data_6LOV # _model_server_result.job_id dV13ei67GmAfW-MlNtQW9w _model_server_result.datetime_utc '2024-12-19 12:03:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6LOV # _exptl.entry_id 6LOV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-dihydroxanthosine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6LOV _cell.length_a 130.53 _cell.length_b 130.53 _cell.length_c 39.737 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LOV _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N4 O6' _chem_comp.formula_weight 284.225 _chem_comp.id 4UO _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-dihydroxanthosine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Xanthosine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C8 4UO doub 1 n y N7 C5 4UO sing 2 n y C8 N9 4UO sing 3 n y O6 C6 4UO doub 4 n n C5 C6 4UO sing 5 n n C5 C4 4UO doub 6 n y C6 N1 4UO sing 7 n n N9 C4 4UO sing 8 n y N9 C1' 4UO sing 9 n n C4 N3 4UO sing 10 n n C1' C2' 4UO sing 11 n n C1' O4' 4UO sing 12 n n O2' C2' 4UO sing 13 n n N1 C2 4UO sing 14 n n C2' C3' 4UO sing 15 n n O4' C4' 4UO sing 16 n n N3 C2 4UO sing 17 n n C2 O2 4UO doub 18 n n C3' C4' 4UO sing 19 n n C3' O3' 4UO sing 20 n n C4' C5' 4UO sing 21 n n O5' C5' 4UO sing 22 n n N1 H1 4UO sing 23 n n N3 H2 4UO sing 24 n n C8 H3 4UO sing 25 n n C1' H4 4UO sing 26 n n C4' H5 4UO sing 27 n n C5' H6 4UO sing 28 n n C5' H7 4UO sing 29 n n O5' H8 4UO sing 30 n n C3' H9 4UO sing 31 n n O3' H10 4UO sing 32 n n C2' H11 4UO sing 33 n n O2' H12 4UO sing 34 n n # _atom_sites.entry_id 6LOV _atom_sites.fract_transf_matrix[1][1] 0.007661 _atom_sites.fract_transf_matrix[1][2] 0.004423 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4UO A 1 301 1 4UO 4UO . C 3 HOH A 1 401 69 HOH HOH . C 3 HOH A 2 402 133 HOH HOH . C 3 HOH A 3 403 117 HOH HOH . C 3 HOH A 4 404 135 HOH HOH . C 3 HOH A 5 405 164 HOH HOH . C 3 HOH A 6 406 104 HOH HOH . C 3 HOH A 7 407 23 HOH HOH . C 3 HOH A 8 408 65 HOH HOH . C 3 HOH A 9 409 158 HOH HOH . C 3 HOH A 10 410 144 HOH HOH . C 3 HOH A 11 411 68 HOH HOH . C 3 HOH A 12 412 28 HOH HOH . C 3 HOH A 13 413 166 HOH HOH . C 3 HOH A 14 414 82 HOH HOH . C 3 HOH A 15 415 40 HOH HOH . C 3 HOH A 16 416 152 HOH HOH . C 3 HOH A 17 417 16 HOH HOH . C 3 HOH A 18 418 83 HOH HOH . C 3 HOH A 19 419 154 HOH HOH . C 3 HOH A 20 420 86 HOH HOH . C 3 HOH A 21 421 95 HOH HOH . C 3 HOH A 22 422 141 HOH HOH . C 3 HOH A 23 423 163 HOH HOH . C 3 HOH A 24 424 199 HOH HOH . C 3 HOH A 25 425 42 HOH HOH . C 3 HOH A 26 426 136 HOH HOH . C 3 HOH A 27 427 32 HOH HOH . C 3 HOH A 28 428 66 HOH HOH . C 3 HOH A 29 429 59 HOH HOH . C 3 HOH A 30 430 128 HOH HOH . C 3 HOH A 31 431 47 HOH HOH . C 3 HOH A 32 432 174 HOH HOH . C 3 HOH A 33 433 124 HOH HOH . C 3 HOH A 34 434 49 HOH HOH . C 3 HOH A 35 435 97 HOH HOH . C 3 HOH A 36 436 57 HOH HOH . C 3 HOH A 37 437 15 HOH HOH . C 3 HOH A 38 438 123 HOH HOH . C 3 HOH A 39 439 177 HOH HOH . C 3 HOH A 40 440 106 HOH HOH . C 3 HOH A 41 441 99 HOH HOH . C 3 HOH A 42 442 159 HOH HOH . C 3 HOH A 43 443 72 HOH HOH . C 3 HOH A 44 444 80 HOH HOH . C 3 HOH A 45 445 11 HOH HOH . C 3 HOH A 46 446 74 HOH HOH . C 3 HOH A 47 447 87 HOH HOH . C 3 HOH A 48 448 139 HOH HOH . C 3 HOH A 49 449 19 HOH HOH . C 3 HOH A 50 450 7 HOH HOH . C 3 HOH A 51 451 44 HOH HOH . C 3 HOH A 52 452 14 HOH HOH . C 3 HOH A 53 453 62 HOH HOH . C 3 HOH A 54 454 98 HOH HOH . C 3 HOH A 55 455 100 HOH HOH . C 3 HOH A 56 456 33 HOH HOH . C 3 HOH A 57 457 45 HOH HOH . C 3 HOH A 58 458 53 HOH HOH . C 3 HOH A 59 459 129 HOH HOH . C 3 HOH A 60 460 155 HOH HOH . C 3 HOH A 61 461 85 HOH HOH . C 3 HOH A 62 462 9 HOH HOH . C 3 HOH A 63 463 91 HOH HOH . C 3 HOH A 64 464 2 HOH HOH . C 3 HOH A 65 465 12 HOH HOH . C 3 HOH A 66 466 4 HOH HOH . C 3 HOH A 67 467 56 HOH HOH . C 3 HOH A 68 468 110 HOH HOH . C 3 HOH A 69 469 130 HOH HOH . C 3 HOH A 70 470 175 HOH HOH . C 3 HOH A 71 471 151 HOH HOH . C 3 HOH A 72 472 102 HOH HOH . C 3 HOH A 73 473 195 HOH HOH . C 3 HOH A 74 474 29 HOH HOH . C 3 HOH A 75 475 20 HOH HOH . C 3 HOH A 76 476 76 HOH HOH . C 3 HOH A 77 477 41 HOH HOH . C 3 HOH A 78 478 156 HOH HOH . C 3 HOH A 79 479 64 HOH HOH . C 3 HOH A 80 480 51 HOH HOH . C 3 HOH A 81 481 149 HOH HOH . C 3 HOH A 82 482 92 HOH HOH . C 3 HOH A 83 483 101 HOH HOH . C 3 HOH A 84 484 103 HOH HOH . C 3 HOH A 85 485 70 HOH HOH . C 3 HOH A 86 486 10 HOH HOH . C 3 HOH A 87 487 201 HOH HOH . C 3 HOH A 88 488 197 HOH HOH . C 3 HOH A 89 489 54 HOH HOH . C 3 HOH A 90 490 71 HOH HOH . C 3 HOH A 91 491 38 HOH HOH . C 3 HOH A 92 492 58 HOH HOH . C 3 HOH A 93 493 90 HOH HOH . C 3 HOH A 94 494 126 HOH HOH . C 3 HOH A 95 495 30 HOH HOH . C 3 HOH A 96 496 6 HOH HOH . C 3 HOH A 97 497 5 HOH HOH . C 3 HOH A 98 498 31 HOH HOH . C 3 HOH A 99 499 142 HOH HOH . C 3 HOH A 100 500 202 HOH HOH . C 3 HOH A 101 501 63 HOH HOH . C 3 HOH A 102 502 140 HOH HOH . C 3 HOH A 103 503 77 HOH HOH . C 3 HOH A 104 504 3 HOH HOH . C 3 HOH A 105 505 121 HOH HOH . C 3 HOH A 106 506 81 HOH HOH . C 3 HOH A 107 507 36 HOH HOH . C 3 HOH A 108 508 145 HOH HOH . C 3 HOH A 109 509 8 HOH HOH . C 3 HOH A 110 510 84 HOH HOH . C 3 HOH A 111 511 35 HOH HOH . C 3 HOH A 112 512 165 HOH HOH . C 3 HOH A 113 513 17 HOH HOH . C 3 HOH A 114 514 168 HOH HOH . C 3 HOH A 115 515 37 HOH HOH . C 3 HOH A 116 516 39 HOH HOH . C 3 HOH A 117 517 153 HOH HOH . C 3 HOH A 118 518 108 HOH HOH . C 3 HOH A 119 519 127 HOH HOH . C 3 HOH A 120 520 193 HOH HOH . C 3 HOH A 121 521 160 HOH HOH . C 3 HOH A 122 522 96 HOH HOH . C 3 HOH A 123 523 67 HOH HOH . C 3 HOH A 124 524 13 HOH HOH . C 3 HOH A 125 525 186 HOH HOH . C 3 HOH A 126 526 25 HOH HOH . C 3 HOH A 127 527 157 HOH HOH . C 3 HOH A 128 528 105 HOH HOH . C 3 HOH A 129 529 181 HOH HOH . C 3 HOH A 130 530 170 HOH HOH . C 3 HOH A 131 531 131 HOH HOH . C 3 HOH A 132 532 172 HOH HOH . C 3 HOH A 133 533 1 HOH HOH . C 3 HOH A 134 534 18 HOH HOH . C 3 HOH A 135 535 167 HOH HOH . C 3 HOH A 136 536 169 HOH HOH . C 3 HOH A 137 537 61 HOH HOH . C 3 HOH A 138 538 50 HOH HOH . C 3 HOH A 139 539 55 HOH HOH . C 3 HOH A 140 540 89 HOH HOH . C 3 HOH A 141 541 48 HOH HOH . C 3 HOH A 142 542 134 HOH HOH . C 3 HOH A 143 543 24 HOH HOH . C 3 HOH A 144 544 22 HOH HOH . C 3 HOH A 145 545 107 HOH HOH . C 3 HOH A 146 546 192 HOH HOH . C 3 HOH A 147 547 34 HOH HOH . C 3 HOH A 148 548 78 HOH HOH . C 3 HOH A 149 549 138 HOH HOH . C 3 HOH A 150 550 118 HOH HOH . C 3 HOH A 151 551 180 HOH HOH . C 3 HOH A 152 552 148 HOH HOH . C 3 HOH A 153 553 88 HOH HOH . C 3 HOH A 154 554 125 HOH HOH . C 3 HOH A 155 555 182 HOH HOH . C 3 HOH A 156 556 188 HOH HOH . C 3 HOH A 157 557 132 HOH HOH . C 3 HOH A 158 558 60 HOH HOH . C 3 HOH A 159 559 21 HOH HOH . C 3 HOH A 160 560 137 HOH HOH . C 3 HOH A 161 561 113 HOH HOH . C 3 HOH A 162 562 112 HOH HOH . C 3 HOH A 163 563 114 HOH HOH . C 3 HOH A 164 564 161 HOH HOH . C 3 HOH A 165 565 119 HOH HOH . C 3 HOH A 166 566 204 HOH HOH . C 3 HOH A 167 567 94 HOH HOH . C 3 HOH A 168 568 179 HOH HOH . C 3 HOH A 169 569 109 HOH HOH . C 3 HOH A 170 570 176 HOH HOH . C 3 HOH A 171 571 206 HOH HOH . C 3 HOH A 172 572 46 HOH HOH . C 3 HOH A 173 573 178 HOH HOH . C 3 HOH A 174 574 115 HOH HOH . C 3 HOH A 175 575 189 HOH HOH . C 3 HOH A 176 576 183 HOH HOH . C 3 HOH A 177 577 73 HOH HOH . C 3 HOH A 178 578 43 HOH HOH . C 3 HOH A 179 579 187 HOH HOH . C 3 HOH A 180 580 184 HOH HOH . C 3 HOH A 181 581 190 HOH HOH . C 3 HOH A 182 582 194 HOH HOH . C 3 HOH A 183 583 171 HOH HOH . C 3 HOH A 184 584 52 HOH HOH . C 3 HOH A 185 585 122 HOH HOH . C 3 HOH A 186 586 27 HOH HOH . C 3 HOH A 187 587 26 HOH HOH . C 3 HOH A 188 588 205 HOH HOH . C 3 HOH A 189 589 116 HOH HOH . C 3 HOH A 190 590 93 HOH HOH . C 3 HOH A 191 591 162 HOH HOH . C 3 HOH A 192 592 75 HOH HOH . C 3 HOH A 193 593 111 HOH HOH . C 3 HOH A 194 594 143 HOH HOH . C 3 HOH A 195 595 146 HOH HOH . C 3 HOH A 196 596 150 HOH HOH . C 3 HOH A 197 597 79 HOH HOH . C 3 HOH A 198 598 120 HOH HOH . C 3 HOH A 199 599 173 HOH HOH . C 3 HOH A 200 600 147 HOH HOH . C 3 HOH A 201 601 185 HOH HOH . C 3 HOH A 202 602 200 HOH HOH . C 3 HOH A 203 603 191 HOH HOH . C 3 HOH A 204 604 196 HOH HOH . C 3 HOH A 205 605 198 HOH HOH . C 3 HOH A 206 606 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 4UO . . . B 2 -18.655 -14.86 -11.808 1 42.01 ? O6 4UO 301 A 1 HETATM 2 C C6 4UO . . . B 2 -17.614 -15.14 -11.416 1 33.66 ? C6 4UO 301 A 1 HETATM 3 N N1 4UO . . . B 2 -16.539 -15.473 -12.308 1 27.73 ? N1 4UO 301 A 1 HETATM 4 C C2 4UO . . . B 2 -15.231 -15.807 -11.793 1 33.46 ? C2 4UO 301 A 1 HETATM 5 O O2 4UO . . . B 2 -14.281 -16.103 -12.45 1 36.93 ? O2 4UO 301 A 1 HETATM 6 N N3 4UO . . . B 2 -15.012 -15.782 -10.381 1 39.94 ? N3 4UO 301 A 1 HETATM 7 C C4 4UO . . . B 2 -16.106 -15.431 -9.478 1 41.68 ? C4 4UO 301 A 1 HETATM 8 C C5 4UO . . . B 2 -17.336 -15.115 -9.914 1 37.04 ? C5 4UO 301 A 1 HETATM 9 N N7 4UO . . . B 2 -18.062 -14.87 -8.825 1 42.87 ? N7 4UO 301 A 1 HETATM 10 C C8 4UO . . . B 2 -17.283 -15.035 -7.745 1 42.32 ? C8 4UO 301 A 1 HETATM 11 N N9 4UO . . . B 2 -16.04 -15.395 -8.165 1 43.37 ? N9 4UO 301 A 1 HETATM 12 C C1' 4UO . . . B 2 -15.244 -15.617 -7.075 1 47.48 ? C1' 4UO 301 A 1 HETATM 13 O O4' 4UO . . . B 2 -14.417 -16.899 -7.444 1 50.77 ? O4' 4UO 301 A 1 HETATM 14 C C4' 4UO . . . B 2 -14.412 -17.759 -6.434 1 49.83 ? C4' 4UO 301 A 1 HETATM 15 C C5' 4UO . . . B 2 -14.438 -19.22 -6.83 1 50.74 ? C5' 4UO 301 A 1 HETATM 16 O O5' 4UO . . . B 2 -13.061 -19.68 -7.077 1 49.78 ? O5' 4UO 301 A 1 HETATM 17 C C3' 4UO . . . B 2 -15.704 -17.331 -5.498 1 50.19 ? C3' 4UO 301 A 1 HETATM 18 O O3' 4UO . . . B 2 -15.406 -17.672 -4.105 1 56.82 ? O3' 4UO 301 A 1 HETATM 19 C C2' 4UO . . . B 2 -15.837 -16.063 -5.656 1 48.5 ? C2' 4UO 301 A 1 HETATM 20 O O2' 4UO . . . B 2 -15.011 -15.334 -4.696 1 40.15 ? O2' 4UO 301 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #