data_6LPX # _model_server_result.job_id fAa7sIYEhXsFx38SYgBmMA _model_server_result.datetime_utc '2024-12-08 01:04:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lpx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 6LPX # _exptl.entry_id 6LPX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.3 _cell.angle_gamma 90 _cell.entry_id 6LPX _cell.length_a 72.169 _cell.length_b 94.94 _cell.length_c 73.219 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 388 A HIS 434 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 A NE2 HIS 395 A HIS 441 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc3 A OE1 GLU 429 A GLU 475 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 D ZN ZN . A ZN 602 1_555 E O2 AKG . A AKG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc5 D ZN ZN . A ZN 602 1_555 E O5 AKG . A AKG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc6 B NE2 HIS 388 B HIS 434 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc7 B NE2 HIS 395 B HIS 441 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc8 B OE1 GLU 429 B GLU 475 1_555 G ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc9 G ZN ZN . B ZN 602 1_555 H O1 AKG . B AKG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc10 G ZN ZN . B ZN 602 1_555 H O5 AKG . B AKG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LPX _atom_sites.fract_transf_matrix[1][1] 0.013856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005682 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 601 601 FAD FAD . D 3 ZN A 1 602 1 ZN ZN . E 4 AKG A 1 603 1 AKG AKG . F 2 FAD B 1 601 601 FAD FAD . G 3 ZN B 1 602 2 ZN ZN . H 4 AKG B 1 603 2 AKG AKG . I 5 HOH A 1 701 82 HOH HOH . I 5 HOH A 2 702 11 HOH HOH . I 5 HOH A 3 703 28 HOH HOH . I 5 HOH A 4 704 20 HOH HOH . I 5 HOH A 5 705 4 HOH HOH . I 5 HOH A 6 706 91 HOH HOH . I 5 HOH A 7 707 75 HOH HOH . I 5 HOH A 8 708 57 HOH HOH . I 5 HOH A 9 709 54 HOH HOH . I 5 HOH A 10 710 85 HOH HOH . I 5 HOH A 11 711 52 HOH HOH . I 5 HOH A 12 712 3 HOH HOH . I 5 HOH A 13 713 60 HOH HOH . I 5 HOH A 14 714 62 HOH HOH . I 5 HOH A 15 715 67 HOH HOH . I 5 HOH A 16 716 21 HOH HOH . I 5 HOH A 17 717 58 HOH HOH . I 5 HOH A 18 718 71 HOH HOH . I 5 HOH A 19 719 15 HOH HOH . I 5 HOH A 20 720 37 HOH HOH . I 5 HOH A 21 721 12 HOH HOH . I 5 HOH A 22 722 83 HOH HOH . I 5 HOH A 23 723 38 HOH HOH . I 5 HOH A 24 724 41 HOH HOH . I 5 HOH A 25 725 79 HOH HOH . I 5 HOH A 26 726 46 HOH HOH . I 5 HOH A 27 727 64 HOH HOH . I 5 HOH A 28 728 59 HOH HOH . I 5 HOH A 29 729 27 HOH HOH . I 5 HOH A 30 730 89 HOH HOH . I 5 HOH A 31 731 7 HOH HOH . I 5 HOH A 32 732 49 HOH HOH . I 5 HOH A 33 733 56 HOH HOH . I 5 HOH A 34 734 43 HOH HOH . I 5 HOH A 35 735 70 HOH HOH . I 5 HOH A 36 736 19 HOH HOH . I 5 HOH A 37 737 29 HOH HOH . I 5 HOH A 38 738 88 HOH HOH . I 5 HOH A 39 739 84 HOH HOH . I 5 HOH A 40 740 18 HOH HOH . I 5 HOH A 41 741 9 HOH HOH . I 5 HOH A 42 742 78 HOH HOH . I 5 HOH A 43 743 72 HOH HOH . I 5 HOH A 44 744 17 HOH HOH . I 5 HOH A 45 745 68 HOH HOH . I 5 HOH A 46 746 76 HOH HOH . I 5 HOH A 47 747 32 HOH HOH . J 5 HOH B 1 701 34 HOH HOH . J 5 HOH B 2 702 55 HOH HOH . J 5 HOH B 3 703 14 HOH HOH . J 5 HOH B 4 704 6 HOH HOH . J 5 HOH B 5 705 25 HOH HOH . J 5 HOH B 6 706 63 HOH HOH . J 5 HOH B 7 707 24 HOH HOH . J 5 HOH B 8 708 10 HOH HOH . J 5 HOH B 9 709 90 HOH HOH . J 5 HOH B 10 710 36 HOH HOH . J 5 HOH B 11 711 1 HOH HOH . J 5 HOH B 12 712 51 HOH HOH . J 5 HOH B 13 713 16 HOH HOH . J 5 HOH B 14 714 33 HOH HOH . J 5 HOH B 15 715 8 HOH HOH . J 5 HOH B 16 716 30 HOH HOH . J 5 HOH B 17 717 92 HOH HOH . J 5 HOH B 18 718 5 HOH HOH . J 5 HOH B 19 719 2 HOH HOH . J 5 HOH B 20 720 87 HOH HOH . J 5 HOH B 21 721 13 HOH HOH . J 5 HOH B 22 722 23 HOH HOH . J 5 HOH B 23 723 93 HOH HOH . J 5 HOH B 24 724 48 HOH HOH . J 5 HOH B 25 725 81 HOH HOH . J 5 HOH B 26 726 22 HOH HOH . J 5 HOH B 27 727 61 HOH HOH . J 5 HOH B 28 728 50 HOH HOH . J 5 HOH B 29 729 47 HOH HOH . J 5 HOH B 30 730 31 HOH HOH . J 5 HOH B 31 731 53 HOH HOH . J 5 HOH B 32 732 39 HOH HOH . J 5 HOH B 33 733 45 HOH HOH . J 5 HOH B 34 734 80 HOH HOH . J 5 HOH B 35 735 40 HOH HOH . J 5 HOH B 36 736 35 HOH HOH . J 5 HOH B 37 737 66 HOH HOH . J 5 HOH B 38 738 77 HOH HOH . J 5 HOH B 39 739 44 HOH HOH . J 5 HOH B 40 740 94 HOH HOH . J 5 HOH B 41 741 65 HOH HOH . J 5 HOH B 42 742 86 HOH HOH . J 5 HOH B 43 743 74 HOH HOH . J 5 HOH B 44 744 42 HOH HOH . J 5 HOH B 45 745 69 HOH HOH . J 5 HOH B 46 746 26 HOH HOH . J 5 HOH B 47 747 73 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 203.49 _atom_site.Cartn_y -69.638 _atom_site.Cartn_z 24.44 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #