data_6LP0 # _model_server_result.job_id 8GKYuvMy9fZPGONJonALwg _model_server_result.datetime_utc '2024-12-19 14:57:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6LP0 # _exptl.entry_id 6LP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6LP0 _cell.length_a 131.347 _cell.length_b 131.347 _cell.length_c 37.297 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 250 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 250 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.452 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6LP0 _atom_sites.fract_transf_matrix[1][1] 0.007613 _atom_sites.fract_transf_matrix[1][2] 0.004396 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 301 997 AMP AMP . C 3 NAG A 1 302 1 NAG NAG . D 4 HOH A 1 401 139 HOH HOH . D 4 HOH A 2 402 41 HOH HOH . D 4 HOH A 3 403 25 HOH HOH . D 4 HOH A 4 404 126 HOH HOH . D 4 HOH A 5 405 112 HOH HOH . D 4 HOH A 6 406 17 HOH HOH . D 4 HOH A 7 407 134 HOH HOH . D 4 HOH A 8 408 114 HOH HOH . D 4 HOH A 9 409 66 HOH HOH . D 4 HOH A 10 410 105 HOH HOH . D 4 HOH A 11 411 35 HOH HOH . D 4 HOH A 12 412 5 HOH HOH . D 4 HOH A 13 413 120 HOH HOH . D 4 HOH A 14 414 193 HOH HOH . D 4 HOH A 15 415 76 HOH HOH . D 4 HOH A 16 416 90 HOH HOH . D 4 HOH A 17 417 86 HOH HOH . D 4 HOH A 18 418 23 HOH HOH . D 4 HOH A 19 419 136 HOH HOH . D 4 HOH A 20 420 47 HOH HOH . D 4 HOH A 21 421 18 HOH HOH . D 4 HOH A 22 422 156 HOH HOH . D 4 HOH A 23 423 1 HOH HOH . D 4 HOH A 24 424 59 HOH HOH . D 4 HOH A 25 425 180 HOH HOH . D 4 HOH A 26 426 70 HOH HOH . D 4 HOH A 27 427 137 HOH HOH . D 4 HOH A 28 428 119 HOH HOH . D 4 HOH A 29 429 31 HOH HOH . D 4 HOH A 30 430 63 HOH HOH . D 4 HOH A 31 431 95 HOH HOH . D 4 HOH A 32 432 149 HOH HOH . D 4 HOH A 33 433 4 HOH HOH . D 4 HOH A 34 434 38 HOH HOH . D 4 HOH A 35 435 15 HOH HOH . D 4 HOH A 36 436 168 HOH HOH . D 4 HOH A 37 437 179 HOH HOH . D 4 HOH A 38 438 2 HOH HOH . D 4 HOH A 39 439 42 HOH HOH . D 4 HOH A 40 440 132 HOH HOH . D 4 HOH A 41 441 39 HOH HOH . D 4 HOH A 42 442 33 HOH HOH . D 4 HOH A 43 443 200 HOH HOH . D 4 HOH A 44 444 152 HOH HOH . D 4 HOH A 45 445 125 HOH HOH . D 4 HOH A 46 446 171 HOH HOH . D 4 HOH A 47 447 8 HOH HOH . D 4 HOH A 48 448 110 HOH HOH . D 4 HOH A 49 449 197 HOH HOH . D 4 HOH A 50 450 7 HOH HOH . D 4 HOH A 51 451 11 HOH HOH . D 4 HOH A 52 452 84 HOH HOH . D 4 HOH A 53 453 129 HOH HOH . D 4 HOH A 54 454 44 HOH HOH . D 4 HOH A 55 455 85 HOH HOH . D 4 HOH A 56 456 21 HOH HOH . D 4 HOH A 57 457 83 HOH HOH . D 4 HOH A 58 458 9 HOH HOH . D 4 HOH A 59 459 154 HOH HOH . D 4 HOH A 60 460 12 HOH HOH . D 4 HOH A 61 461 173 HOH HOH . D 4 HOH A 62 462 108 HOH HOH . D 4 HOH A 63 463 36 HOH HOH . D 4 HOH A 64 464 46 HOH HOH . D 4 HOH A 65 465 106 HOH HOH . D 4 HOH A 66 466 60 HOH HOH . D 4 HOH A 67 467 48 HOH HOH . D 4 HOH A 68 468 71 HOH HOH . D 4 HOH A 69 469 62 HOH HOH . D 4 HOH A 70 470 164 HOH HOH . D 4 HOH A 71 471 56 HOH HOH . D 4 HOH A 72 472 53 HOH HOH . D 4 HOH A 73 473 104 HOH HOH . D 4 HOH A 74 474 10 HOH HOH . D 4 HOH A 75 475 167 HOH HOH . D 4 HOH A 76 476 175 HOH HOH . D 4 HOH A 77 477 91 HOH HOH . D 4 HOH A 78 478 14 HOH HOH . D 4 HOH A 79 479 77 HOH HOH . D 4 HOH A 80 480 30 HOH HOH . D 4 HOH A 81 481 51 HOH HOH . D 4 HOH A 82 482 40 HOH HOH . D 4 HOH A 83 483 26 HOH HOH . D 4 HOH A 84 484 79 HOH HOH . D 4 HOH A 85 485 93 HOH HOH . D 4 HOH A 86 486 75 HOH HOH . D 4 HOH A 87 487 68 HOH HOH . D 4 HOH A 88 488 121 HOH HOH . D 4 HOH A 89 489 148 HOH HOH . D 4 HOH A 90 490 142 HOH HOH . D 4 HOH A 91 491 69 HOH HOH . D 4 HOH A 92 492 32 HOH HOH . D 4 HOH A 93 493 111 HOH HOH . D 4 HOH A 94 494 88 HOH HOH . D 4 HOH A 95 495 128 HOH HOH . D 4 HOH A 96 496 13 HOH HOH . D 4 HOH A 97 497 89 HOH HOH . D 4 HOH A 98 498 178 HOH HOH . D 4 HOH A 99 499 153 HOH HOH . D 4 HOH A 100 500 72 HOH HOH . D 4 HOH A 101 501 52 HOH HOH . D 4 HOH A 102 502 27 HOH HOH . D 4 HOH A 103 503 182 HOH HOH . D 4 HOH A 104 504 50 HOH HOH . D 4 HOH A 105 505 20 HOH HOH . D 4 HOH A 106 506 22 HOH HOH . D 4 HOH A 107 507 194 HOH HOH . D 4 HOH A 108 508 64 HOH HOH . D 4 HOH A 109 509 54 HOH HOH . D 4 HOH A 110 510 157 HOH HOH . D 4 HOH A 111 511 6 HOH HOH . D 4 HOH A 112 512 160 HOH HOH . D 4 HOH A 113 513 135 HOH HOH . D 4 HOH A 114 514 184 HOH HOH . D 4 HOH A 115 515 34 HOH HOH . D 4 HOH A 116 516 37 HOH HOH . D 4 HOH A 117 517 199 HOH HOH . D 4 HOH A 118 518 43 HOH HOH . D 4 HOH A 119 519 176 HOH HOH . D 4 HOH A 120 520 99 HOH HOH . D 4 HOH A 121 521 151 HOH HOH . D 4 HOH A 122 522 124 HOH HOH . D 4 HOH A 123 523 67 HOH HOH . D 4 HOH A 124 524 65 HOH HOH . D 4 HOH A 125 525 78 HOH HOH . D 4 HOH A 126 526 16 HOH HOH . D 4 HOH A 127 527 155 HOH HOH . D 4 HOH A 128 528 170 HOH HOH . D 4 HOH A 129 529 188 HOH HOH . D 4 HOH A 130 530 130 HOH HOH . D 4 HOH A 131 531 81 HOH HOH . D 4 HOH A 132 532 187 HOH HOH . D 4 HOH A 133 533 57 HOH HOH . D 4 HOH A 134 534 161 HOH HOH . D 4 HOH A 135 535 28 HOH HOH . D 4 HOH A 136 536 87 HOH HOH . D 4 HOH A 137 537 3 HOH HOH . D 4 HOH A 138 538 109 HOH HOH . D 4 HOH A 139 539 80 HOH HOH . D 4 HOH A 140 540 117 HOH HOH . D 4 HOH A 141 541 107 HOH HOH . D 4 HOH A 142 542 19 HOH HOH . D 4 HOH A 143 543 150 HOH HOH . D 4 HOH A 144 544 185 HOH HOH . D 4 HOH A 145 545 103 HOH HOH . D 4 HOH A 146 546 49 HOH HOH . D 4 HOH A 147 547 186 HOH HOH . D 4 HOH A 148 548 74 HOH HOH . D 4 HOH A 149 549 181 HOH HOH . D 4 HOH A 150 550 140 HOH HOH . D 4 HOH A 151 551 73 HOH HOH . D 4 HOH A 152 552 113 HOH HOH . D 4 HOH A 153 553 138 HOH HOH . D 4 HOH A 154 554 189 HOH HOH . D 4 HOH A 155 555 198 HOH HOH . D 4 HOH A 156 556 92 HOH HOH . D 4 HOH A 157 557 24 HOH HOH . D 4 HOH A 158 558 96 HOH HOH . D 4 HOH A 159 559 196 HOH HOH . D 4 HOH A 160 560 118 HOH HOH . D 4 HOH A 161 561 166 HOH HOH . D 4 HOH A 162 562 144 HOH HOH . D 4 HOH A 163 563 45 HOH HOH . D 4 HOH A 164 564 162 HOH HOH . D 4 HOH A 165 565 29 HOH HOH . D 4 HOH A 166 566 174 HOH HOH . D 4 HOH A 167 567 147 HOH HOH . D 4 HOH A 168 568 163 HOH HOH . D 4 HOH A 169 569 82 HOH HOH . D 4 HOH A 170 570 133 HOH HOH . D 4 HOH A 171 571 191 HOH HOH . D 4 HOH A 172 572 159 HOH HOH . D 4 HOH A 173 573 183 HOH HOH . D 4 HOH A 174 574 123 HOH HOH . D 4 HOH A 175 575 102 HOH HOH . D 4 HOH A 176 576 55 HOH HOH . D 4 HOH A 177 577 195 HOH HOH . D 4 HOH A 178 578 143 HOH HOH . D 4 HOH A 179 579 192 HOH HOH . D 4 HOH A 180 580 145 HOH HOH . D 4 HOH A 181 581 127 HOH HOH . D 4 HOH A 182 582 141 HOH HOH . D 4 HOH A 183 583 146 HOH HOH . D 4 HOH A 184 584 116 HOH HOH . D 4 HOH A 185 585 58 HOH HOH . D 4 HOH A 186 586 115 HOH HOH . D 4 HOH A 187 587 94 HOH HOH . D 4 HOH A 188 588 98 HOH HOH . D 4 HOH A 189 589 100 HOH HOH . D 4 HOH A 190 590 169 HOH HOH . D 4 HOH A 191 591 158 HOH HOH . D 4 HOH A 192 592 177 HOH HOH . D 4 HOH A 193 593 190 HOH HOH . D 4 HOH A 194 594 97 HOH HOH . D 4 HOH A 195 595 122 HOH HOH . D 4 HOH A 196 596 202 HOH HOH . D 4 HOH A 197 597 172 HOH HOH . D 4 HOH A 198 598 131 HOH HOH . D 4 HOH A 199 599 201 HOH HOH . D 4 HOH A 200 600 61 HOH HOH . D 4 HOH A 201 601 165 HOH HOH . D 4 HOH A 202 602 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 21.231 7.213 -11.213 0.32 39.48 ? P AMP 301 A 1 HETATM 2 O O1P AMP . . . B 2 21.782 6.836 -12.52 0 157.09 ? O1P AMP 301 A 1 HETATM 3 O O2P AMP . . . B 2 19.992 6.382 -11.119 0.39 37.73 ? O2P AMP 301 A 1 HETATM 4 O O3P AMP . . . B 2 20.869 8.686 -11.128 0.68 30.5 ? O3P AMP 301 A 1 HETATM 5 O O5' AMP . . . B 2 22.286 6.831 -10.113 1 39.31 ? O5' AMP 301 A 1 HETATM 6 C C5' AMP . . . B 2 21.969 6.858 -8.72 1 42.52 ? C5' AMP 301 A 1 HETATM 7 C C4' AMP . . . B 2 21.912 8.341 -8.13 1 38.45 ? C4' AMP 301 A 1 HETATM 8 O O4' AMP . . . B 2 20.985 8.406 -7.194 1 39.83 ? O4' AMP 301 A 1 HETATM 9 C C3' AMP . . . B 2 23.163 8.763 -7.429 1 40.3 ? C3' AMP 301 A 1 HETATM 10 O O3' AMP . . . B 2 23.541 9.983 -7.916 1 43.54 ? O3' AMP 301 A 1 HETATM 11 C C2' AMP . . . B 2 22.821 8.843 -5.888 1 39.86 ? C2' AMP 301 A 1 HETATM 12 O O2' AMP . . . B 2 23.378 10.146 -5.335 1 44.66 ? O2' AMP 301 A 1 HETATM 13 C C1' AMP . . . B 2 21.548 8.717 -5.708 1 33.87 ? C1' AMP 301 A 1 HETATM 14 N N9 AMP . . . B 2 21.247 7.545 -4.846 1 23.9 ? N9 AMP 301 A 1 HETATM 15 C C8 AMP . . . B 2 20.686 6.41 -5.289 1 21.65 ? C8 AMP 301 A 1 HETATM 16 N N7 AMP . . . B 2 20.597 5.512 -4.264 1 19.82 ? N7 AMP 301 A 1 HETATM 17 C C5 AMP . . . B 2 21.117 6.122 -3.149 1 18.76 ? C5 AMP 301 A 1 HETATM 18 C C6 AMP . . . B 2 21.286 5.647 -1.846 1 18.45 ? C6 AMP 301 A 1 HETATM 19 N N6 AMP . . . B 2 20.965 4.412 -1.311 1 19.12 ? N6 AMP 301 A 1 HETATM 20 N N1 AMP . . . B 2 21.81 6.455 -0.922 1 17.39 ? N1 AMP 301 A 1 HETATM 21 C C2 AMP . . . B 2 22.201 7.702 -1.285 1 17.72 ? C2 AMP 301 A 1 HETATM 22 N N3 AMP . . . B 2 22.062 8.175 -2.563 1 19.47 ? N3 AMP 301 A 1 HETATM 23 C C4 AMP . . . B 2 21.526 7.369 -3.491 1 20.61 ? C4 AMP 301 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #