data_6LPK # _model_server_result.job_id ECok1uzTOWvfF2LyGa9nSw _model_server_result.datetime_utc '2024-11-05 06:52:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2404}' # _entry.id 6LPK # _exptl.entry_id 6LPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LPK _cell.length_a 40.5 _cell.length_b 179.2 _cell.length_c 142.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 C NA NA . A NA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 C NA NA . A NA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc3 C NA NA . A NA 2402 1_555 CA O HOH . A HOH 2522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 C NA NA . A NA 2402 1_555 CA O HOH . A HOH 2546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc5 C NA NA . A NA 2402 1_555 CA O HOH . A HOH 2579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 125 n n C1 C10 CLR sing 126 n n C1 H11 CLR sing 127 n n C1 H12 CLR sing 128 n n C2 C3 CLR sing 129 n n C2 H21 CLR sing 130 n n C2 H22 CLR sing 131 n n C3 C4 CLR sing 132 n n C3 O1 CLR sing 133 n n C3 H3 CLR sing 134 n n C4 C5 CLR sing 135 n n C4 H41 CLR sing 136 n n C4 H42 CLR sing 137 n n C5 C6 CLR doub 138 n n C5 C10 CLR sing 139 n n C6 C7 CLR sing 140 n n C6 H6 CLR sing 141 n n C7 C8 CLR sing 142 n n C7 H71 CLR sing 143 n n C7 H72 CLR sing 144 n n C8 C9 CLR sing 145 n n C8 C14 CLR sing 146 n n C8 H8 CLR sing 147 n n C9 C10 CLR sing 148 n n C9 C11 CLR sing 149 n n C9 H9 CLR sing 150 n n C10 C19 CLR sing 151 n n C11 C12 CLR sing 152 n n C11 H111 CLR sing 153 n n C11 H112 CLR sing 154 n n C12 C13 CLR sing 155 n n C12 H121 CLR sing 156 n n C12 H122 CLR sing 157 n n C13 C14 CLR sing 158 n n C13 C17 CLR sing 159 n n C13 C18 CLR sing 160 n n C14 C15 CLR sing 161 n n C14 H14 CLR sing 162 n n C15 C16 CLR sing 163 n n C15 H151 CLR sing 164 n n C15 H152 CLR sing 165 n n C16 C17 CLR sing 166 n n C16 H161 CLR sing 167 n n C16 H162 CLR sing 168 n n C17 C20 CLR sing 169 n n C17 H17 CLR sing 170 n n C18 H181 CLR sing 171 n n C18 H182 CLR sing 172 n n C18 H183 CLR sing 173 n n C19 H191 CLR sing 174 n n C19 H192 CLR sing 175 n n C19 H193 CLR sing 176 n n C20 C21 CLR sing 177 n n C20 C22 CLR sing 178 n n C20 H20 CLR sing 179 n n C21 H211 CLR sing 180 n n C21 H212 CLR sing 181 n n C21 H213 CLR sing 182 n n C22 C23 CLR sing 183 n n C22 H221 CLR sing 184 n n C22 H222 CLR sing 185 n n C23 C24 CLR sing 186 n n C23 H231 CLR sing 187 n n C23 H232 CLR sing 188 n n C24 C25 CLR sing 189 n n C24 H241 CLR sing 190 n n C24 H242 CLR sing 191 n n C25 C26 CLR sing 192 n n C25 C27 CLR sing 193 n n C25 H25 CLR sing 194 n n C26 H261 CLR sing 195 n n C26 H262 CLR sing 196 n n C26 H263 CLR sing 197 n n C27 H271 CLR sing 198 n n C27 H272 CLR sing 199 n n C27 H273 CLR sing 200 n n O1 H1 CLR sing 201 n n # _atom_sites.entry_id 6LPK _atom_sites.fract_transf_matrix[1][1] 0.024691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZMA A 1 2401 2401 ZMA ZMA . C 3 NA A 1 2402 2402 NA NA . D 4 CLR A 1 2403 2403 CLR CLR . E 4 CLR A 1 2404 2404 CLR CLR . F 4 CLR A 1 2405 2405 CLR CLR . G 5 D12 A 1 2406 2406 D12 D12 . H 6 MYS A 1 2407 2407 MYS MYS . I 7 HEX A 1 2408 2408 HEX HEX . J 6 MYS A 1 2409 2409 MYS MYS . K 8 8K6 A 1 2410 2410 8K6 8K6 . L 9 D10 A 1 2411 2411 D10 D10 . M 10 OCT A 1 2412 2412 OCT OCT . N 10 OCT A 1 2413 2413 OCT OCT . O 6 MYS A 1 2414 2414 MYS MYS . P 11 UND A 1 2415 2415 UND UND . Q 12 ER0 A 1 2416 2416 ER0 ER0 . R 6 MYS A 1 2417 2417 MYS MYS . S 8 8K6 A 1 2418 2418 8K6 8K6 . T 8 8K6 A 1 2419 2419 8K6 8K6 . U 13 TRD A 1 2420 2420 TRD TRD . V 10 OCT A 1 2421 2422 OCT OCT . W 13 TRD A 1 2422 2423 TRD TRD . X 12 ER0 A 1 2423 2424 ER0 ER0 . Y 6 MYS A 1 2424 2425 MYS MYS . Z 13 TRD A 1 2425 2426 TRD TRD . AA 6 MYS A 1 2426 2427 MYS MYS . BA 13 TRD A 1 2427 2428 TRD TRD . CA 14 HOH A 1 2501 2681 HOH HOH . CA 14 HOH A 2 2502 2505 HOH HOH . CA 14 HOH A 3 2503 2689 HOH HOH . CA 14 HOH A 4 2504 2658 HOH HOH . CA 14 HOH A 5 2505 2603 HOH HOH . CA 14 HOH A 6 2506 2594 HOH HOH . CA 14 HOH A 7 2507 2512 HOH HOH . CA 14 HOH A 8 2508 2575 HOH HOH . CA 14 HOH A 9 2509 2508 HOH HOH . CA 14 HOH A 10 2510 2604 HOH HOH . CA 14 HOH A 11 2511 2597 HOH HOH . CA 14 HOH A 12 2512 2548 HOH HOH . CA 14 HOH A 13 2513 2536 HOH HOH . CA 14 HOH A 14 2514 2530 HOH HOH . CA 14 HOH A 15 2515 2585 HOH HOH . CA 14 HOH A 16 2516 2678 HOH HOH . CA 14 HOH A 17 2517 2521 HOH HOH . CA 14 HOH A 18 2518 2596 HOH HOH . CA 14 HOH A 19 2519 2528 HOH HOH . CA 14 HOH A 20 2520 2517 HOH HOH . CA 14 HOH A 21 2521 2573 HOH HOH . CA 14 HOH A 22 2522 2529 HOH HOH . CA 14 HOH A 23 2523 2562 HOH HOH . CA 14 HOH A 24 2524 2563 HOH HOH . CA 14 HOH A 25 2525 2558 HOH HOH . CA 14 HOH A 26 2526 2641 HOH HOH . CA 14 HOH A 27 2527 2534 HOH HOH . CA 14 HOH A 28 2528 2654 HOH HOH . CA 14 HOH A 29 2529 2643 HOH HOH . CA 14 HOH A 30 2530 2567 HOH HOH . CA 14 HOH A 31 2531 2513 HOH HOH . CA 14 HOH A 32 2532 2520 HOH HOH . CA 14 HOH A 33 2533 2684 HOH HOH . CA 14 HOH A 34 2534 2615 HOH HOH . CA 14 HOH A 35 2535 2554 HOH HOH . CA 14 HOH A 36 2536 2532 HOH HOH . CA 14 HOH A 37 2537 2533 HOH HOH . CA 14 HOH A 38 2538 2542 HOH HOH . CA 14 HOH A 39 2539 2561 HOH HOH . CA 14 HOH A 40 2540 2516 HOH HOH . CA 14 HOH A 41 2541 2613 HOH HOH . CA 14 HOH A 42 2542 2514 HOH HOH . CA 14 HOH A 43 2543 2583 HOH HOH . CA 14 HOH A 44 2544 2511 HOH HOH . CA 14 HOH A 45 2545 2519 HOH HOH . CA 14 HOH A 46 2546 2552 HOH HOH . CA 14 HOH A 47 2547 2518 HOH HOH . CA 14 HOH A 48 2548 2515 HOH HOH . CA 14 HOH A 49 2549 2522 HOH HOH . CA 14 HOH A 50 2550 2629 HOH HOH . CA 14 HOH A 51 2551 2531 HOH HOH . CA 14 HOH A 52 2552 2527 HOH HOH . CA 14 HOH A 53 2553 2526 HOH HOH . CA 14 HOH A 54 2554 2535 HOH HOH . CA 14 HOH A 55 2555 2601 HOH HOH . CA 14 HOH A 56 2556 2668 HOH HOH . CA 14 HOH A 57 2557 2578 HOH HOH . CA 14 HOH A 58 2558 2637 HOH HOH . CA 14 HOH A 59 2559 2666 HOH HOH . CA 14 HOH A 60 2560 2638 HOH HOH . CA 14 HOH A 61 2561 2543 HOH HOH . CA 14 HOH A 62 2562 2639 HOH HOH . CA 14 HOH A 63 2563 2608 HOH HOH . CA 14 HOH A 64 2564 2572 HOH HOH . CA 14 HOH A 65 2565 2664 HOH HOH . CA 14 HOH A 66 2566 2524 HOH HOH . CA 14 HOH A 67 2567 2620 HOH HOH . CA 14 HOH A 68 2568 2523 HOH HOH . CA 14 HOH A 69 2569 2541 HOH HOH . CA 14 HOH A 70 2570 2559 HOH HOH . CA 14 HOH A 71 2571 2679 HOH HOH . CA 14 HOH A 72 2572 2553 HOH HOH . CA 14 HOH A 73 2573 2525 HOH HOH . CA 14 HOH A 74 2574 2546 HOH HOH . CA 14 HOH A 75 2575 2564 HOH HOH . CA 14 HOH A 76 2576 2560 HOH HOH . CA 14 HOH A 77 2577 2570 HOH HOH . CA 14 HOH A 78 2578 2566 HOH HOH . CA 14 HOH A 79 2579 2579 HOH HOH . CA 14 HOH A 80 2580 2616 HOH HOH . CA 14 HOH A 81 2581 2569 HOH HOH . CA 14 HOH A 82 2582 2577 HOH HOH . CA 14 HOH A 83 2583 2557 HOH HOH . CA 14 HOH A 84 2584 2676 HOH HOH . CA 14 HOH A 85 2585 2609 HOH HOH . CA 14 HOH A 86 2586 2539 HOH HOH . CA 14 HOH A 87 2587 2550 HOH HOH . CA 14 HOH A 88 2588 2683 HOH HOH . CA 14 HOH A 89 2589 2547 HOH HOH . CA 14 HOH A 90 2590 2576 HOH HOH . CA 14 HOH A 91 2591 2685 HOH HOH . CA 14 HOH A 92 2592 2686 HOH HOH . CA 14 HOH A 93 2593 2556 HOH HOH . CA 14 HOH A 94 2594 2537 HOH HOH . CA 14 HOH A 95 2595 2581 HOH HOH . CA 14 HOH A 96 2596 2618 HOH HOH . CA 14 HOH A 97 2597 2510 HOH HOH . CA 14 HOH A 98 2598 2574 HOH HOH . CA 14 HOH A 99 2599 2688 HOH HOH . CA 14 HOH A 100 2600 2625 HOH HOH . CA 14 HOH A 101 2601 2680 HOH HOH . CA 14 HOH A 102 2602 2607 HOH HOH . CA 14 HOH A 103 2603 2645 HOH HOH . CA 14 HOH A 104 2604 2589 HOH HOH . CA 14 HOH A 105 2605 2584 HOH HOH . CA 14 HOH A 106 2606 2592 HOH HOH . CA 14 HOH A 107 2607 2538 HOH HOH . CA 14 HOH A 108 2608 2545 HOH HOH . CA 14 HOH A 109 2609 2655 HOH HOH . CA 14 HOH A 110 2610 2652 HOH HOH . CA 14 HOH A 111 2611 2621 HOH HOH . CA 14 HOH A 112 2612 2507 HOH HOH . CA 14 HOH A 113 2613 2677 HOH HOH . CA 14 HOH A 114 2614 2614 HOH HOH . CA 14 HOH A 115 2615 2591 HOH HOH . CA 14 HOH A 116 2616 2687 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . E 4 11.933 10.578 14.322 1 50.71 ? C1 CLR 2404 A 1 HETATM 2 C C2 CLR . . . E 4 11.941 12.1 14.454 1 50.53 ? C2 CLR 2404 A 1 HETATM 3 C C3 CLR . . . E 4 13.277 12.666 14.036 1 50 ? C3 CLR 2404 A 1 HETATM 4 C C4 CLR . . . E 4 13.505 12.321 12.585 1 47.86 ? C4 CLR 2404 A 1 HETATM 5 C C5 CLR . . . E 4 13.537 10.82 12.408 1 50.62 ? C5 CLR 2404 A 1 HETATM 6 C C6 CLR . . . E 4 14.561 10.215 11.826 1 49.54 ? C6 CLR 2404 A 1 HETATM 7 C C7 CLR . . . E 4 14.61 8.765 11.48 1 54.07 ? C7 CLR 2404 A 1 HETATM 8 C C8 CLR . . . E 4 13.281 8.038 11.703 1 50.88 ? C8 CLR 2404 A 1 HETATM 9 C C9 CLR . . . E 4 12.641 8.545 13.006 1 44.62 ? C9 CLR 2404 A 1 HETATM 10 C C10 CLR . . . E 4 12.319 10.062 12.917 1 46.49 ? C10 CLR 2404 A 1 HETATM 11 C C11 CLR . . . E 4 11.441 7.691 13.431 1 47.3 ? C11 CLR 2404 A 1 HETATM 12 C C12 CLR . . . E 4 11.613 6.17 13.301 1 46.65 ? C12 CLR 2404 A 1 HETATM 13 C C13 CLR . . . E 4 12.17 5.732 11.951 1 46.28 ? C13 CLR 2404 A 1 HETATM 14 C C14 CLR . . . E 4 13.48 6.53 11.788 1 51.73 ? C14 CLR 2404 A 1 HETATM 15 C C15 CLR . . . E 4 14.253 5.816 10.68 1 52.17 ? C15 CLR 2404 A 1 HETATM 16 C C16 CLR . . . E 4 13.714 4.366 10.681 1 50.71 ? C16 CLR 2404 A 1 HETATM 17 C C17 CLR . . . E 4 12.691 4.27 11.845 1 49.02 ? C17 CLR 2404 A 1 HETATM 18 C C18 CLR . . . E 4 11.195 6.001 10.8 1 50.15 ? C18 CLR 2404 A 1 HETATM 19 C C19 CLR . . . E 4 11.205 10.354 11.9 1 52.13 ? C19 CLR 2404 A 1 HETATM 20 C C20 CLR . . . E 4 11.692 3.104 11.658 1 51.11 ? C20 CLR 2404 A 1 HETATM 21 C C21 CLR . . . E 4 10.537 3.155 12.659 1 53.54 ? C21 CLR 2404 A 1 HETATM 22 C C22 CLR . . . E 4 12.396 1.75 11.769 1 58.05 ? C22 CLR 2404 A 1 HETATM 23 C C23 CLR . . . E 4 11.62 0.562 11.228 1 62.51 ? C23 CLR 2404 A 1 HETATM 24 C C24 CLR . . . E 4 12.4 -0.714 11.316 1 66.71 ? C24 CLR 2404 A 1 HETATM 25 C C25 CLR . . . E 4 11.61 -2.026 11.201 1 74.39 ? C25 CLR 2404 A 1 HETATM 26 C C26 CLR . . . E 4 11.025 -2.426 12.552 1 67.15 ? C26 CLR 2404 A 1 HETATM 27 C C27 CLR . . . E 4 10.523 -1.962 10.126 1 76.7 ? C27 CLR 2404 A 1 HETATM 28 O O1 CLR . . . E 4 13.321 14.086 14.181 1 46.43 ? O1 CLR 2404 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #