data_6LPU
#
_model_server_result.job_id            t_kOKgrI7qpN7pkPL9nHDQ 
_model_server_result.datetime_utc      '2024-11-14 04:53:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lpu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    6LPU 
#
_exptl.entry_id    6LPU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.25 
_cell.angle_gamma         90 
_cell.entry_id            6LPU 
_cell.length_a            71.709 
_cell.length_b            94.53 
_cell.length_c            72.789 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LPU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 355 A LYS 401 1_555 E O4 S2G . A S2G 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? 
metalc ? metalc1 A NE2 HIS 388 A HIS 434 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc2 A NE2 HIS 395 A HIS 441 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc3 A OE2 GLU 429 A GLU 475 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc4 D ZN ZN . A ZN 602 1_555 E O2 S2G . A S2G 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc5 D ZN ZN . A ZN 602 1_555 E O3 S2G . A S2G 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc6 B NE2 HIS 388 B HIS 434 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc7 B NE2 HIS 395 B HIS 441 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc8 B OE1 GLU 429 B GLU 475 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc9 G ZN ZN . B ZN 602 1_555 H O1 S2G . B S2G 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc10 G ZN ZN . B ZN 602 1_555 H O3 S2G . B S2G 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6LPU 
_atom_sites.fract_transf_matrix[1][1]    0.013945 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005704 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010579 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014843 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 601 3 FAD FAD . 
D 3 ZN A 1 602 1002 ZN ZN . 
E 4 S2G A 1 603 3 S2G 2HG . 
F 2 FAD B 1 601 4 FAD FAD . 
G 3 ZN B 1 602 1003 ZN ZN . 
H 4 S2G B 1 603 2 S2G 2HG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . F 2 24.322 28.275 15.619 1 35.62 ? PA FAD 601 B 1 
HETATM 2 O O1A FAD . . . F 2 25.04 29.514 16.005 1 35.69 ? O1A FAD 601 B 1 
HETATM 3 O O2A FAD . . . F 2 25.196 27.028 15.445 1 30.58 ? O2A FAD 601 B 1 
HETATM 4 O O5B FAD . . . F 2 23.477 28.512 14.316 1 27.29 ? O5B FAD 601 B 1 
HETATM 5 C C5B FAD . . . F 2 22.859 27.414 13.612 1 31.02 ? C5B FAD 601 B 1 
HETATM 6 C C4B FAD . . . F 2 21.924 27.945 12.552 1 34.93 ? C4B FAD 601 B 1 
HETATM 7 O O4B FAD . . . F 2 20.862 28.707 13.172 1 37.3 ? O4B FAD 601 B 1 
HETATM 8 C C3B FAD . . . F 2 22.559 28.874 11.521 1 36.63 ? C3B FAD 601 B 1 
HETATM 9 O O3B FAD . . . F 2 21.965 28.695 10.24 1 40.51 ? O3B FAD 601 B 1 
HETATM 10 C C2B FAD . . . F 2 22.274 30.261 12.099 1 31.18 ? C2B FAD 601 B 1 
HETATM 11 O O2B FAD . . . F 2 22.231 31.268 11.095 1 30.24 ? O2B FAD 601 B 1 
HETATM 12 C C1B FAD . . . F 2 20.895 30.049 12.72 1 36.43 ? C1B FAD 601 B 1 
HETATM 13 N N9A FAD . . . F 2 20.606 30.922 13.855 1 32.96 ? N9A FAD 601 B 1 
HETATM 14 C C8A FAD . . . F 2 21.31 31.019 15.026 1 31.53 ? C8A FAD 601 B 1 
HETATM 15 N N7A FAD . . . F 2 20.818 31.887 15.877 1 32.46 ? N7A FAD 601 B 1 
HETATM 16 C C5A FAD . . . F 2 19.71 32.399 15.218 1 30.91 ? C5A FAD 601 B 1 
HETATM 17 C C6A FAD . . . F 2 18.751 33.364 15.582 1 27 ? C6A FAD 601 B 1 
HETATM 18 N N6A FAD . . . F 2 18.756 34.016 16.748 1 27.33 ? N6A FAD 601 B 1 
HETATM 19 N N1A FAD . . . F 2 17.773 33.643 14.691 1 24.43 ? N1A FAD 601 B 1 
HETATM 20 C C2A FAD . . . F 2 17.763 32.996 13.523 1 25.5 ? C2A FAD 601 B 1 
HETATM 21 N N3A FAD . . . F 2 18.611 32.069 13.072 1 26.46 ? N3A FAD 601 B 1 
HETATM 22 C C4A FAD . . . F 2 19.568 31.814 13.971 1 29.45 ? C4A FAD 601 B 1 
HETATM 23 N N1 FAD . . . F 2 21.356 19.157 17.584 1 35.78 ? N1 FAD 601 B 1 
HETATM 24 C C2 FAD . . . F 2 20.22 18.46 17.875 1 36.93 ? C2 FAD 601 B 1 
HETATM 25 O O2 FAD . . . F 2 19.178 18.623 17.23 1 39.32 ? O2 FAD 601 B 1 
HETATM 26 N N3 FAD . . . F 2 20.228 17.542 18.908 1 39.28 ? N3 FAD 601 B 1 
HETATM 27 C C4 FAD . . . F 2 21.3 17.244 19.722 1 36.17 ? C4 FAD 601 B 1 
HETATM 28 O O4 FAD . . . F 2 21.186 16.405 20.614 1 41.06 ? O4 FAD 601 B 1 
HETATM 29 C C4X FAD . . . F 2 22.5 17.997 19.412 1 36.3 ? C4X FAD 601 B 1 
HETATM 30 N N5 FAD . . . F 2 23.56 17.775 20.133 1 36.38 ? N5 FAD 601 B 1 
HETATM 31 C C5X FAD . . . F 2 24.709 18.489 19.841 1 31.41 ? C5X FAD 601 B 1 
HETATM 32 C C6 FAD . . . F 2 25.85 18.259 20.609 1 30.03 ? C6 FAD 601 B 1 
HETATM 33 C C7 FAD . . . F 2 27.031 18.949 20.36 1 35.55 ? C7 FAD 601 B 1 
HETATM 34 C C7M FAD . . . F 2 28.244 18.675 21.21 1 34.38 ? C7M FAD 601 B 1 
HETATM 35 C C8 FAD . . . F 2 27.076 19.892 19.32 1 34.84 ? C8 FAD 601 B 1 
HETATM 36 C C8M FAD . . . F 2 28.336 20.66 19.027 1 33.18 ? C8M FAD 601 B 1 
HETATM 37 C C9 FAD . . . F 2 25.938 20.125 18.552 1 38.36 ? C9 FAD 601 B 1 
HETATM 38 C C9A FAD . . . F 2 24.759 19.434 18.805 1 36.83 ? C9A FAD 601 B 1 
HETATM 39 N N10 FAD . . . F 2 23.587 19.656 18.051 1 34.58 ? N10 FAD 601 B 1 
HETATM 40 C C10 FAD . . . F 2 22.433 18.938 18.324 1 36.86 ? C10 FAD 601 B 1 
HETATM 41 C C1' FAD . . . F 2 23.589 20.624 16.933 1 34.57 ? C1' FAD 601 B 1 
HETATM 42 C C2' FAD . . . F 2 22.564 21.747 17.079 1 31.51 ? C2' FAD 601 B 1 
HETATM 43 O O2' FAD . . . F 2 22.152 22.209 15.792 1 37.37 ? O2' FAD 601 B 1 
HETATM 44 C C3' FAD . . . F 2 23.18 22.911 17.852 1 35.07 ? C3' FAD 601 B 1 
HETATM 45 O O3' FAD . . . F 2 23.837 22.411 19.01 1 34.91 ? O3' FAD 601 B 1 
HETATM 46 C C4' FAD . . . F 2 22.145 23.955 18.271 1 32.38 ? C4' FAD 601 B 1 
HETATM 47 O O4' FAD . . . F 2 20.836 23.4 18.134 1 27.98 ? O4' FAD 601 B 1 
HETATM 48 C C5' FAD . . . F 2 22.249 25.233 17.467 1 29.43 ? C5' FAD 601 B 1 
HETATM 49 O O5' FAD . . . F 2 22.381 26.347 18.375 1 27.6 ? O5' FAD 601 B 1 
HETATM 50 P P FAD . . . F 2 23.496 27.437 18.168 1 29.27 ? P FAD 601 B 1 
HETATM 51 O O1P FAD . . . F 2 23.251 28.613 19.117 1 30.1 ? O1P FAD 601 B 1 
HETATM 52 O O2P FAD . . . F 2 24.846 26.819 18.24 1 38.24 ? O2P FAD 601 B 1 
HETATM 53 O O3P FAD . . . F 2 23.206 27.939 16.694 1 34.34 ? O3P FAD 601 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#