data_6LRE # _model_server_result.job_id xC98pzwQO5BCQxq4ySphfg _model_server_result.datetime_utc '2025-08-31 16:03:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 6LRE # _exptl.entry_id 6LRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,3-bis(oxidanylidene)benzo[de]isoquinoline-6,7-dicarboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.72 _cell.angle_gamma 90 _cell.entry_id 6LRE _cell.length_a 213.607 _cell.length_b 47.536 _cell.length_c 87.758 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 234 A HIS 390 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc2 A SG CYS 240 A CYS 396 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 A SG CYS 241 A CYS 397 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc4 A SG CYS 248 A CYS 404 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc5 B NE2 HIS 234 B HIS 390 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc6 B SG CYS 240 B CYS 396 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc7 B SG CYS 241 B CYS 397 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc8 B SG CYS 248 B CYS 404 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? # _chem_comp.formula 'C14 H7 N O6' _chem_comp.formula_weight 285.208 _chem_comp.id EQL _chem_comp.mon_nstd_flag . _chem_comp.name '1,3-bis(oxidanylidene)benzo[de]isoquinoline-6,7-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C12 EQL doub 83 n n N1 C12 EQL sing 84 n n N1 C11 EQL sing 85 n n C12 C7 EQL sing 86 n n O1 C11 EQL doub 87 n n C11 C4 EQL sing 88 n n C7 C8 EQL doub 89 n y C7 C5 EQL sing 90 n y C8 C9 EQL sing 91 n y C4 C5 EQL doub 92 n y C4 C3 EQL sing 93 n y C5 C6 EQL sing 94 n y C3 C2 EQL doub 95 n y C9 C10 EQL doub 96 n y C6 C10 EQL sing 97 n y C6 C1 EQL doub 98 n y C10 C14 EQL sing 99 n n C2 C1 EQL sing 100 n y C1 C13 EQL sing 101 n n C14 O6 EQL doub 102 n n C14 O4 EQL sing 103 n n C13 O3 EQL doub 104 n n C13 O5 EQL sing 105 n n C8 H1 EQL sing 106 n n C9 H2 EQL sing 107 n n N1 H3 EQL sing 108 n n C3 H4 EQL sing 109 n n C2 H5 EQL sing 110 n n O4 H6 EQL sing 111 n n O5 H7 EQL sing 112 n n # _atom_sites.entry_id 6LRE _atom_sites.fract_transf_matrix[1][1] 0.004681 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002057 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 1 ZN ZN . D 3 EQL A 1 602 2 EQL DRG . E 2 ZN B 1 601 2 ZN ZN . F 3 EQL B 1 602 1 EQL DRG . G 4 HOH A 1 701 33 HOH HOH . G 4 HOH A 2 702 5 HOH HOH . G 4 HOH A 3 703 4 HOH HOH . G 4 HOH A 4 704 8 HOH HOH . G 4 HOH A 5 705 21 HOH HOH . G 4 HOH A 6 706 16 HOH HOH . G 4 HOH A 7 707 26 HOH HOH . G 4 HOH A 8 708 6 HOH HOH . G 4 HOH A 9 709 7 HOH HOH . G 4 HOH A 10 710 24 HOH HOH . G 4 HOH A 11 711 30 HOH HOH . G 4 HOH A 12 712 31 HOH HOH . G 4 HOH A 13 713 13 HOH HOH . G 4 HOH A 14 714 22 HOH HOH . H 4 HOH B 1 701 23 HOH HOH . H 4 HOH B 2 702 3 HOH HOH . H 4 HOH B 3 703 25 HOH HOH . H 4 HOH B 4 704 11 HOH HOH . H 4 HOH B 5 705 12 HOH HOH . H 4 HOH B 6 706 32 HOH HOH . H 4 HOH B 7 707 15 HOH HOH . H 4 HOH B 8 708 29 HOH HOH . H 4 HOH B 9 709 17 HOH HOH . H 4 HOH B 10 710 10 HOH HOH . H 4 HOH B 11 711 2 HOH HOH . H 4 HOH B 12 712 28 HOH HOH . H 4 HOH B 13 713 1 HOH HOH . H 4 HOH B 14 714 27 HOH HOH . H 4 HOH B 15 715 18 HOH HOH . H 4 HOH B 16 716 14 HOH HOH . H 4 HOH B 17 717 19 HOH HOH . H 4 HOH B 18 718 20 HOH HOH . H 4 HOH B 19 719 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 EQL . . . D 3 260.692 2.158 -63.491 1 33.23 ? C4 EQL 602 A 1 HETATM 2 C C14 EQL . . . D 3 262.096 0.811 -68.197 1 34.48 ? C14 EQL 602 A 1 HETATM 3 C C5 EQL . . . D 3 261.129 1.221 -64.449 1 32.46 ? C5 EQL 602 A 1 HETATM 4 C C6 EQL . . . D 3 261.346 1.617 -65.803 1 32.78 ? C6 EQL 602 A 1 HETATM 5 C C11 EQL . . . D 3 260.478 1.74 -62.097 1 35.13 ? C11 EQL 602 A 1 HETATM 6 C C7 EQL . . . D 3 261.348 -0.114 -64.052 1 34.88 ? C7 EQL 602 A 1 HETATM 7 C C8 EQL . . . D 3 261.771 -1.05 -64.964 1 31.45 ? C8 EQL 602 A 1 HETATM 8 C C9 EQL . . . D 3 261.991 -0.685 -66.301 1 31.41 ? C9 EQL 602 A 1 HETATM 9 C C10 EQL . . . D 3 261.795 0.61 -66.73 1 33.16 ? C10 EQL 602 A 1 HETATM 10 C C12 EQL . . . D 3 261.114 -0.512 -62.655 1 40.82 ? C12 EQL 602 A 1 HETATM 11 C C13 EQL . . . D 3 261.247 3.625 -67.507 1 43.43 ? C13 EQL 602 A 1 HETATM 12 N N1 EQL . . . D 3 260.699 0.431 -61.745 1 37.76 ? N1 EQL 602 A 1 HETATM 13 C C3 EQL . . . D 3 260.475 3.468 -63.849 1 38.9 ? C3 EQL 602 A 1 HETATM 14 C C1 EQL . . . D 3 261.099 2.996 -66.143 1 37.03 ? C1 EQL 602 A 1 HETATM 15 C C2 EQL . . . D 3 260.684 3.882 -65.173 1 41.23 ? C2 EQL 602 A 1 HETATM 16 O O1 EQL . . . D 3 260.107 2.532 -61.248 1 40.76 ? O1 EQL 602 A 1 HETATM 17 O O2 EQL . . . D 3 261.285 -1.662 -62.286 1 46.86 ? O2 EQL 602 A 1 HETATM 18 O O3 EQL . . . D 3 260.574 3.145 -68.437 1 46.25 ? O3 EQL 602 A 1 HETATM 19 O O4 EQL . . . D 3 262.963 1.653 -68.498 1 33.12 ? O4 EQL 602 A 1 HETATM 20 O O5 EQL . . . D 3 262.019 4.596 -67.614 1 49.19 ? O5 EQL 602 A 1 HETATM 21 O O6 EQL . . . D 3 261.469 0.114 -69.016 1 35.32 ? O6 EQL 602 A 1 # _model_server_stats.io_time_ms 505 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #