data_6LOE # _model_server_result.job_id MGoBuLMvd8pxQQzFAOjbsA _model_server_result.datetime_utc '2024-11-04 23:21:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6loe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":305}' # _entry.id 6LOE # _exptl.entry_id 6LOE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LOE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N ? 7 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 73 A CYS 73 1_555 J CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 A SG CYS 76 A CYS 76 1_555 J CAC HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale3 A SG CYS 94 A CYS 94 1_555 K CAB HEC . A HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale4 A SG CYS 97 A CYS 97 1_555 K CAC HEC . A HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 A SG CYS 147 A CYS 147 1_555 I CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale6 A SG CYS 150 A CYS 150 1_555 I CAC HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale7 A SG CYS 171 A CYS 171 1_555 H CAB HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale8 A SG CYS 174 A CYS 174 1_555 H CAC HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale9 A SG CYS 221 A CYS 221 1_555 G CAB HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? covale ? covale10 A SG CYS 224 A CYS 224 1_555 G CAC HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale11 B SG CYS 1 B CYS 78 1_555 P C1 EL6 . B EL6 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 sing covale ? covale12 E C ACE 1 E ACE 32 1_555 E N CYS 2 E CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 E SG CYS 2 E CYS 33 1_555 R C1 EL6 . E EL6 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 sing covale ? covale14 E SG CYS 82 E CYS 113 1_555 Q CAB HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale15 E SG CYS 85 E CYS 116 1_555 Q CAC HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc1 A NE2 HIS 63 A HIS 63 1_555 J FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 K FE HEC . A HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc3 A NE2 HIS 77 A HIS 77 1_555 J FE HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc4 A NE2 HIS 98 A HIS 98 1_555 K FE HEC . A HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc5 A NE2 HIS 137 A HIS 137 1_555 I FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc6 A NE2 HIS 140 A HIS 140 1_555 H FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc7 A NE2 HIS 151 A HIS 151 1_555 I FE HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc8 A SD MET 168 A MET 168 1_555 G FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc9 A NE2 HIS 175 A HIS 175 1_555 H FE HEC . A HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc10 A NE2 HIS 225 A HIS 225 1_555 G FE HEC . A HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc11 B SG CYS 692 B CYS 769 1_555 L FE4 SF4 . B SF4 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc12 B SG CYS 695 B CYS 772 1_555 L FE1 SF4 . B SF4 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc13 B SG CYS 698 B CYS 775 1_555 L FE3 SF4 . B SF4 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc14 B SG CYS 702 B CYS 779 1_555 M FE3 SF4 . B SF4 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc15 B SG CYS 747 B CYS 824 1_555 N FE1 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc16 B SG CYS 750 B CYS 827 1_555 N FE4 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc17 B SG CYS 755 B CYS 832 1_555 N FE2 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 sing metalc ? metalc18 B SG CYS 759 B CYS 836 1_555 O FE4 F3S . B F3S 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc19 B SG CYS 779 B CYS 856 1_555 O FE3 F3S . B F3S 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc20 B SG CYS 785 B CYS 862 1_555 O FE1 F3S . B F3S 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc21 B SG CYS 789 B CYS 866 1_555 N FE3 SF4 . B SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc22 B SG CYS 841 B CYS 918 1_555 M FE2 SF4 . B SF4 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc23 B SG CYS 844 B CYS 921 1_555 M FE1 SF4 . B SF4 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc24 B SG CYS 871 B CYS 948 1_555 M FE4 SF4 . B SF4 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc25 B SG CYS 875 B CYS 952 1_555 L FE2 SF4 . B SF4 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 sing metalc ? metalc26 E NE2 HIS 86 E HIS 117 1_555 Q FE HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc27 E SD MET 131 E MET 162 1_555 Q FE HEC . E HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LOE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 HEC A 1 301 301 HEC HEC . H 7 HEC A 1 302 302 HEC HEC . I 7 HEC A 1 303 303 HEC HEC . J 7 HEC A 1 304 304 HEC HEC . K 7 HEC A 1 305 305 HEC HEC . L 8 SF4 B 1 1101 1101 SF4 SF4 . M 8 SF4 B 1 1102 1102 SF4 SF4 . N 8 SF4 B 1 1103 1103 SF4 SF4 . O 9 F3S B 1 1104 1104 F3S F3S . P 10 EL6 B 1 1105 1107 EL6 3PE . Q 7 HEC E 1 201 201 HEC HEC . R 10 EL6 E 1 202 202 EL6 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . K 7 94.879 174.12 129.984 1 20.35 ? FE HEC 305 A 1 HETATM 2 C CHA HEC . . . K 7 97.136 176.659 130.096 1 20.35 ? CHA HEC 305 A 1 HETATM 3 C CHB HEC . . . K 7 96.58 172.749 127.277 1 20.35 ? CHB HEC 305 A 1 HETATM 4 C CHC HEC . . . K 7 92.616 171.567 129.799 1 20.35 ? CHC HEC 305 A 1 HETATM 5 C CHD HEC . . . K 7 93.119 175.445 132.636 1 20.35 ? CHD HEC 305 A 1 HETATM 6 N NA HEC . . . K 7 96.535 174.605 128.881 1 20.35 ? NA HEC 305 A 1 HETATM 7 C C1A HEC . . . K 7 97.333 175.706 129.121 1 20.35 ? C1A HEC 305 A 1 HETATM 8 C C2A HEC . . . K 7 98.416 175.688 128.161 1 20.35 ? C2A HEC 305 A 1 HETATM 9 C C3A HEC . . . K 7 98.268 174.616 127.386 1 20.35 ? C3A HEC 305 A 1 HETATM 10 C C4A HEC . . . K 7 97.081 173.912 127.817 1 20.35 ? C4A HEC 305 A 1 HETATM 11 C CMA HEC . . . K 7 99.196 174.198 126.23 1 20.35 ? CMA HEC 305 A 1 HETATM 12 C CAA HEC . . . K 7 99.547 176.73 128.068 1 20.35 ? CAA HEC 305 A 1 HETATM 13 C CBA HEC . . . K 7 100.605 176.411 129.117 1 20.35 ? CBA HEC 305 A 1 HETATM 14 C CGA HEC . . . K 7 101.408 177.647 129.415 1 20.35 ? CGA HEC 305 A 1 HETATM 15 O O1A HEC . . . K 7 101.034 178.74 128.922 1 20.35 ? O1A HEC 305 A 1 HETATM 16 O O2A HEC . . . K 7 102.419 177.542 130.153 1 20.35 ? O2A HEC 305 A 1 HETATM 17 N NB HEC . . . K 7 94.643 172.486 128.765 1 20.35 ? NB HEC 305 A 1 HETATM 18 C C1B HEC . . . K 7 95.46 172.085 127.725 1 20.35 ? C1B HEC 305 A 1 HETATM 19 C C2B HEC . . . K 7 94.935 170.844 127.198 1 20.35 ? C2B HEC 305 A 1 HETATM 20 C C3B HEC . . . K 7 93.839 170.529 127.885 1 20.35 ? C3B HEC 305 A 1 HETATM 21 C C4B HEC . . . K 7 93.64 171.546 128.889 1 20.35 ? C4B HEC 305 A 1 HETATM 22 C CMB HEC . . . K 7 95.527 170.045 126.024 1 20.35 ? CMB HEC 305 A 1 HETATM 23 C CAB HEC . . . K 7 92.937 169.295 127.688 1 20.35 ? CAB HEC 305 A 1 HETATM 24 C CBB HEC . . . K 7 93.6 168.039 128.282 1 20.35 ? CBB HEC 305 A 1 HETATM 25 N NC HEC . . . K 7 93.197 173.611 131.023 1 20.35 ? NC HEC 305 A 1 HETATM 26 C C1C HEC . . . K 7 92.41 172.51 130.771 1 20.35 ? C1C HEC 305 A 1 HETATM 27 C C2C HEC . . . K 7 91.392 172.431 131.787 1 20.35 ? C2C HEC 305 A 1 HETATM 28 C C3C HEC . . . K 7 91.436 173.565 132.492 1 20.35 ? C3C HEC 305 A 1 HETATM 29 C C4C HEC . . . K 7 92.626 174.287 132.081 1 20.35 ? C4C HEC 305 A 1 HETATM 30 C CMC HEC . . . K 7 90.224 171.427 131.72 1 20.35 ? CMC HEC 305 A 1 HETATM 31 C CAC HEC . . . K 7 90.48 173.981 133.634 1 20.35 ? CAC HEC 305 A 1 HETATM 32 C CBC HEC . . . K 7 90.574 173.044 134.857 1 20.35 ? CBC HEC 305 A 1 HETATM 33 N ND HEC . . . K 7 95.086 175.788 131.171 1 20.35 ? ND HEC 305 A 1 HETATM 34 C C1D HEC . . . K 7 94.245 176.126 132.228 1 20.35 ? C1D HEC 305 A 1 HETATM 35 C C2D HEC . . . K 7 94.743 177.33 132.845 1 20.35 ? C2D HEC 305 A 1 HETATM 36 C C3D HEC . . . K 7 96.001 177.709 132.057 1 20.35 ? C3D HEC 305 A 1 HETATM 37 C C4D HEC . . . K 7 96.133 176.696 131.04 1 20.35 ? C4D HEC 305 A 1 HETATM 38 C CMD HEC . . . K 7 94.127 178.058 134.054 1 20.35 ? CMD HEC 305 A 1 HETATM 39 C CAD HEC . . . K 7 96.944 178.91 132.271 1 20.35 ? CAD HEC 305 A 1 HETATM 40 C CBD HEC . . . K 7 96.198 180.211 132.015 1 20.35 ? CBD HEC 305 A 1 HETATM 41 C CGD HEC . . . K 7 97.154 181.21 131.427 1 20.35 ? CGD HEC 305 A 1 HETATM 42 O O1D HEC . . . K 7 96.771 182.401 131.302 1 20.35 ? O1D HEC 305 A 1 HETATM 43 O O2D HEC . . . K 7 98.296 180.813 131.08 1 20.35 ? O2D HEC 305 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #