data_6LR6
#
_model_server_result.job_id            5PnUYhlvY8aOQ0BM6FYuXQ 
_model_server_result.datetime_utc      '2024-11-02 16:21:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lr6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1201}' 
#
_entry.id    6LR6 
#
_exptl.entry_id    6LR6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              567.661 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-Chloro-3-aminomethyl-7-[ethoxy]-3H-benzo[C][1,2]oxaborol-1-ol modified adenosine' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6LR6 
_cell.length_a            88.854 
_cell.length_b            95.798 
_cell.length_c            682.388 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LR6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C20 H22 B Cl N6 O9 P -3' 
_chem_comp.formula_weight    567.661 
_chem_comp.id                A2H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-Chloro-3-aminomethyl-7-[ethoxy]-3H-benzo[C][1,2]oxaborol-1-ol modified adenosine' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
B O1 A2H sing 1 n n 
B C12 A2H sing 2 n n 
B O2' A2H sing 3 n n 
B O3' A2H sing 4 n n 
P O1P A2H doub 5 n n 
P O2P A2H sing 6 n n 
P O3P A2H sing 7 n n 
P O5' A2H sing 8 n n 
CL C13 A2H sing 9 n n 
N1 C2 A2H doub 10 n y 
N1 C6 A2H sing 11 n y 
O1 C10 A2H sing 12 n n 
C2 N3 A2H sing 13 n y 
N3 C4 A2H doub 14 n y 
C4 C5 A2H sing 15 n y 
C4 N9 A2H sing 16 n y 
C5 C6 A2H doub 17 n y 
C5 N7 A2H sing 18 n y 
C6 N6 A2H sing 19 n n 
N7 C8 A2H doub 20 n y 
C8 N9 A2H sing 21 n y 
N9 C1' A2H sing 22 n n 
C1' C2' A2H sing 23 n n 
C1' O4' A2H sing 24 n n 
C10 C11 A2H sing 25 n n 
C10 C17 A2H sing 26 n n 
C11 C12 A2H doub 27 n y 
C11 C13 A2H sing 28 n y 
C12 C16 A2H sing 29 n y 
C13 C14 A2H doub 30 n y 
C14 C15 A2H sing 31 n y 
C15 C16 A2H doub 32 n y 
C16 O19 A2H sing 33 n n 
C17 N18 A2H sing 34 n n 
O19 C20 A2H sing 35 n n 
C2' O2' A2H sing 36 n n 
C2' C3' A2H sing 37 n n 
C20 C21 A2H sing 38 n n 
C3' O3' A2H sing 39 n n 
C3' C4' A2H sing 40 n n 
C4' O4' A2H sing 41 n n 
C4' C5' A2H sing 42 n n 
C5' O5' A2H sing 43 n n 
C2 H2 A2H sing 44 n n 
N6 HN6 A2H sing 45 n n 
N6 HN6A A2H sing 46 n n 
C8 H8 A2H sing 47 n n 
C1' H1' A2H sing 48 n n 
C10 H10 A2H sing 49 n n 
C14 H14 A2H sing 50 n n 
C15 H15 A2H sing 51 n n 
C17 H17 A2H sing 52 n n 
C17 H17A A2H sing 53 n n 
N18 HN18 A2H sing 54 n n 
N18 HN1A A2H sing 55 n n 
C2' H2' A2H sing 56 n n 
C20 H20 A2H sing 57 n n 
C20 H20A A2H sing 58 n n 
C21 H21 A2H sing 59 n n 
C21 H21A A2H sing 60 n n 
C21 H21B A2H sing 61 n n 
C3' H3' A2H sing 62 n n 
C4' H4' A2H sing 63 n n 
C5' H5' A2H sing 64 n n 
C5' "H5'A" A2H sing 65 n n 
#
_atom_sites.entry_id                     6LR6 
_atom_sites.fract_transf_matrix[1][1]    0.011254 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010439 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001465 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LSS A 1 1200 1200 LSS LSS . 
D 3 A2H A 1 1201 1201 A2H A26 . 
E 2 LSS B 1 1200 1200 LSS LSS . 
F 3 A2H B 1 1201 1201 A2H A26 . 
G 4 HOH B 1 1301 2 HOH HOH . 
G 4 HOH B 2 1302 3 HOH HOH . 
G 4 HOH B 3 1303 7 HOH HOH . 
G 4 HOH B 4 1304 9 HOH HOH . 
G 4 HOH B 5 1305 1 HOH HOH . 
G 4 HOH B 6 1306 10 HOH HOH . 
G 4 HOH B 7 1307 8 HOH HOH . 
G 4 HOH B 8 1308 4 HOH HOH . 
G 4 HOH B 9 1309 5 HOH HOH . 
G 4 HOH B 10 1310 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 B B A2H . . . F 3 58.543 -11.466 145.988 1 37.13 ? B A2H 1201 B 1 
HETATM 2 P P A2H . . . F 3 52.44 -8.075 145.554 1 62.3 ? P A2H 1201 B 1 
HETATM 3 CL CL A2H . . . F 3 63.196 -12.555 144.152 1 53.41 ? CL A2H 1201 B 1 
HETATM 4 N N1 A2H . . . F 3 54.656 -5.29 150.502 1 41.78 ? N1 A2H 1201 B 1 
HETATM 5 O O1 A2H . . . F 3 59.269 -12.616 146.492 1 31.03 ? O1 A2H 1201 B 1 
HETATM 6 C C2 A2H . . . F 3 55.555 -5.165 149.516 1 45.87 ? C2 A2H 1201 B 1 
HETATM 7 N N3 A2H . . . F 3 56.013 -6.233 148.845 1 51.55 ? N3 A2H 1201 B 1 
HETATM 8 C C4 A2H . . . F 3 55.574 -7.478 149.15 1 45.06 ? C4 A2H 1201 B 1 
HETATM 9 C C5 A2H . . . F 3 54.644 -7.63 150.166 1 42.97 ? C5 A2H 1201 B 1 
HETATM 10 C C6 A2H . . . F 3 54.185 -6.506 150.845 1 37.94 ? C6 A2H 1201 B 1 
HETATM 11 N N6 A2H . . . F 3 53.275 -6.623 151.84 1 33.89 ? N6 A2H 1201 B 1 
HETATM 12 N N7 A2H . . . F 3 54.379 -8.947 150.268 1 42.35 ? N7 A2H 1201 B 1 
HETATM 13 C C8 A2H . . . F 3 55.124 -9.588 149.341 1 35.98 ? C8 A2H 1201 B 1 
HETATM 14 N N9 A2H . . . F 3 55.857 -8.695 148.667 1 38.54 ? N9 A2H 1201 B 1 
HETATM 15 C C1' A2H . . . F 3 56.787 -9.009 147.565 1 42.33 ? C1' A2H 1201 B 1 
HETATM 16 C C10 A2H . . . F 3 60.657 -12.681 146.147 1 34.8 ? C10 A2H 1201 B 1 
HETATM 17 C C11 A2H . . . F 3 60.643 -11.813 144.957 1 45.85 ? C11 A2H 1201 B 1 
HETATM 18 C C12 A2H . . . F 3 59.448 -11.151 144.854 1 44.14 ? C12 A2H 1201 B 1 
HETATM 19 C C13 A2H . . . F 3 61.641 -11.67 144.009 1 42.61 ? C13 A2H 1201 B 1 
HETATM 20 C C14 A2H . . . F 3 61.421 -10.808 142.94 1 33.56 ? C14 A2H 1201 B 1 
HETATM 21 C C15 A2H . . . F 3 60.214 -10.123 142.835 1 36.53 ? C15 A2H 1201 B 1 
HETATM 22 C C16 A2H . . . F 3 59.219 -10.281 143.796 1 42.16 ? C16 A2H 1201 B 1 
HETATM 23 C C17 A2H . . . F 3 61.552 -12.143 147.253 1 34.11 ? C17 A2H 1201 B 1 
HETATM 24 N N18 A2H . . . F 3 61.353 -10.715 147.402 1 45.74 ? N18 A2H 1201 B 1 
HETATM 25 O O19 A2H . . . F 3 58.043 -9.596 143.649 1 42.07 ? O19 A2H 1201 B 1 
HETATM 26 O O1P A2H . . . F 3 52.346 -8.283 147.047 1 42.74 ? O1P A2H 1201 B 1 
HETATM 27 C C2' A2H . . . F 3 57.237 -10.464 147.609 1 38.6 ? C2' A2H 1201 B 1 
HETATM 28 O O2' A2H . . . F 3 58.56 -10.578 147.113 1 40.11 ? O2' A2H 1201 B 1 
HETATM 29 C C20 A2H . . . F 3 58.05 -8.31 143.036 1 41.92 ? C20 A2H 1201 B 1 
HETATM 30 C C21 A2H . . . F 3 56.836 -8.179 142.143 1 56.83 ? C21 A2H 1201 B 1 
HETATM 31 O O2P A2H . . . F 3 53.078 -6.759 145.17 1 70.53 ? O2P A2H 1201 B 1 
HETATM 32 C C3' A2H . . . F 3 56.355 -11.159 146.578 1 34.13 ? C3' A2H 1201 B 1 
HETATM 33 O O3' A2H . . . F 3 57.203 -11.895 145.718 1 36.51 ? O3' A2H 1201 B 1 
HETATM 34 O O3P A2H . . . F 3 51.189 -8.404 144.772 1 67.09 ? O3P A2H 1201 B 1 
HETATM 35 C C4' A2H . . . F 3 55.608 -10.044 145.837 1 41.31 ? C4' A2H 1201 B 1 
HETATM 36 O O4' A2H . . . F 3 56.107 -8.796 146.367 1 45.41 ? O4' A2H 1201 B 1 
HETATM 37 C C5' A2H . . . F 3 54.106 -10.064 145.969 1 46.31 ? C5' A2H 1201 B 1 
HETATM 38 O O5' A2H . . . F 3 53.487 -9.169 145.055 1 52.91 ? O5' A2H 1201 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           38 
#