data_6LPU # _model_server_result.job_id 6fj8bX0EVKbaQEaI9sJ7aw _model_server_result.datetime_utc '2024-11-14 04:43:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lpu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 6LPU # _exptl.entry_id 6LPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 148.114 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-HYDROXYPENTANEDIOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.25 _cell.angle_gamma 90 _cell.entry_id 6LPU _cell.length_a 71.709 _cell.length_b 94.53 _cell.length_c 72.789 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 355 A LYS 401 1_555 E O4 S2G . A S2G 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? metalc ? metalc1 A NE2 HIS 388 A HIS 434 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc2 A NE2 HIS 395 A HIS 441 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc3 A OE2 GLU 429 A GLU 475 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc4 D ZN ZN . A ZN 602 1_555 E O2 S2G . A S2G 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc5 D ZN ZN . A ZN 602 1_555 E O3 S2G . A S2G 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc6 B NE2 HIS 388 B HIS 434 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc7 B NE2 HIS 395 B HIS 441 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc8 B OE1 GLU 429 B GLU 475 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc9 G ZN ZN . B ZN 602 1_555 H O1 S2G . B S2G 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc10 G ZN ZN . B ZN 602 1_555 H O3 S2G . B S2G 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? # _chem_comp.formula 'C5 H8 O5' _chem_comp.formula_weight 148.114 _chem_comp.id S2G _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-HYDROXYPENTANEDIOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 S2G sing 366 n n C1 O1 S2G doub 367 n n C1 C2 S2G sing 368 n n C3 C4 S2G sing 369 n n C3 C2 S2G sing 370 n n C4 C5 S2G sing 371 n n C5 O5 S2G sing 372 n n C5 O4 S2G doub 373 n n O3 C2 S2G sing 374 n n C2 H2 S2G sing 375 n n C3 H3 S2G sing 376 n n C3 H3A S2G sing 377 n n C4 H4 S2G sing 378 n n C4 H4A S2G sing 379 n n O5 H5 S2G sing 380 n n O3 HO3 S2G sing 381 n n O2 HO2 S2G sing 382 n n # _atom_sites.entry_id 6LPU _atom_sites.fract_transf_matrix[1][1] 0.013945 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005704 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 601 3 FAD FAD . D 3 ZN A 1 602 1002 ZN ZN . E 4 S2G A 1 603 3 S2G 2HG . F 2 FAD B 1 601 4 FAD FAD . G 3 ZN B 1 602 1003 ZN ZN . H 4 S2G B 1 603 2 S2G 2HG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S2G . . . E 4 -15.658 22.206 24.611 1 40.87 ? C1 S2G 603 A 1 HETATM 2 C C3 S2G . . . E 4 -16.945 23.388 22.651 0.5 40.65 ? C3 S2G 603 A 1 HETATM 3 C C4 S2G . . . E 4 -17.651 24.722 22.399 0.5 44.11 ? C4 S2G 603 A 1 HETATM 4 C C5 S2G . . . E 4 -18.109 25.42 23.656 0.5 48.62 ? C5 S2G 603 A 1 HETATM 5 O O2 S2G . . . E 4 -14.475 22.111 25.155 1 36.35 ? O2 S2G 603 A 1 HETATM 6 O O1 S2G . . . E 4 -16.588 21.462 24.872 1 44.21 ? O1 S2G 603 A 1 HETATM 7 O O3 S2G . . . E 4 -14.547 23.307 22.82 1 42.64 ? O3 S2G 603 A 1 HETATM 8 O O5 S2G . . . E 4 -17.941 25.04 24.805 1 51.95 ? O5 S2G 603 A 1 HETATM 9 C C2 S2G . . . E 4 -15.766 23.347 23.614 1 41.77 ? C2 S2G 603 A 1 HETATM 10 O O4 S2G . . . E 4 -18.729 26.523 23.384 1 54.94 ? O4 S2G 603 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #