data_6LPP
#
_model_server_result.job_id            4lV8FCyTlpWtGEi5dz2Fjw 
_model_server_result.datetime_utc      '2024-11-13 20:40:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lpp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":607}' 
#
_entry.id    6LPP 
#
_exptl.entry_id    6LPP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.9 
_cell.angle_gamma         90 
_cell.entry_id            6LPP 
_cell.length_a            72.275 
_cell.length_b            94.593 
_cell.length_c            73.399 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LPP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 388 A HIS 434 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc2 A NE2 HIS 395 A HIS 441 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc3 A OE1 GLU 429 A GLU 475 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
metalc ? metalc4 D ZN ZN . A ZN 602 1_555 E O1 2HG . A 2HG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc5 D ZN ZN . A ZN 602 1_555 E O3 2HG . A 2HG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc6 B NE2 HIS 388 B HIS 434 1_555 I ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc7 B NE2 HIS 395 B HIS 441 1_555 I ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc8 B OE1 GLU 429 B GLU 475 1_555 I ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc9 I ZN ZN . B ZN 602 1_555 J O1 2HG . B 2HG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc10 I ZN ZN . B ZN 602 1_555 J O3 2HG . B 2HG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 237 n n 
C1 C2 GOL sing 238 n n 
C1 H11 GOL sing 239 n n 
C1 H12 GOL sing 240 n n 
O1 HO1 GOL sing 241 n n 
C2 O2 GOL sing 242 n n 
C2 C3 GOL sing 243 n n 
C2 H2 GOL sing 244 n n 
O2 HO2 GOL sing 245 n n 
C3 O3 GOL sing 246 n n 
C3 H31 GOL sing 247 n n 
C3 H32 GOL sing 248 n n 
O3 HO3 GOL sing 249 n n 
#
_atom_sites.entry_id                     6LPP 
_atom_sites.fract_transf_matrix[1][1]    0.013836 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005561 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010572 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014684 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 601 601 FAD FAD . 
D 3 ZN A 1 602 1 ZN ZN . 
E 4 2HG A 1 603 1 2HG 2HG . 
F 5 GOL A 1 604 1 GOL GOL . 
G 5 GOL A 1 605 9 GOL GOL . 
H 2 FAD B 1 601 601 FAD FAD . 
I 3 ZN B 1 602 2 ZN ZN . 
J 4 2HG B 1 603 2 2HG 2HG . 
K 5 GOL B 1 604 2 GOL GOL . 
L 5 GOL B 1 605 3 GOL GOL . 
M 5 GOL B 1 606 4 GOL GOL . 
N 5 GOL B 1 607 5 GOL GOL . 
O 5 GOL B 1 608 8 GOL GOL . 
P 6 HOH A 1 701 61 HOH HOH . 
P 6 HOH A 2 702 123 HOH HOH . 
P 6 HOH A 3 703 30 HOH HOH . 
P 6 HOH A 4 704 68 HOH HOH . 
P 6 HOH A 5 705 6 HOH HOH . 
P 6 HOH A 6 706 111 HOH HOH . 
P 6 HOH A 7 707 38 HOH HOH . 
P 6 HOH A 8 708 122 HOH HOH . 
P 6 HOH A 9 709 116 HOH HOH . 
P 6 HOH A 10 710 32 HOH HOH . 
P 6 HOH A 11 711 127 HOH HOH . 
P 6 HOH A 12 712 107 HOH HOH . 
P 6 HOH A 13 713 115 HOH HOH . 
P 6 HOH A 14 714 67 HOH HOH . 
P 6 HOH A 15 715 45 HOH HOH . 
P 6 HOH A 16 716 65 HOH HOH . 
P 6 HOH A 17 717 53 HOH HOH . 
P 6 HOH A 18 718 14 HOH HOH . 
P 6 HOH A 19 719 106 HOH HOH . 
P 6 HOH A 20 720 29 HOH HOH . 
P 6 HOH A 21 721 74 HOH HOH . 
P 6 HOH A 22 722 25 HOH HOH . 
P 6 HOH A 23 723 15 HOH HOH . 
P 6 HOH A 24 724 33 HOH HOH . 
P 6 HOH A 25 725 76 HOH HOH . 
P 6 HOH A 26 726 89 HOH HOH . 
P 6 HOH A 27 727 19 HOH HOH . 
P 6 HOH A 28 728 104 HOH HOH . 
P 6 HOH A 29 729 44 HOH HOH . 
P 6 HOH A 30 730 128 HOH HOH . 
P 6 HOH A 31 731 23 HOH HOH . 
P 6 HOH A 32 732 47 HOH HOH . 
P 6 HOH A 33 733 39 HOH HOH . 
P 6 HOH A 34 734 42 HOH HOH . 
P 6 HOH A 35 735 51 HOH HOH . 
P 6 HOH A 36 736 13 HOH HOH . 
P 6 HOH A 37 737 79 HOH HOH . 
P 6 HOH A 38 738 72 HOH HOH . 
P 6 HOH A 39 739 48 HOH HOH . 
P 6 HOH A 40 740 21 HOH HOH . 
P 6 HOH A 41 741 94 HOH HOH . 
P 6 HOH A 42 742 64 HOH HOH . 
P 6 HOH A 43 743 46 HOH HOH . 
P 6 HOH A 44 744 78 HOH HOH . 
P 6 HOH A 45 745 114 HOH HOH . 
P 6 HOH A 46 746 121 HOH HOH . 
P 6 HOH A 47 747 22 HOH HOH . 
P 6 HOH A 48 748 120 HOH HOH . 
P 6 HOH A 49 749 81 HOH HOH . 
P 6 HOH A 50 750 17 HOH HOH . 
P 6 HOH A 51 751 58 HOH HOH . 
P 6 HOH A 52 752 62 HOH HOH . 
P 6 HOH A 53 753 70 HOH HOH . 
P 6 HOH A 54 754 91 HOH HOH . 
Q 6 HOH B 1 701 129 HOH HOH . 
Q 6 HOH B 2 702 125 HOH HOH . 
Q 6 HOH B 3 703 130 HOH HOH . 
Q 6 HOH B 4 704 126 HOH HOH . 
Q 6 HOH B 5 705 109 HOH HOH . 
Q 6 HOH B 6 706 124 HOH HOH . 
Q 6 HOH B 7 707 43 HOH HOH . 
Q 6 HOH B 8 708 1 HOH HOH . 
Q 6 HOH B 9 709 2 HOH HOH . 
Q 6 HOH B 10 710 26 HOH HOH . 
Q 6 HOH B 11 711 11 HOH HOH . 
Q 6 HOH B 12 712 50 HOH HOH . 
Q 6 HOH B 13 713 7 HOH HOH . 
Q 6 HOH B 14 714 52 HOH HOH . 
Q 6 HOH B 15 715 73 HOH HOH . 
Q 6 HOH B 16 716 3 HOH HOH . 
Q 6 HOH B 17 717 84 HOH HOH . 
Q 6 HOH B 18 718 24 HOH HOH . 
Q 6 HOH B 19 719 35 HOH HOH . 
Q 6 HOH B 20 720 9 HOH HOH . 
Q 6 HOH B 21 721 37 HOH HOH . 
Q 6 HOH B 22 722 31 HOH HOH . 
Q 6 HOH B 23 723 12 HOH HOH . 
Q 6 HOH B 24 724 108 HOH HOH . 
Q 6 HOH B 25 725 4 HOH HOH . 
Q 6 HOH B 26 726 60 HOH HOH . 
Q 6 HOH B 27 727 8 HOH HOH . 
Q 6 HOH B 28 728 49 HOH HOH . 
Q 6 HOH B 29 729 40 HOH HOH . 
Q 6 HOH B 30 730 75 HOH HOH . 
Q 6 HOH B 31 731 63 HOH HOH . 
Q 6 HOH B 32 732 41 HOH HOH . 
Q 6 HOH B 33 733 34 HOH HOH . 
Q 6 HOH B 34 734 66 HOH HOH . 
Q 6 HOH B 35 735 10 HOH HOH . 
Q 6 HOH B 36 736 57 HOH HOH . 
Q 6 HOH B 37 737 36 HOH HOH . 
Q 6 HOH B 38 738 87 HOH HOH . 
Q 6 HOH B 39 739 69 HOH HOH . 
Q 6 HOH B 40 740 86 HOH HOH . 
Q 6 HOH B 41 741 55 HOH HOH . 
Q 6 HOH B 42 742 18 HOH HOH . 
Q 6 HOH B 43 743 110 HOH HOH . 
Q 6 HOH B 44 744 95 HOH HOH . 
Q 6 HOH B 45 745 77 HOH HOH . 
Q 6 HOH B 46 746 117 HOH HOH . 
Q 6 HOH B 47 747 82 HOH HOH . 
Q 6 HOH B 48 748 119 HOH HOH . 
Q 6 HOH B 49 749 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . N 5 41.384 8.048 1.337 1 49.51 ? C1 GOL 607 B 1 
HETATM 2 O O1 GOL . . . N 5 40.219 7.532 0.738 1 47.38 ? O1 GOL 607 B 1 
HETATM 3 C C2 GOL . . . N 5 42.613 7.391 0.722 1 47.75 ? C2 GOL 607 B 1 
HETATM 4 O O2 GOL . . . N 5 43.202 8.141 -0.315 1 53.56 ? O2 GOL 607 B 1 
HETATM 5 C C3 GOL . . . N 5 43.582 7.158 1.921 1 50.13 ? C3 GOL 607 B 1 
HETATM 6 O O3 GOL . . . N 5 42.836 6.695 2.952 1 33.23 ? O3 GOL 607 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           218 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#