data_6LPK
#
_model_server_result.job_id            sHIbKyzEW2QlpYk5WZNmJw 
_model_server_result.datetime_utc      '2024-11-22 19:25:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lpk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2409}' 
#
_entry.id    6LPK 
#
_exptl.entry_id    6LPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              212.415 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PENTADECANE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6LPK 
_cell.length_a            40.5 
_cell.length_b            179.2 
_cell.length_c            142.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 J N N 
? 6 O N N 
? 6 R N N 
? 6 Y N N 
? 6 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? 
disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 C NA NA . A NA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc2 A OG SER 116 A SER 91 1_555 C NA NA . A NA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc3 C NA NA . A NA 2402 1_555 CA O HOH . A HOH 2522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc4 C NA NA . A NA 2402 1_555 CA O HOH . A HOH 2546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc5 C NA NA . A NA 2402 1_555 CA O HOH . A HOH 2579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
#
_chem_comp.formula           'C15 H32' 
_chem_comp.formula_weight    212.415 
_chem_comp.id                MYS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PENTADECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MYS sing 538 n n 
C1 H11 MYS sing 539 n n 
C1 H12 MYS sing 540 n n 
C1 H13 MYS sing 541 n n 
C2 C3 MYS sing 542 n n 
C2 H21 MYS sing 543 n n 
C2 H22 MYS sing 544 n n 
C3 C4 MYS sing 545 n n 
C3 H31 MYS sing 546 n n 
C3 H32 MYS sing 547 n n 
C4 C5 MYS sing 548 n n 
C4 H41 MYS sing 549 n n 
C4 H42 MYS sing 550 n n 
C5 C6 MYS sing 551 n n 
C5 H51 MYS sing 552 n n 
C5 H52 MYS sing 553 n n 
C6 C7 MYS sing 554 n n 
C6 H61 MYS sing 555 n n 
C6 H62 MYS sing 556 n n 
C7 C8 MYS sing 557 n n 
C7 H71 MYS sing 558 n n 
C7 H72 MYS sing 559 n n 
C8 C9 MYS sing 560 n n 
C8 H81 MYS sing 561 n n 
C8 H82 MYS sing 562 n n 
C9 C10 MYS sing 563 n n 
C9 H91 MYS sing 564 n n 
C9 H92 MYS sing 565 n n 
C10 C11 MYS sing 566 n n 
C10 H101 MYS sing 567 n n 
C10 H102 MYS sing 568 n n 
C11 C12 MYS sing 569 n n 
C11 H111 MYS sing 570 n n 
C11 H112 MYS sing 571 n n 
C12 C13 MYS sing 572 n n 
C12 H121 MYS sing 573 n n 
C12 H122 MYS sing 574 n n 
C13 C14 MYS sing 575 n n 
C13 H131 MYS sing 576 n n 
C13 H132 MYS sing 577 n n 
C14 C15 MYS sing 578 n n 
C14 H141 MYS sing 579 n n 
C14 H142 MYS sing 580 n n 
C15 H151 MYS sing 581 n n 
C15 H152 MYS sing 582 n n 
C15 H153 MYS sing 583 n n 
#
_atom_sites.entry_id                     6LPK 
_atom_sites.fract_transf_matrix[1][1]    0.024691 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00558 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006998 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZMA A 1 2401 2401 ZMA ZMA . 
C 3 NA A 1 2402 2402 NA NA . 
D 4 CLR A 1 2403 2403 CLR CLR . 
E 4 CLR A 1 2404 2404 CLR CLR . 
F 4 CLR A 1 2405 2405 CLR CLR . 
G 5 D12 A 1 2406 2406 D12 D12 . 
H 6 MYS A 1 2407 2407 MYS MYS . 
I 7 HEX A 1 2408 2408 HEX HEX . 
J 6 MYS A 1 2409 2409 MYS MYS . 
K 8 8K6 A 1 2410 2410 8K6 8K6 . 
L 9 D10 A 1 2411 2411 D10 D10 . 
M 10 OCT A 1 2412 2412 OCT OCT . 
N 10 OCT A 1 2413 2413 OCT OCT . 
O 6 MYS A 1 2414 2414 MYS MYS . 
P 11 UND A 1 2415 2415 UND UND . 
Q 12 ER0 A 1 2416 2416 ER0 ER0 . 
R 6 MYS A 1 2417 2417 MYS MYS . 
S 8 8K6 A 1 2418 2418 8K6 8K6 . 
T 8 8K6 A 1 2419 2419 8K6 8K6 . 
U 13 TRD A 1 2420 2420 TRD TRD . 
V 10 OCT A 1 2421 2422 OCT OCT . 
W 13 TRD A 1 2422 2423 TRD TRD . 
X 12 ER0 A 1 2423 2424 ER0 ER0 . 
Y 6 MYS A 1 2424 2425 MYS MYS . 
Z 13 TRD A 1 2425 2426 TRD TRD . 
AA 6 MYS A 1 2426 2427 MYS MYS . 
BA 13 TRD A 1 2427 2428 TRD TRD . 
CA 14 HOH A 1 2501 2681 HOH HOH . 
CA 14 HOH A 2 2502 2505 HOH HOH . 
CA 14 HOH A 3 2503 2689 HOH HOH . 
CA 14 HOH A 4 2504 2658 HOH HOH . 
CA 14 HOH A 5 2505 2603 HOH HOH . 
CA 14 HOH A 6 2506 2594 HOH HOH . 
CA 14 HOH A 7 2507 2512 HOH HOH . 
CA 14 HOH A 8 2508 2575 HOH HOH . 
CA 14 HOH A 9 2509 2508 HOH HOH . 
CA 14 HOH A 10 2510 2604 HOH HOH . 
CA 14 HOH A 11 2511 2597 HOH HOH . 
CA 14 HOH A 12 2512 2548 HOH HOH . 
CA 14 HOH A 13 2513 2536 HOH HOH . 
CA 14 HOH A 14 2514 2530 HOH HOH . 
CA 14 HOH A 15 2515 2585 HOH HOH . 
CA 14 HOH A 16 2516 2678 HOH HOH . 
CA 14 HOH A 17 2517 2521 HOH HOH . 
CA 14 HOH A 18 2518 2596 HOH HOH . 
CA 14 HOH A 19 2519 2528 HOH HOH . 
CA 14 HOH A 20 2520 2517 HOH HOH . 
CA 14 HOH A 21 2521 2573 HOH HOH . 
CA 14 HOH A 22 2522 2529 HOH HOH . 
CA 14 HOH A 23 2523 2562 HOH HOH . 
CA 14 HOH A 24 2524 2563 HOH HOH . 
CA 14 HOH A 25 2525 2558 HOH HOH . 
CA 14 HOH A 26 2526 2641 HOH HOH . 
CA 14 HOH A 27 2527 2534 HOH HOH . 
CA 14 HOH A 28 2528 2654 HOH HOH . 
CA 14 HOH A 29 2529 2643 HOH HOH . 
CA 14 HOH A 30 2530 2567 HOH HOH . 
CA 14 HOH A 31 2531 2513 HOH HOH . 
CA 14 HOH A 32 2532 2520 HOH HOH . 
CA 14 HOH A 33 2533 2684 HOH HOH . 
CA 14 HOH A 34 2534 2615 HOH HOH . 
CA 14 HOH A 35 2535 2554 HOH HOH . 
CA 14 HOH A 36 2536 2532 HOH HOH . 
CA 14 HOH A 37 2537 2533 HOH HOH . 
CA 14 HOH A 38 2538 2542 HOH HOH . 
CA 14 HOH A 39 2539 2561 HOH HOH . 
CA 14 HOH A 40 2540 2516 HOH HOH . 
CA 14 HOH A 41 2541 2613 HOH HOH . 
CA 14 HOH A 42 2542 2514 HOH HOH . 
CA 14 HOH A 43 2543 2583 HOH HOH . 
CA 14 HOH A 44 2544 2511 HOH HOH . 
CA 14 HOH A 45 2545 2519 HOH HOH . 
CA 14 HOH A 46 2546 2552 HOH HOH . 
CA 14 HOH A 47 2547 2518 HOH HOH . 
CA 14 HOH A 48 2548 2515 HOH HOH . 
CA 14 HOH A 49 2549 2522 HOH HOH . 
CA 14 HOH A 50 2550 2629 HOH HOH . 
CA 14 HOH A 51 2551 2531 HOH HOH . 
CA 14 HOH A 52 2552 2527 HOH HOH . 
CA 14 HOH A 53 2553 2526 HOH HOH . 
CA 14 HOH A 54 2554 2535 HOH HOH . 
CA 14 HOH A 55 2555 2601 HOH HOH . 
CA 14 HOH A 56 2556 2668 HOH HOH . 
CA 14 HOH A 57 2557 2578 HOH HOH . 
CA 14 HOH A 58 2558 2637 HOH HOH . 
CA 14 HOH A 59 2559 2666 HOH HOH . 
CA 14 HOH A 60 2560 2638 HOH HOH . 
CA 14 HOH A 61 2561 2543 HOH HOH . 
CA 14 HOH A 62 2562 2639 HOH HOH . 
CA 14 HOH A 63 2563 2608 HOH HOH . 
CA 14 HOH A 64 2564 2572 HOH HOH . 
CA 14 HOH A 65 2565 2664 HOH HOH . 
CA 14 HOH A 66 2566 2524 HOH HOH . 
CA 14 HOH A 67 2567 2620 HOH HOH . 
CA 14 HOH A 68 2568 2523 HOH HOH . 
CA 14 HOH A 69 2569 2541 HOH HOH . 
CA 14 HOH A 70 2570 2559 HOH HOH . 
CA 14 HOH A 71 2571 2679 HOH HOH . 
CA 14 HOH A 72 2572 2553 HOH HOH . 
CA 14 HOH A 73 2573 2525 HOH HOH . 
CA 14 HOH A 74 2574 2546 HOH HOH . 
CA 14 HOH A 75 2575 2564 HOH HOH . 
CA 14 HOH A 76 2576 2560 HOH HOH . 
CA 14 HOH A 77 2577 2570 HOH HOH . 
CA 14 HOH A 78 2578 2566 HOH HOH . 
CA 14 HOH A 79 2579 2579 HOH HOH . 
CA 14 HOH A 80 2580 2616 HOH HOH . 
CA 14 HOH A 81 2581 2569 HOH HOH . 
CA 14 HOH A 82 2582 2577 HOH HOH . 
CA 14 HOH A 83 2583 2557 HOH HOH . 
CA 14 HOH A 84 2584 2676 HOH HOH . 
CA 14 HOH A 85 2585 2609 HOH HOH . 
CA 14 HOH A 86 2586 2539 HOH HOH . 
CA 14 HOH A 87 2587 2550 HOH HOH . 
CA 14 HOH A 88 2588 2683 HOH HOH . 
CA 14 HOH A 89 2589 2547 HOH HOH . 
CA 14 HOH A 90 2590 2576 HOH HOH . 
CA 14 HOH A 91 2591 2685 HOH HOH . 
CA 14 HOH A 92 2592 2686 HOH HOH . 
CA 14 HOH A 93 2593 2556 HOH HOH . 
CA 14 HOH A 94 2594 2537 HOH HOH . 
CA 14 HOH A 95 2595 2581 HOH HOH . 
CA 14 HOH A 96 2596 2618 HOH HOH . 
CA 14 HOH A 97 2597 2510 HOH HOH . 
CA 14 HOH A 98 2598 2574 HOH HOH . 
CA 14 HOH A 99 2599 2688 HOH HOH . 
CA 14 HOH A 100 2600 2625 HOH HOH . 
CA 14 HOH A 101 2601 2680 HOH HOH . 
CA 14 HOH A 102 2602 2607 HOH HOH . 
CA 14 HOH A 103 2603 2645 HOH HOH . 
CA 14 HOH A 104 2604 2589 HOH HOH . 
CA 14 HOH A 105 2605 2584 HOH HOH . 
CA 14 HOH A 106 2606 2592 HOH HOH . 
CA 14 HOH A 107 2607 2538 HOH HOH . 
CA 14 HOH A 108 2608 2545 HOH HOH . 
CA 14 HOH A 109 2609 2655 HOH HOH . 
CA 14 HOH A 110 2610 2652 HOH HOH . 
CA 14 HOH A 111 2611 2621 HOH HOH . 
CA 14 HOH A 112 2612 2507 HOH HOH . 
CA 14 HOH A 113 2613 2677 HOH HOH . 
CA 14 HOH A 114 2614 2614 HOH HOH . 
CA 14 HOH A 115 2615 2591 HOH HOH . 
CA 14 HOH A 116 2616 2687 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MYS . . . J 6 -22.579 14.641 14.688 1 81.59 ? C1 MYS 2409 A 1 
HETATM 2 C C2 MYS . . . J 6 -21.946 13.295 14.995 1 75.73 ? C2 MYS 2409 A 1 
HETATM 3 C C3 MYS . . . J 6 -22.584 12.184 14.16 1 70.63 ? C3 MYS 2409 A 1 
HETATM 4 C C4 MYS . . . J 6 -22.004 10.839 14.564 1 65.59 ? C4 MYS 2409 A 1 
HETATM 5 C C5 MYS . . . J 6 -22.532 9.692 13.697 1 67.77 ? C5 MYS 2409 A 1 
HETATM 6 C C6 MYS . . . J 6 -21.847 8.374 14.044 1 62.29 ? C6 MYS 2409 A 1 
HETATM 7 C C7 MYS . . . J 6 -22.341 7.176 13.236 1 65.58 ? C7 MYS 2409 A 1 
HETATM 8 C C8 MYS . . . J 6 -22.34 5.906 14.083 1 64.19 ? C8 MYS 2409 A 1 
HETATM 9 C C9 MYS . . . J 6 -22.965 4.681 13.427 1 63.72 ? C9 MYS 2409 A 1 
HETATM 10 C C10 MYS . . . J 6 -23.544 3.711 14.461 1 66.07 ? C10 MYS 2409 A 1 
HETATM 11 C C11 MYS . . . J 6 -23.991 2.397 13.842 1 78.6 ? C11 MYS 2409 A 1 
HETATM 12 C C12 MYS . . . J 6 -23.709 1.236 14.786 1 85.09 ? C12 MYS 2409 A 1 
HETATM 13 C C13 MYS . . . J 6 -24.629 0.063 14.508 1 84.72 ? C13 MYS 2409 A 1 
HETATM 14 C C14 MYS . . . J 6 -24.289 -1.113 15.417 1 85.26 ? C14 MYS 2409 A 1 
HETATM 15 C C15 MYS . . . J 6 -25.368 -2.173 15.324 1 83.52 ? C15 MYS 2409 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#