data_6LOD # _model_server_result.job_id V0B1JNN1XSCincgTP4jM6w _model_server_result.datetime_utc '2024-11-04 22:37:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":304}' # _entry.id 6LOD # _exptl.entry_id 6LOD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LOD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N ? 7 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 73 A CYS 73 1_555 J CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 A SG CYS 76 A CYS 76 1_555 J CAC HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale3 A SG CYS 94 A CYS 94 1_555 G CAB HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale4 A SG CYS 97 A CYS 97 1_555 G CAC HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale5 A SG CYS 147 A CYS 147 1_555 I CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale6 A SG CYS 150 A CYS 150 1_555 I CAC HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale7 A SG CYS 224 A CYS 224 1_555 H CAC HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale8 B SG CYS 1 B CYS 78 1_555 L C1 EL6 . B EL6 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 sing covale ? covale9 E C ACE 1 E ACE 32 1_555 E N CYS 2 E CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 E SG CYS 2 E CYS 33 1_555 Q C1 EL6 . E EL6 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 sing covale ? covale11 E SG CYS 82 E CYS 113 1_555 R CAB HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? covale ? covale12 E SG CYS 85 E CYS 116 1_555 R CAC HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? metalc ? metalc1 A NE2 HIS 63 A HIS 63 1_555 J FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 G FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 A NE2 HIS 77 A HIS 77 1_555 J FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc4 A NE2 HIS 98 A HIS 98 1_555 G FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc5 A NE2 HIS 137 A HIS 137 1_555 I FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 A NE2 HIS 140 A HIS 140 1_555 K FE HEC . B HEC 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc7 A NE2 HIS 151 A HIS 151 1_555 I FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc8 A SD MET 168 A MET 168 1_555 H FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc9 A NE2 HIS 175 A HIS 175 1_555 K FE HEC . B HEC 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc10 A NE2 HIS 225 A HIS 225 1_555 H FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc11 B SG CYS 692 B CYS 769 1_555 M FE4 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc12 B SG CYS 695 B CYS 772 1_555 M FE1 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc13 B SG CYS 698 B CYS 775 1_555 M FE3 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc14 B SG CYS 702 B CYS 779 1_555 N FE3 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 sing metalc ? metalc15 B SG CYS 747 B CYS 824 1_555 O FE1 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc16 B SG CYS 750 B CYS 827 1_555 O FE4 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc17 B SG CYS 755 B CYS 832 1_555 O FE2 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 sing metalc ? metalc18 B SG CYS 759 B CYS 836 1_555 P FE4 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc19 B SG CYS 779 B CYS 856 1_555 P FE3 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc20 B SG CYS 785 B CYS 862 1_555 P FE1 F3S . B F3S 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 sing metalc ? metalc21 B SG CYS 789 B CYS 866 1_555 O FE3 SF4 . B SF4 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc22 B SG CYS 841 B CYS 918 1_555 N FE2 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc23 B SG CYS 844 B CYS 921 1_555 N FE1 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc24 B SG CYS 871 B CYS 948 1_555 N FE4 SF4 . B SF4 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc25 B SG CYS 875 B CYS 952 1_555 M FE2 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 sing metalc ? metalc26 E NE2 HIS 86 E HIS 117 1_555 R FE HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc27 E SD MET 131 E MET 162 1_555 R FE HEC . E HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LOD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 HEC A 1 301 305 HEC HEC . H 7 HEC A 1 302 301 HEC HEC . I 7 HEC A 1 303 303 HEC HEC . J 7 HEC A 1 304 304 HEC HEC . K 7 HEC B 1 1101 302 HEC HEC . L 8 EL6 B 1 1102 1107 EL6 3PE . M 9 SF4 B 1 1103 1101 SF4 SF4 . N 9 SF4 B 1 1104 1102 SF4 SF4 . O 9 SF4 B 1 1105 1103 SF4 SF4 . P 10 F3S B 1 1106 1104 F3S F3S . Q 8 EL6 E 1 201 202 EL6 3PE . R 7 HEC E 1 202 201 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . J 7 86.984 153.26 123.086 1 28.55 ? FE HEC 304 A 1 HETATM 2 C CHA HEC . . . J 7 88.293 152.2 120.15 1 28.55 ? CHA HEC 304 A 1 HETATM 3 C CHB HEC . . . J 7 88.949 150.968 124.777 1 28.55 ? CHB HEC 304 A 1 HETATM 4 C CHC HEC . . . J 7 85.749 154.347 126.084 1 28.55 ? CHC HEC 304 A 1 HETATM 5 C CHD HEC . . . J 7 84.879 155.42 121.443 1 28.55 ? CHD HEC 304 A 1 HETATM 6 N NA HEC . . . J 7 88.335 151.862 122.584 1 28.55 ? NA HEC 304 A 1 HETATM 7 C C1A HEC . . . J 7 88.742 151.6 121.295 1 28.55 ? C1A HEC 304 A 1 HETATM 8 C C2A HEC . . . J 7 89.745 150.571 121.35 1 28.55 ? C2A HEC 304 A 1 HETATM 9 C C3A HEC . . . J 7 89.931 150.227 122.611 1 28.55 ? C3A HEC 304 A 1 HETATM 10 C C4A HEC . . . J 7 89.052 151.027 123.417 1 28.55 ? C4A HEC 304 A 1 HETATM 11 C CMA HEC . . . J 7 90.917 149.16 123.113 1 28.55 ? CMA HEC 304 A 1 HETATM 12 C CAA HEC . . . J 7 90.491 149.969 120.156 1 28.55 ? CAA HEC 304 A 1 HETATM 13 C CBA HEC . . . J 7 89.597 148.978 119.452 1 28.55 ? CBA HEC 304 A 1 HETATM 14 C CGA HEC . . . J 7 90.303 148.57 118.2 1 28.55 ? CGA HEC 304 A 1 HETATM 15 O O1A HEC . . . J 7 90.307 149.379 117.242 1 28.55 ? O1A HEC 304 A 1 HETATM 16 O O2A HEC . . . J 7 90.858 147.447 118.172 1 28.55 ? O2A HEC 304 A 1 HETATM 17 N NB HEC . . . J 7 87.27 152.735 125.049 1 28.55 ? NB HEC 304 A 1 HETATM 18 C C1B HEC . . . J 7 88.17 151.808 125.528 1 28.55 ? C1B HEC 304 A 1 HETATM 19 C C2B HEC . . . J 7 88.179 151.873 126.966 1 28.55 ? C2B HEC 304 A 1 HETATM 20 C C3B HEC . . . J 7 87.28 152.784 127.341 1 28.55 ? C3B HEC 304 A 1 HETATM 21 C C4B HEC . . . J 7 86.705 153.36 126.14 1 28.55 ? C4B HEC 304 A 1 HETATM 22 C CMB HEC . . . J 7 89.057 150.967 127.856 1 28.55 ? CMB HEC 304 A 1 HETATM 23 C CAB HEC . . . J 7 86.938 153.215 128.779 1 28.55 ? CAB HEC 304 A 1 HETATM 24 C CBB HEC . . . J 7 87.996 154.228 129.254 1 28.55 ? CBB HEC 304 A 1 HETATM 25 N NC HEC . . . J 7 85.594 154.614 123.653 1 28.55 ? NC HEC 304 A 1 HETATM 26 C C1C HEC . . . J 7 85.233 154.918 124.946 1 28.55 ? C1C HEC 304 A 1 HETATM 27 C C2C HEC . . . J 7 84.29 156.012 124.915 1 28.55 ? C2C HEC 304 A 1 HETATM 28 C C3C HEC . . . J 7 83.972 156.245 123.631 1 28.55 ? C3C HEC 304 A 1 HETATM 29 C C4C HEC . . . J 7 84.841 155.415 122.818 1 28.55 ? C4C HEC 304 A 1 HETATM 30 C CMC HEC . . . J 7 83.564 156.507 126.187 1 28.55 ? CMC HEC 304 A 1 HETATM 31 C CAC HEC . . . J 7 82.943 157.24 123.032 1 28.55 ? CAC HEC 304 A 1 HETATM 32 C CBC HEC . . . J 7 83.126 158.737 123.344 1 28.55 ? CBC HEC 304 A 1 HETATM 33 N ND HEC . . . J 7 86.614 153.721 121.109 1 28.55 ? ND HEC 304 A 1 HETATM 34 C C1D HEC . . . J 7 85.737 154.698 120.655 1 28.55 ? C1D HEC 304 A 1 HETATM 35 C C2D HEC . . . J 7 85.88 154.823 119.225 1 28.55 ? C2D HEC 304 A 1 HETATM 36 C C3D HEC . . . J 7 86.941 153.805 118.837 1 28.55 ? C3D HEC 304 A 1 HETATM 37 C C4D HEC . . . J 7 87.344 153.179 120.059 1 28.55 ? C4D HEC 304 A 1 HETATM 38 C CMD HEC . . . J 7 85.147 155.758 118.254 1 28.55 ? CMD HEC 304 A 1 HETATM 39 C CAD HEC . . . J 7 87.508 153.539 117.444 1 28.55 ? CAD HEC 304 A 1 HETATM 40 C CBD HEC . . . J 7 88.616 154.571 117.32 1 28.55 ? CBD HEC 304 A 1 HETATM 41 C CGD HEC . . . J 7 89.948 153.905 117.477 1 28.55 ? CGD HEC 304 A 1 HETATM 42 O O1D HEC . . . J 7 90.001 152.653 117.414 1 28.55 ? O1D HEC 304 A 1 HETATM 43 O O2D HEC . . . J 7 90.956 154.632 117.661 1 28.55 ? O2D HEC 304 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #