data_6LRG # _model_server_result.job_id Xjpigr7hzgc0x2gdUzsTYA _model_server_result.datetime_utc '2024-12-12 16:21:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lrg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 6LRG # _exptl.entry_id 6LRG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LRG _cell.length_a 186.895 _cell.length_b 201.141 _cell.length_c 99.436 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 186.895 0 149.154 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 6LRG _atom_sites.fract_transf_matrix[1][1] 0.005351 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 801 1 NAD NAD . D 3 ORN A 1 802 1 ORN ORN . E 3 ORN B 1 801 2 ORN ORN . F 4 HOH A 1 901 58 HOH HOH . F 4 HOH A 2 902 27 HOH HOH . F 4 HOH A 3 903 22 HOH HOH . F 4 HOH A 4 904 3 HOH HOH . F 4 HOH A 5 905 5 HOH HOH . F 4 HOH A 6 906 100 HOH HOH . F 4 HOH A 7 907 18 HOH HOH . F 4 HOH A 8 908 11 HOH HOH . F 4 HOH A 9 909 7 HOH HOH . F 4 HOH A 10 910 64 HOH HOH . F 4 HOH A 11 911 4 HOH HOH . F 4 HOH A 12 912 91 HOH HOH . F 4 HOH A 13 913 9 HOH HOH . F 4 HOH A 14 914 107 HOH HOH . F 4 HOH A 15 915 42 HOH HOH . F 4 HOH A 16 916 6 HOH HOH . F 4 HOH A 17 917 50 HOH HOH . F 4 HOH A 18 918 1 HOH HOH . F 4 HOH A 19 919 80 HOH HOH . F 4 HOH A 20 920 29 HOH HOH . F 4 HOH A 21 921 69 HOH HOH . F 4 HOH A 22 922 72 HOH HOH . F 4 HOH A 23 923 101 HOH HOH . F 4 HOH A 24 924 36 HOH HOH . F 4 HOH A 25 925 16 HOH HOH . F 4 HOH A 26 926 95 HOH HOH . F 4 HOH A 27 927 34 HOH HOH . F 4 HOH A 28 928 23 HOH HOH . F 4 HOH A 29 929 94 HOH HOH . F 4 HOH A 30 930 45 HOH HOH . F 4 HOH A 31 931 85 HOH HOH . F 4 HOH A 32 932 30 HOH HOH . F 4 HOH A 33 933 76 HOH HOH . F 4 HOH A 34 934 98 HOH HOH . F 4 HOH A 35 935 8 HOH HOH . F 4 HOH A 36 936 88 HOH HOH . F 4 HOH A 37 937 19 HOH HOH . F 4 HOH A 38 938 74 HOH HOH . F 4 HOH A 39 939 65 HOH HOH . F 4 HOH A 40 940 12 HOH HOH . F 4 HOH A 41 941 87 HOH HOH . F 4 HOH A 42 942 47 HOH HOH . F 4 HOH A 43 943 38 HOH HOH . F 4 HOH A 44 944 86 HOH HOH . F 4 HOH A 45 945 39 HOH HOH . F 4 HOH A 46 946 46 HOH HOH . F 4 HOH A 47 947 26 HOH HOH . F 4 HOH A 48 948 79 HOH HOH . F 4 HOH A 49 949 99 HOH HOH . F 4 HOH A 50 950 96 HOH HOH . F 4 HOH A 51 951 62 HOH HOH . F 4 HOH A 52 952 105 HOH HOH . F 4 HOH A 53 953 68 HOH HOH . F 4 HOH A 54 954 116 HOH HOH . F 4 HOH A 55 955 112 HOH HOH . F 4 HOH A 56 956 124 HOH HOH . F 4 HOH A 57 957 61 HOH HOH . F 4 HOH A 58 958 52 HOH HOH . F 4 HOH A 59 959 90 HOH HOH . F 4 HOH A 60 960 83 HOH HOH . F 4 HOH A 61 961 106 HOH HOH . F 4 HOH A 62 962 40 HOH HOH . F 4 HOH A 63 963 103 HOH HOH . F 4 HOH A 64 964 104 HOH HOH . F 4 HOH A 65 965 63 HOH HOH . F 4 HOH A 66 966 102 HOH HOH . F 4 HOH A 67 967 127 HOH HOH . F 4 HOH A 68 968 132 HOH HOH . F 4 HOH A 69 969 121 HOH HOH . F 4 HOH A 70 970 43 HOH HOH . F 4 HOH A 71 971 130 HOH HOH . F 4 HOH A 72 972 122 HOH HOH . F 4 HOH A 73 973 115 HOH HOH . F 4 HOH A 74 974 128 HOH HOH . F 4 HOH A 75 975 120 HOH HOH . F 4 HOH A 76 976 111 HOH HOH . F 4 HOH A 77 977 131 HOH HOH . F 4 HOH A 78 978 125 HOH HOH . F 4 HOH A 79 979 113 HOH HOH . G 4 HOH B 1 901 92 HOH HOH . G 4 HOH B 2 902 119 HOH HOH . G 4 HOH B 3 903 48 HOH HOH . G 4 HOH B 4 904 17 HOH HOH . G 4 HOH B 5 905 41 HOH HOH . G 4 HOH B 6 906 24 HOH HOH . G 4 HOH B 7 907 60 HOH HOH . G 4 HOH B 8 908 71 HOH HOH . G 4 HOH B 9 909 117 HOH HOH . G 4 HOH B 10 910 97 HOH HOH . G 4 HOH B 11 911 32 HOH HOH . G 4 HOH B 12 912 25 HOH HOH . G 4 HOH B 13 913 56 HOH HOH . G 4 HOH B 14 914 54 HOH HOH . G 4 HOH B 15 915 2 HOH HOH . G 4 HOH B 16 916 33 HOH HOH . G 4 HOH B 17 917 44 HOH HOH . G 4 HOH B 18 918 20 HOH HOH . G 4 HOH B 19 919 49 HOH HOH . G 4 HOH B 20 920 51 HOH HOH . G 4 HOH B 21 921 123 HOH HOH . G 4 HOH B 22 922 57 HOH HOH . G 4 HOH B 23 923 31 HOH HOH . G 4 HOH B 24 924 37 HOH HOH . G 4 HOH B 25 925 73 HOH HOH . G 4 HOH B 26 926 15 HOH HOH . G 4 HOH B 27 927 28 HOH HOH . G 4 HOH B 28 928 10 HOH HOH . G 4 HOH B 29 929 35 HOH HOH . G 4 HOH B 30 930 21 HOH HOH . G 4 HOH B 31 931 53 HOH HOH . G 4 HOH B 32 932 126 HOH HOH . G 4 HOH B 33 933 78 HOH HOH . G 4 HOH B 34 934 13 HOH HOH . G 4 HOH B 35 935 66 HOH HOH . G 4 HOH B 36 936 108 HOH HOH . G 4 HOH B 37 937 67 HOH HOH . G 4 HOH B 38 938 59 HOH HOH . G 4 HOH B 39 939 89 HOH HOH . G 4 HOH B 40 940 55 HOH HOH . G 4 HOH B 41 941 82 HOH HOH . G 4 HOH B 42 942 14 HOH HOH . G 4 HOH B 43 943 93 HOH HOH . G 4 HOH B 44 944 118 HOH HOH . G 4 HOH B 45 945 84 HOH HOH . G 4 HOH B 46 946 110 HOH HOH . G 4 HOH B 47 947 70 HOH HOH . G 4 HOH B 48 948 109 HOH HOH . G 4 HOH B 49 949 77 HOH HOH . G 4 HOH B 50 950 75 HOH HOH . G 4 HOH B 51 951 81 HOH HOH . G 4 HOH B 52 952 129 HOH HOH . G 4 HOH B 53 953 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 94.099 31.451 90.125 1 56.23 ? PA NAD 801 A 1 HETATM 2 O O1A NAD . . . C 2 95.43 31.146 90.733 1 49.07 ? O1A NAD 801 A 1 HETATM 3 O O2A NAD . . . C 2 93.982 32.974 89.963 1 61.97 ? O2A NAD 801 A 1 HETATM 4 O O5B NAD . . . C 2 93.894 30.834 88.663 1 52.26 ? O5B NAD 801 A 1 HETATM 5 C C5B NAD . . . C 2 94.258 29.485 88.373 1 48.19 ? C5B NAD 801 A 1 HETATM 6 C C4B NAD . . . C 2 94.812 29.383 86.918 1 46.52 ? C4B NAD 801 A 1 HETATM 7 O O4B NAD . . . C 2 93.974 28.315 86.144 1 37.8 ? O4B NAD 801 A 1 HETATM 8 C C3B NAD . . . C 2 94.678 30.456 86.276 1 46.93 ? C3B NAD 801 A 1 HETATM 9 O O3B NAD . . . C 2 95.998 30.995 85.921 1 50.21 ? O3B NAD 801 A 1 HETATM 10 C C2B NAD . . . C 2 93.874 30.109 84.855 1 46.88 ? C2B NAD 801 A 1 HETATM 11 O O2B NAD . . . C 2 94.543 30.814 83.77 1 46.85 ? O2B NAD 801 A 1 HETATM 12 C C1B NAD . . . C 2 93.961 28.846 84.699 1 46.47 ? C1B NAD 801 A 1 HETATM 13 N N9A NAD . . . C 2 92.762 28.24 84.024 1 41.37 ? N9A NAD 801 A 1 HETATM 14 C C8A NAD . . . C 2 91.453 28.526 83.806 1 41.91 ? C8A NAD 801 A 1 HETATM 15 N N7A NAD . . . C 2 90.899 27.484 83.122 1 43.79 ? N7A NAD 801 A 1 HETATM 16 C C5A NAD . . . C 2 91.865 26.551 82.925 1 43.73 ? C5A NAD 801 A 1 HETATM 17 C C6A NAD . . . C 2 91.837 25.299 82.288 1 35.5 ? C6A NAD 801 A 1 HETATM 18 N N6A NAD . . . C 2 90.84 24.529 81.619 1 33.4 ? N6A NAD 801 A 1 HETATM 19 N N1A NAD . . . C 2 92.963 24.538 82.222 1 32.78 ? N1A NAD 801 A 1 HETATM 20 C C2A NAD . . . C 2 94.133 24.991 82.782 1 33.44 ? C2A NAD 801 A 1 HETATM 21 N N3A NAD . . . C 2 94.172 26.233 83.418 1 39.92 ? N3A NAD 801 A 1 HETATM 22 C C4A NAD . . . C 2 93.029 27.009 83.485 1 44.19 ? C4A NAD 801 A 1 HETATM 23 O O3 NAD . . . C 2 92.941 30.903 91.154 1 56.46 ? O3 NAD 801 A 1 HETATM 24 P PN NAD . . . C 2 93.034 29.604 92.111 1 56.74 ? PN NAD 801 A 1 HETATM 25 O O1N NAD . . . C 2 92.228 28.513 91.461 1 51.87 ? O1N NAD 801 A 1 HETATM 26 O O2N NAD . . . C 2 94.46 29.086 92.338 1 51.42 ? O2N NAD 801 A 1 HETATM 27 O O5D NAD . . . C 2 92.35 29.974 93.5 1 53.72 ? O5D NAD 801 A 1 HETATM 28 C C5D NAD . . . C 2 92.535 31.255 94.086 1 52.21 ? C5D NAD 801 A 1 HETATM 29 C C4D NAD . . . C 2 92.216 31.132 95.602 1 50.27 ? C4D NAD 801 A 1 HETATM 30 O O4D NAD . . . C 2 90.953 31.434 95.834 1 48.46 ? O4D NAD 801 A 1 HETATM 31 C C3D NAD . . . C 2 92.416 29.667 96.002 1 53.14 ? C3D NAD 801 A 1 HETATM 32 O O3D NAD . . . C 2 93.289 29.502 97.057 1 49.26 ? O3D NAD 801 A 1 HETATM 33 C C2D NAD . . . C 2 90.967 29.173 96.339 1 47.79 ? C2D NAD 801 A 1 HETATM 34 O O2D NAD . . . C 2 90.945 28.058 97.343 1 41.5 ? O2D NAD 801 A 1 HETATM 35 C C1D NAD . . . C 2 90.334 30.221 96.743 1 50.35 ? C1D NAD 801 A 1 HETATM 36 N N1N NAD . . . C 2 88.916 29.937 96.531 1 48.17 ? N1N NAD 801 A 1 HETATM 37 C C2N NAD . . . C 2 88.075 29.471 97.566 1 38.59 ? C2N NAD 801 A 1 HETATM 38 C C3N NAD . . . C 2 86.711 29.167 97.282 1 46.26 ? C3N NAD 801 A 1 HETATM 39 C C7N NAD . . . C 2 85.678 28.62 98.322 1 39.29 ? C7N NAD 801 A 1 HETATM 40 O O7N NAD . . . C 2 85.895 28.615 99.53 1 34.66 ? O7N NAD 801 A 1 HETATM 41 N N7N NAD . . . C 2 84.454 28.048 97.825 1 40.48 ? N7N NAD 801 A 1 HETATM 42 C C4N NAD . . . C 2 86.242 29.328 95.982 1 51.97 ? C4N NAD 801 A 1 HETATM 43 C C5N NAD . . . C 2 87.093 29.767 94.972 1 55.8 ? C5N NAD 801 A 1 HETATM 44 C C6N NAD . . . C 2 88.436 30.075 95.246 1 50.6 ? C6N NAD 801 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #