data_6LOD # _model_server_result.job_id B9jc2dAjDFYouIBFHAUOMg _model_server_result.datetime_utc '2024-11-04 22:36:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 6LOD # _exptl.entry_id 6LOD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LOD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N ? 7 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 73 A CYS 73 1_555 J CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 A SG CYS 76 A CYS 76 1_555 J CAC HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale3 A SG CYS 94 A CYS 94 1_555 G CAB HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale4 A SG CYS 97 A CYS 97 1_555 G CAC HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale5 A SG CYS 147 A CYS 147 1_555 I CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale6 A SG CYS 150 A CYS 150 1_555 I CAC HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale7 A SG CYS 224 A CYS 224 1_555 H CAC HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale8 B SG CYS 1 B CYS 78 1_555 L C1 EL6 . B EL6 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 sing covale ? covale9 E C ACE 1 E ACE 32 1_555 E N CYS 2 E CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 E SG CYS 2 E CYS 33 1_555 Q C1 EL6 . E EL6 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 sing covale ? covale11 E SG CYS 82 E CYS 113 1_555 R CAB HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? covale ? covale12 E SG CYS 85 E CYS 116 1_555 R CAC HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? metalc ? metalc1 A NE2 HIS 63 A HIS 63 1_555 J FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 G FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 A NE2 HIS 77 A HIS 77 1_555 J FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc4 A NE2 HIS 98 A HIS 98 1_555 G FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc5 A NE2 HIS 137 A HIS 137 1_555 I FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 A NE2 HIS 140 A HIS 140 1_555 K FE HEC . B HEC 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc7 A NE2 HIS 151 A HIS 151 1_555 I FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc8 A SD MET 168 A MET 168 1_555 H FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc9 A NE2 HIS 175 A HIS 175 1_555 K FE HEC . B HEC 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc10 A NE2 HIS 225 A HIS 225 1_555 H FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc11 B SG CYS 692 B CYS 769 1_555 M FE4 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc12 B SG CYS 695 B CYS 772 1_555 M FE1 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc13 B SG CYS 698 B CYS 775 1_555 M FE3 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc14 B SG CYS 702 B CYS 779 1_555 N FE3 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 sing metalc ? metalc15 B SG CYS 747 B CYS 824 1_555 O FE1 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc16 B SG CYS 750 B CYS 827 1_555 O FE4 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc17 B SG CYS 755 B CYS 832 1_555 O FE2 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 sing metalc ? metalc18 B SG CYS 759 B CYS 836 1_555 P FE4 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc19 B SG CYS 779 B CYS 856 1_555 P FE3 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc20 B SG CYS 785 B CYS 862 1_555 P FE1 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 sing metalc ? metalc21 B SG CYS 789 B CYS 866 1_555 O FE3 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc22 B SG CYS 841 B CYS 918 1_555 N FE2 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc23 B SG CYS 844 B CYS 921 1_555 N FE1 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc24 B SG CYS 871 B CYS 948 1_555 N FE4 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc25 B SG CYS 875 B CYS 952 1_555 M FE2 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 sing metalc ? metalc26 E NE2 HIS 86 E HIS 117 1_555 R FE HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc27 E SD MET 131 E MET 162 1_555 R FE HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LOD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 HEC A 1 301 305 HEC HEC . H 7 HEC A 1 302 301 HEC HEC . I 7 HEC A 1 303 303 HEC HEC . J 7 HEC A 1 304 304 HEC HEC . K 7 HEC B 1 1101 302 HEC HEC . L 8 EL6 B 1 1102 1107 EL6 3PE . M 9 SF4 B 1 1103 1101 SF4 SF4 . N 9 SF4 B 1 1104 1102 SF4 SF4 . O 9 SF4 B 1 1105 1103 SF4 SF4 . P 10 F3S B 1 1106 1104 F3S F3S . Q 8 EL6 E 1 201 202 EL6 3PE . R 7 HEC E 1 202 201 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . H 7 95.565 128.972 120.932 1 16.27 ? FE HEC 302 A 1 HETATM 2 C CHA HEC . . . H 7 96.594 131.11 118.441 1 16.27 ? CHA HEC 302 A 1 HETATM 3 C CHB HEC . . . H 7 96.665 126.328 119.132 1 16.27 ? CHB HEC 302 A 1 HETATM 4 C CHC HEC . . . H 7 94.108 126.76 123.16 1 16.27 ? CHC HEC 302 A 1 HETATM 5 C CHD HEC . . . H 7 94.181 131.591 122.62 1 16.27 ? CHD HEC 302 A 1 HETATM 6 N NA HEC . . . H 7 96.371 128.773 119.122 1 16.27 ? NA HEC 302 A 1 HETATM 7 C C1A HEC . . . H 7 96.857 129.778 118.316 1 16.27 ? C1A HEC 302 A 1 HETATM 8 C C2A HEC . . . H 7 97.697 129.199 117.302 1 16.27 ? C2A HEC 302 A 1 HETATM 9 C C3A HEC . . . H 7 97.709 127.888 117.511 1 16.27 ? C3A HEC 302 A 1 HETATM 10 C C4A HEC . . . H 7 96.881 127.59 118.643 1 16.27 ? C4A HEC 302 A 1 HETATM 11 C CMA HEC . . . H 7 98.465 126.814 116.729 1 16.27 ? CMA HEC 302 A 1 HETATM 12 C CAA HEC . . . H 7 98.448 130.002 116.221 1 16.27 ? CAA HEC 302 A 1 HETATM 13 C CBA HEC . . . H 7 97.856 129.793 114.838 1 16.27 ? CBA HEC 302 A 1 HETATM 14 C CGA HEC . . . H 7 98.73 130.443 113.813 1 16.27 ? CGA HEC 302 A 1 HETATM 15 O O1A HEC . . . H 7 99.676 131.18 114.191 1 16.27 ? O1A HEC 302 A 1 HETATM 16 O O2A HEC . . . H 7 98.463 130.222 112.613 1 16.27 ? O2A HEC 302 A 1 HETATM 17 N NB HEC . . . H 7 95.359 126.88 121.126 1 16.27 ? NB HEC 302 A 1 HETATM 18 C C1B HEC . . . H 7 95.996 126.01 120.28 1 16.27 ? C1B HEC 302 A 1 HETATM 19 C C2B HEC . . . H 7 95.864 124.691 120.821 1 16.27 ? C2B HEC 302 A 1 HETATM 20 C C3B HEC . . . H 7 95.168 124.733 121.943 1 16.27 ? C3B HEC 302 A 1 HETATM 21 C C4B HEC . . . H 7 94.815 126.14 122.159 1 16.27 ? C4B HEC 302 A 1 HETATM 22 C CMB HEC . . . H 7 96.427 123.401 120.2 1 16.27 ? CMB HEC 302 A 1 HETATM 23 C CAB HEC . . . H 7 94.917 123.382 122.668 1 16.27 ? CAB HEC 302 A 1 HETATM 24 C CBB HEC . . . H 7 94.239 123.394 124.042 1 16.27 ? CBB HEC 302 A 1 HETATM 25 N NC HEC . . . H 7 94.396 129.136 122.534 1 16.27 ? NC HEC 302 A 1 HETATM 26 C C1C HEC . . . H 7 93.903 128.11 123.317 1 16.27 ? C1C HEC 302 A 1 HETATM 27 C C2C HEC . . . H 7 93.287 128.692 124.479 1 16.27 ? C2C HEC 302 A 1 HETATM 28 C C3C HEC . . . H 7 93.136 129.994 124.232 1 16.27 ? C3C HEC 302 A 1 HETATM 29 C C4C HEC . . . H 7 93.937 130.319 123.078 1 16.27 ? C4C HEC 302 A 1 HETATM 30 C CMC HEC . . . H 7 92.42 127.83 125.41 1 16.27 ? CMC HEC 302 A 1 HETATM 31 C CAC HEC . . . H 7 92.423 131.04 125.108 1 16.27 ? CAC HEC 302 A 1 HETATM 32 C CBC HEC . . . H 7 93.165 131.247 126.439 1 16.27 ? CBC HEC 302 A 1 HETATM 33 N ND HEC . . . H 7 95.38 131.027 120.566 1 16.27 ? ND HEC 302 A 1 HETATM 34 C C1D HEC . . . H 7 94.828 131.926 121.465 1 16.27 ? C1D HEC 302 A 1 HETATM 35 C C2D HEC . . . H 7 95.052 133.27 120.997 1 16.27 ? C2D HEC 302 A 1 HETATM 36 C C3D HEC . . . H 7 95.814 133.114 119.686 1 16.27 ? C3D HEC 302 A 1 HETATM 37 C C4D HEC . . . H 7 95.968 131.697 119.506 1 16.27 ? C4D HEC 302 A 1 HETATM 38 C CMD HEC . . . H 7 94.637 134.585 121.681 1 16.27 ? CMD HEC 302 A 1 HETATM 39 C CAD HEC . . . H 7 96.328 134.223 118.756 1 16.27 ? CAD HEC 302 A 1 HETATM 40 C CBD HEC . . . H 7 97.816 134.356 119.03 1 16.27 ? CBD HEC 302 A 1 HETATM 41 C CGD HEC . . . H 7 98.466 135.09 117.902 1 16.27 ? CGD HEC 302 A 1 HETATM 42 O O1D HEC . . . H 7 97.868 136.077 117.408 1 16.27 ? O1D HEC 302 A 1 HETATM 43 O O2D HEC . . . H 7 99.593 134.694 117.511 1 16.27 ? O2D HEC 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #