data_6LR4 # _model_server_result.job_id 7Wm18l1HejoM4dsd4EzXLQ _model_server_result.datetime_utc '2024-11-23 14:06:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lr4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":502}' # _entry.id 6LR4 # _exptl.entry_id 6LR4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 361.435 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-hydroxy-3-methyl-N-[(2S)-1-[[(5S)-3-methyl-4-oxo-2,5-dihydro-1H-3-benzazepin-5-yl]amino]-1-oxopropan-2-yl]butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LR4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LR4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 6 4 3 BMA BMA C1 O1 . O3 HO3 . sing 5 ? 6 5 3 BMA BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG A 1699 NAG 5 n E NAG 2 E 2 NAG A 1700 NAG 6 n F NAG 1 F 1 NAG A 1701 NAG 6 n F NAG 2 F 2 NAG A 1702 NAG 6 n F BMA 3 F 3 BMA A 1716 BMA 6 n F BMA 4 F 4 BMA A 1718 BMA 6 n F BMA 5 F 5 BMA A 1717 BMA 5 n G NAG 1 G 1 NAG A 1703 NAG 5 n G NAG 2 G 2 NAG A 1704 NAG 5 n H NAG 1 H 1 NAG A 1706 NAG 5 n H NAG 2 H 2 NAG A 1707 NAG 5 n I NAG 1 I 1 NAG A 1708 NAG 5 n I NAG 2 I 2 NAG A 1709 NAG 5 n J NAG 1 J 1 NAG A 1710 NAG 5 n J NAG 2 J 2 NAG A 1711 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 A CYS 50 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 140 A CYS 140 1_555 A SG CYS 159 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 A SG CYS 230 A CYS 230 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 586 A CYS 586 1_555 A SG CYS 620 A CYS 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 A ND2 ASN 45 A ASN 45 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 55 A ASN 55 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A ND2 ASN 187 A ASN 187 1_555 O C1 NAG . A NAG 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 264 A ASN 264 1_555 N C1 NAG . A NAG 819 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale5 A ND2 ASN 387 A ASN 387 1_555 K C1 NAG . A NAG 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 A ND2 ASN 435 A ASN 435 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale7 A ND2 ASN 506 A ASN 506 1_555 M C1 NAG . A NAG 818 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 A ND2 ASN 530 A ASN 530 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 A ND2 ASN 562 A ASN 562 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 A ND2 ASN 573 A ASN 573 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale11 A ND2 ASN 580 A ASN 580 1_555 P C1 NAG . A NAG 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale12 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale14 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale15 F O3 BMA . F BMA 3 1_555 F C1 BMA . F BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale16 F O6 BMA . F BMA 3 1_555 F C1 BMA . F BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale17 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale18 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale19 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale20 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C19 H27 N3 O4' _chem_comp.formula_weight 361.435 _chem_comp.id ESF _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-hydroxy-3-methyl-N-[(2S)-1-[[(5S)-3-methyl-4-oxo-2,5-dihydro-1H-3-benzazepin-5-yl]amino]-1-oxopropan-2-yl]butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 ESF sing 184 n n C10 C12 ESF sing 185 n n C13 C08 ESF sing 186 n n C13 N05 ESF sing 187 n n C13 O01 ESF doub 188 n n C15 C21 ESF doub 189 n y C15 C09 ESF sing 190 n y C17 C14 ESF sing 191 n n C17 N06 ESF sing 192 n n C17 O03 ESF doub 193 n n C20 N05 ESF sing 194 n n C21 C22 ESF sing 195 n y C22 C16 ESF doub 196 n y C24 C14 ESF sing 197 n n C26 C18 ESF sing 198 n n C08 N06 ESF sing 199 n n C09 C11 ESF doub 200 n y C11 C16 ESF sing 201 n y C12 N05 ESF sing 202 n n C14 N07 ESF sing 203 n n C18 C19 ESF sing 204 n n C18 C25 ESF sing 205 n n C19 C23 ESF sing 206 n n C19 O02 ESF sing 207 n n C23 N07 ESF sing 208 n n C23 O04 ESF doub 209 n n C10 H1 ESF sing 210 n n C10 H2 ESF sing 211 n n C15 H3 ESF sing 212 n n C20 H4 ESF sing 213 n n C20 H5 ESF sing 214 n n C20 H6 ESF sing 215 n n C21 H7 ESF sing 216 n n C22 H8 ESF sing 217 n n C24 H9 ESF sing 218 n n C24 H10 ESF sing 219 n n C24 H11 ESF sing 220 n n C26 H12 ESF sing 221 n n C26 H13 ESF sing 222 n n C26 H14 ESF sing 223 n n C08 H15 ESF sing 224 n n C12 H18 ESF sing 225 n n C12 H19 ESF sing 226 n n C14 H20 ESF sing 227 n n C16 H21 ESF sing 228 n n C18 H22 ESF sing 229 n n C19 H23 ESF sing 230 n n C25 H24 ESF sing 231 n n C25 H25 ESF sing 232 n n C25 H26 ESF sing 233 n n N06 H27 ESF sing 234 n n N07 H28 ESF sing 235 n n O02 H29 ESF sing 236 n n C08 C09 ESF sing 237 n n # _atom_sites.entry_id 6LR4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 7 NAG A 1 810 1705 NAG NAG . L 7 NAG A 1 817 1712 NAG NAG . M 7 NAG A 1 818 1713 NAG NAG . N 7 NAG A 1 819 1714 NAG NAG . O 7 NAG A 1 820 1715 NAG NAG . P 7 NAG A 1 821 1719 NAG NAG . Q 8 PC1 B 1 501 501 PC1 PC1 . R 9 ESF B 1 502 601 ESF LIG . S 10 CLR C 1 301 301 CLR CLR . T 10 CLR C 1 302 401 CLR CLR . U 10 CLR C 1 303 501 CLR CLR . V 8 PC1 C 1 304 601 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 ESF . . . R 9 168.82 176.256 140.812 1 81.5 ? C10 ESF 502 B 1 HETATM 2 C C13 ESF . . . R 9 170.322 174.585 142.198 1 81.5 ? C13 ESF 502 B 1 HETATM 3 C C15 ESF . . . R 9 167.37 175.486 144.258 1 81.5 ? C15 ESF 502 B 1 HETATM 4 C C17 ESF . . . R 9 168.97 173.005 145.137 1 81.5 ? C17 ESF 502 B 1 HETATM 5 C C20 ESF . . . R 9 171.07 173.622 140.073 1 81.5 ? C20 ESF 502 B 1 HETATM 6 C C21 ESF . . . R 9 166.422 176.494 144.374 1 81.5 ? C21 ESF 502 B 1 HETATM 7 C C22 ESF . . . R 9 166.262 177.409 143.342 1 81.5 ? C22 ESF 502 B 1 HETATM 8 C C24 ESF . . . R 9 170.341 171.51 146.543 1 81.5 ? C24 ESF 502 B 1 HETATM 9 C C26 ESF . . . R 9 164.866 174.281 146.525 1 81.5 ? C26 ESF 502 B 1 HETATM 10 C C08 ESF . . . R 9 169.15 174.27 143.077 1 81.5 ? C08 ESF 502 B 1 HETATM 11 C C09 ESF . . . R 9 168.164 175.38 143.12 1 81.5 ? C09 ESF 502 B 1 HETATM 12 C C11 ESF . . . R 9 167.999 176.295 142.083 1 81.5 ? C11 ESF 502 B 1 HETATM 13 C C12 ESF . . . R 9 168.931 174.844 140.254 1 81.5 ? C12 ESF 502 B 1 HETATM 14 C C14 ESF . . . R 9 169.488 172.773 146.525 1 81.5 ? C14 ESF 502 B 1 HETATM 15 C C16 ESF . . . R 9 167.051 177.306 142.204 1 81.5 ? C16 ESF 502 B 1 HETATM 16 C C18 ESF . . . R 9 165.1 174.177 148.028 1 81.5 ? C18 ESF 502 B 1 HETATM 17 C C19 ESF . . . R 9 166.221 173.193 148.339 1 81.5 ? C19 ESF 502 B 1 HETATM 18 C C23 ESF . . . R 9 167.449 173.574 147.568 1 81.5 ? C23 ESF 502 B 1 HETATM 19 C C25 ESF . . . R 9 165.392 175.547 148.629 1 81.5 ? C25 ESF 502 B 1 HETATM 20 N N05 ESF . . . R 9 170.129 174.355 140.907 1 81.5 ? N05 ESF 502 B 1 HETATM 21 N N06 ESF . . . R 9 169.572 173.957 144.429 1 81.5 ? N06 ESF 502 B 1 HETATM 22 N N07 ESF . . . R 9 168.407 172.655 147.485 1 81.5 ? N07 ESF 502 B 1 HETATM 23 O O01 ESF . . . R 9 171.364 175.019 142.662 1 81.5 ? O01 ESF 502 B 1 HETATM 24 O O02 ESF . . . R 9 166.508 173.224 149.741 1 81.5 ? O02 ESF 502 B 1 HETATM 25 O O03 ESF . . . R 9 168.042 172.342 144.703 1 81.5 ? O03 ESF 502 B 1 HETATM 26 O O04 ESF . . . R 9 167.539 174.676 147.053 1 81.5 ? O04 ESF 502 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 26 #