737 1 37.08 ? C2B HEC 301 A 1 HETATM 20 C C3B HEC . . . G 7 83.104 160.832 118.401 1 37.08 ? C3B HEC 301 A 1 HETATM 21 C C4B HEC . . . G 7 82.905 161.832 119.414 1 37.08 ? C4B HEC 301 A 1 HETATM 22 C CMB HEC . . . G 7 84.817 160.357 116.555 1 37.08 ? CMB HEC 301 A 1 HETATM 23 C CAB HEC . . . G 7 82.177 159.622 118.197 1 37.08 ? CAB HEC 301 A 1 HETATM 24 C CBB HEC . . . G 7 82.709 158.399 118.959 1 37.08 ? CBB HEC 301 A 1 HETATM 25 N NC HEC . . . G 7 82.415 163.893 121.513 1 37.08 ? NC HEC 301 A 1 HETATM 26 C C1C HEC . . . G 7 81.64 162.785 121.259 1 37.08 ? C1C HEC 301 A 1 HETATM 27 C C2C HEC . . . G 7 80.604 162.692 122.252 1 37.08 ? C2C HEC 301 A 1 HETATM 28 C C3C HEC . . . G 7 80.634 163.83 122.958 1 37.08 ? C3C HEC 301 A 1 HETATM 29 C C4C HEC . . . G 7 81.826 164.562 122.561 1 37.08 ? C4C HEC 301 A 1 HETATM 30 C CMC HEC . . . G 7 79.467 161.653 122.147 1 37.08 ? CMC HEC 301 A 1 HETATM 31 C CAC HEC . . . G 7 79.671 164.275 124.084 1 37.08 ? CAC HEC 301 A 1 HETATM 32 C CBC HEC . . . G 7 79.671 163.385 125.337 1 37.08 ? CBC HEC 301 A 1 HETATM 33 N ND HEC . . . G 7 84.298 166.058 121.731 1 37.08 ? ND HEC 301 A 1 HETATM 34 C C1D HEC . . . G 7 83.418 166.414 122.746 1 37.08 ? C1D HEC 301 A 1 HETATM 35 C C2D HEC . . . G 7 83.886 167.629 123.365 1 37.08 ? C2D HEC 301 A 1 HETATM 36 C C3D HEC . . . G 7 85.165 168 122.614 1 37.08 ? C3D HEC 301 A 1 HETATM 37 C C4D HEC . . . G 7 85.343 166.965 121.622 1 37.08 ? C4D HEC 301 A 1 HETATM 38 C CMD HEC . . . G 7 83.23 168.397 124.53 1 37.08 ? CMD HEC 301 A 1 HETATM 39 C CAD HEC . . . G 7 86.071 169.219 122.879 1 37.08 ? CAD HEC 301 A 1 HETATM 40 C CBD HEC . . . G 7 85.84 170.287 121.819 1 37.08 ? CBD HEC 301 A 1 HETATM 41 C CGD HEC . . . G 7 87.104 171.08 121.637 1 37.08 ? CGD HEC 301 A 1 HETATM 42 O O1D HEC . . . G 7 87.09 172.063 120.854 1 37.08 ? O1D HEC 301 A 1 HETATM 43 O O2D HEC . . . G 7 88.129 170.729 122.275 1 37.08 ? O2D HEC 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #