data_6LP0 # _model_server_result.job_id iplG22YnFPtcGCi9FaQniQ _model_server_result.datetime_utc '2024-12-19 15:10:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6LP0 # _exptl.entry_id 6LP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6LP0 _cell.length_a 131.347 _cell.length_b 131.347 _cell.length_c 37.297 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 250 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 250 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NAG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NAG _struct_conn.ptnr2_auth_seq_id 302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.452 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 263 n n C1 O1 NAG sing 264 n n C1 O5 NAG sing 265 n n C1 H1 NAG sing 266 n n C2 C3 NAG sing 267 n n C2 N2 NAG sing 268 n n C2 H2 NAG sing 269 n n C3 C4 NAG sing 270 n n C3 O3 NAG sing 271 n n C3 H3 NAG sing 272 n n C4 C5 NAG sing 273 n n C4 O4 NAG sing 274 n n C4 H4 NAG sing 275 n n C5 C6 NAG sing 276 n n C5 O5 NAG sing 277 n n C5 H5 NAG sing 278 n n C6 O6 NAG sing 279 n n C6 H61 NAG sing 280 n n C6 H62 NAG sing 281 n n C7 C8 NAG sing 282 n n C7 N2 NAG sing 283 n n C7 O7 NAG doub 284 n n C8 H81 NAG sing 285 n n C8 H82 NAG sing 286 n n C8 H83 NAG sing 287 n n N2 HN2 NAG sing 288 n n O1 HO1 NAG sing 289 n n O3 HO3 NAG sing 290 n n O4 HO4 NAG sing 291 n n O6 HO6 NAG sing 292 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6LP0 _atom_sites.fract_transf_matrix[1][1] 0.007613 _atom_sites.fract_transf_matrix[1][2] 0.004396 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 301 997 AMP AMP . C 3 NAG A 1 302 1 NAG NAG . D 4 HOH A 1 401 139 HOH HOH . D 4 HOH A 2 402 41 HOH HOH . D 4 HOH A 3 403 25 HOH HOH . D 4 HOH A 4 404 126 HOH HOH . D 4 HOH A 5 405 112 HOH HOH . D 4 HOH A 6 406 17 HOH HOH . D 4 HOH A 7 407 134 HOH HOH . D 4 HOH A 8 408 114 HOH HOH . D 4 HOH A 9 409 66 HOH HOH . D 4 HOH A 10 410 105 HOH HOH . D 4 HOH A 11 411 35 HOH HOH . D 4 HOH A 12 412 5 HOH HOH . D 4 HOH A 13 413 120 HOH HOH . D 4 HOH A 14 414 193 HOH HOH . D 4 HOH A 15 415 76 HOH HOH . D 4 HOH A 16 416 90 HOH HOH . D 4 HOH A 17 417 86 HOH HOH . D 4 HOH A 18 418 23 HOH HOH . D 4 HOH A 19 419 136 HOH HOH . D 4 HOH A 20 420 47 HOH HOH . D 4 HOH A 21 421 18 HOH HOH . D 4 HOH A 22 422 156 HOH HOH . D 4 HOH A 23 423 1 HOH HOH . D 4 HOH A 24 424 59 HOH HOH . D 4 HOH A 25 425 180 HOH HOH . D 4 HOH A 26 426 70 HOH HOH . D 4 HOH A 27 427 137 HOH HOH . D 4 HOH A 28 428 119 HOH HOH . D 4 HOH A 29 429 31 HOH HOH . D 4 HOH A 30 430 63 HOH HOH . D 4 HOH A 31 431 95 HOH HOH . D 4 HOH A 32 432 149 HOH HOH . D 4 HOH A 33 433 4 HOH HOH . D 4 HOH A 34 434 38 HOH HOH . D 4 HOH A 35 435 15 HOH HOH . D 4 HOH A 36 436 168 HOH HOH . D 4 HOH A 37 437 179 HOH HOH . D 4 HOH A 38 438 2 HOH HOH . D 4 HOH A 39 439 42 HOH HOH . D 4 HOH A 40 440 132 HOH HOH . D 4 HOH A 41 441 39 HOH HOH . D 4 HOH A 42 442 33 HOH HOH . D 4 HOH A 43 443 200 HOH HOH . D 4 HOH A 44 444 152 HOH HOH . D 4 HOH A 45 445 125 HOH HOH . D 4 HOH A 46 446 171 HOH HOH . D 4 HOH A 47 447 8 HOH HOH . D 4 HOH A 48 448 110 HOH HOH . D 4 HOH A 49 449 197 HOH HOH . D 4 HOH A 50 450 7 HOH HOH . D 4 HOH A 51 451 11 HOH HOH . D 4 HOH A 52 452 84 HOH HOH . D 4 HOH A 53 453 129 HOH HOH . D 4 HOH A 54 454 44 HOH HOH . D 4 HOH A 55 455 85 HOH HOH . D 4 HOH A 56 456 21 HOH HOH . D 4 HOH A 57 457 83 HOH HOH . D 4 HOH A 58 458 9 HOH HOH . D 4 HOH A 59 459 154 HOH HOH . D 4 HOH A 60 460 12 HOH HOH . D 4 HOH A 61 461 173 HOH HOH . D 4 HOH A 62 462 108 HOH HOH . D 4 HOH A 63 463 36 HOH HOH . D 4 HOH A 64 464 46 HOH HOH . D 4 HOH A 65 465 106 HOH HOH . D 4 HOH A 66 466 60 HOH HOH . D 4 HOH A 67 467 48 HOH HOH . D 4 HOH A 68 468 71 HOH HOH . D 4 HOH A 69 469 62 HOH HOH . D 4 HOH A 70 470 164 HOH HOH . D 4 HOH A 71 471 56 HOH HOH . D 4 HOH A 72 472 53 HOH HOH . D 4 HOH A 73 473 104 HOH HOH . D 4 HOH A 74 474 10 HOH HOH . D 4 HOH A 75 475 167 HOH HOH . D 4 HOH A 76 476 175 HOH HOH . D 4 HOH A 77 477 91 HOH HOH . D 4 HOH A 78 478 14 HOH HOH . D 4 HOH A 79 479 77 HOH HOH . D 4 HOH A 80 480 30 HOH HOH . D 4 HOH A 81 481 51 HOH HOH . D 4 HOH A 82 482 40 HOH HOH . D 4 HOH A 83 483 26 HOH HOH . D 4 HOH A 84 484 79 HOH HOH . D 4 HOH A 85 485 93 HOH HOH . D 4 HOH A 86 486 75 HOH HOH . D 4 HOH A 87 487 68 HOH HOH . D 4 HOH A 88 488 121 HOH HOH . D 4 HOH A 89 489 148 HOH HOH . D 4 HOH A 90 490 142 HOH HOH . D 4 HOH A 91 491 69 HOH HOH . D 4 HOH A 92 492 32 HOH HOH . D 4 HOH A 93 493 111 HOH HOH . D 4 HOH A 94 494 88 HOH HOH . D 4 HOH A 95 495 128 HOH HOH . D 4 HOH A 96 496 13 HOH HOH . D 4 HOH A 97 497 89 HOH HOH . D 4 HOH A 98 498 178 HOH HOH . D 4 HOH A 99 499 153 HOH HOH . D 4 HOH A 100 500 72 HOH HOH . D 4 HOH A 101 501 52 HOH HOH . D 4 HOH A 102 502 27 HOH HOH . D 4 HOH A 103 503 182 HOH HOH . D 4 HOH A 104 504 50 HOH HOH . D 4 HOH A 105 505 20 HOH HOH . D 4 HOH A 106 506 22 HOH HOH . D 4 HOH A 107 507 194 HOH HOH . D 4 HOH A 108 508 64 HOH HOH . D 4 HOH A 109 509 54 HOH HOH . D 4 HOH A 110 510 157 HOH HOH . D 4 HOH A 111 511 6 HOH HOH . D 4 HOH A 112 512 160 HOH HOH . D 4 HOH A 113 513 135 HOH HOH . D 4 HOH A 114 514 184 HOH HOH . D 4 HOH A 115 515 34 HOH HOH . D 4 HOH A 116 516 37 HOH HOH . D 4 HOH A 117 517 199 HOH HOH . D 4 HOH A 118 518 43 HOH HOH . D 4 HOH A 119 519 176 HOH HOH . D 4 HOH A 120 520 99 HOH HOH . D 4 HOH A 121 521 151 HOH HOH . D 4 HOH A 122 522 124 HOH HOH . D 4 HOH A 123 523 67 HOH HOH . D 4 HOH A 124 524 65 HOH HOH . D 4 HOH A 125 525 78 HOH HOH . D 4 HOH A 126 526 16 HOH HOH . D 4 HOH A 127 527 155 HOH HOH . D 4 HOH A 128 528 170 HOH HOH . D 4 HOH A 129 529 188 HOH HOH . D 4 HOH A 130 530 130 HOH HOH . D 4 HOH A 131 531 81 HOH HOH . D 4 HOH A 132 532 187 HOH HOH . D 4 HOH A 133 533 57 HOH HOH . D 4 HOH A 134 534 161 HOH HOH . D 4 HOH A 135 535 28 HOH HOH . D 4 HOH A 136 536 87 HOH HOH . D 4 HOH A 137 537 3 HOH HOH . D 4 HOH A 138 538 109 HOH HOH . D 4 HOH A 139 539 80 HOH HOH . D 4 HOH A 140 540 117 HOH HOH . D 4 HOH A 141 541 107 HOH HOH . D 4 HOH A 142 542 19 HOH HOH . D 4 HOH A 143 543 150 HOH HOH . D 4 HOH A 144 544 185 HOH HOH . D 4 HOH A 145 545 103 HOH HOH . D 4 HOH A 146 546 49 HOH HOH . D 4 HOH A 147 547 186 HOH HOH . D 4 HOH A 148 548 74 HOH HOH . D 4 HOH A 149 549 181 HOH HOH . D 4 HOH A 150 550 140 HOH HOH . D 4 HOH A 151 551 73 HOH HOH . D 4 HOH A 152 552 113 HOH HOH . D 4 HOH A 153 553 138 HOH HOH . D 4 HOH A 154 554 189 HOH HOH . D 4 HOH A 155 555 198 HOH HOH . D 4 HOH A 156 556 92 HOH HOH . D 4 HOH A 157 557 24 HOH HOH . D 4 HOH A 158 558 96 HOH HOH . D 4 HOH A 159 559 196 HOH HOH . D 4 HOH A 160 560 118 HOH HOH . D 4 HOH A 161 561 166 HOH HOH . D 4 HOH A 162 562 144 HOH HOH . D 4 HOH A 163 563 45 HOH HOH . D 4 HOH A 164 564 162 HOH HOH . D 4 HOH A 165 565 29 HOH HOH . D 4 HOH A 166 566 174 HOH HOH . D 4 HOH A 167 567 147 HOH HOH . D 4 HOH A 168 568 163 HOH HOH . D 4 HOH A 169 569 82 HOH HOH . D 4 HOH A 170 570 133 HOH HOH . D 4 HOH A 171 571 191 HOH HOH . D 4 HOH A 172 572 159 HOH HOH . D 4 HOH A 173 573 183 HOH HOH . D 4 HOH A 174 574 123 HOH HOH . D 4 HOH A 175 575 102 HOH HOH . D 4 HOH A 176 576 55 HOH HOH . D 4 HOH A 177 577 195 HOH HOH . D 4 HOH A 178 578 143 HOH HOH . D 4 HOH A 179 579 192 HOH HOH . D 4 HOH A 180 580 145 HOH HOH . D 4 HOH A 181 581 127 HOH HOH . D 4 HOH A 182 582 141 HOH HOH . D 4 HOH A 183 583 146 HOH HOH . D 4 HOH A 184 584 116 HOH HOH . D 4 HOH A 185 585 58 HOH HOH . D 4 HOH A 186 586 115 HOH HOH . D 4 HOH A 187 587 94 HOH HOH . D 4 HOH A 188 588 98 HOH HOH . D 4 HOH A 189 589 100 HOH HOH . D 4 HOH A 190 590 169 HOH HOH . D 4 HOH A 191 591 158 HOH HOH . D 4 HOH A 192 592 177 HOH HOH . D 4 HOH A 193 593 190 HOH HOH . D 4 HOH A 194 594 97 HOH HOH . D 4 HOH A 195 595 122 HOH HOH . D 4 HOH A 196 596 202 HOH HOH . D 4 HOH A 197 597 172 HOH HOH . D 4 HOH A 198 598 131 HOH HOH . D 4 HOH A 199 599 201 HOH HOH . D 4 HOH A 200 600 61 HOH HOH . D 4 HOH A 201 601 165 HOH HOH . D 4 HOH A 202 602 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 32.14 30.358 -16.864 1 26.85 ? C1 NAG 302 A 1 HETATM 2 C C2 NAG . . . C 3 31.888 30.801 -18.304 1 30.17 ? C2 NAG 302 A 1 HETATM 3 C C3 NAG . . . C 3 31.023 32.055 -18.369 1 31.83 ? C3 NAG 302 A 1 HETATM 4 C C4 NAG . . . C 3 29.782 31.932 -17.491 1 31.74 ? C4 NAG 302 A 1 HETATM 5 C C5 NAG . . . C 3 30.158 31.43 -16.103 1 30.03 ? C5 NAG 302 A 1 HETATM 6 C C6 NAG . . . C 3 28.977 31.225 -15.155 1 31.26 ? C6 NAG 302 A 1 HETATM 7 C C7 NAG . . . C 3 33.498 30.301 -20.063 1 37.66 ? C7 NAG 302 A 1 HETATM 8 C C8 NAG . . . C 3 34.795 30.689 -20.708 1 38.67 ? C8 NAG 302 A 1 HETATM 9 N N2 NAG . . . C 3 33.15 31.02 -18.994 1 33.6 ? N2 NAG 302 A 1 HETATM 10 O O3 NAG . . . C 3 30.598 32.283 -19.718 1 33.82 ? O3 NAG 302 A 1 HETATM 11 O O4 NAG . . . C 3 29.171 33.216 -17.402 1 34.86 ? O4 NAG 302 A 1 HETATM 12 O O5 NAG . . . C 3 30.86 30.196 -16.251 1 27.06 ? O5 NAG 302 A 1 HETATM 13 O O6 NAG . . . C 3 28.174 30.125 -15.584 1 32.67 ? O6 NAG 302 A 1 HETATM 14 O O7 NAG . . . C 3 32.811 29.385 -20.509 1 42.37 ? O7 NAG 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #