data_6LRG
#
_model_server_result.job_id            G5C67xbYLaF0ynoQBuUu3Q 
_model_server_result.datetime_utc      '2024-12-12 02:01:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lrg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    6LRG 
#
_exptl.entry_id    6LRG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              132.161 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-ornithine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6LRG 
_cell.length_a            186.895 
_cell.length_b            201.141 
_cell.length_c            99.436 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LRG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_656 -x+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 186.895 0 149.154 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C5 H12 N2 O2' 
_chem_comp.formula_weight    132.161 
_chem_comp.id                ORN 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              L-ornithine 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ORN sing 312 n n 
N H ORN sing 313 n n 
N H2 ORN sing 314 n n 
CA CB ORN sing 315 n n 
CA C ORN sing 316 n n 
CA HA ORN sing 317 n n 
CB CG ORN sing 318 n n 
CB HB2 ORN sing 319 n n 
CB HB3 ORN sing 320 n n 
CG CD ORN sing 321 n n 
CG HG2 ORN sing 322 n n 
CG HG3 ORN sing 323 n n 
CD NE ORN sing 324 n n 
CD HD2 ORN sing 325 n n 
CD HD3 ORN sing 326 n n 
NE HE1 ORN sing 327 n n 
NE HE2 ORN sing 328 n n 
C O ORN doub 329 n n 
C OXT ORN sing 330 n n 
OXT HXT ORN sing 331 n n 
#
_atom_sites.entry_id                     6LRG 
_atom_sites.fract_transf_matrix[1][1]    0.005351 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004972 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010057 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 801 1 NAD NAD . 
D 3 ORN A 1 802 1 ORN ORN . 
E 3 ORN B 1 801 2 ORN ORN . 
F 4 HOH A 1 901 58 HOH HOH . 
F 4 HOH A 2 902 27 HOH HOH . 
F 4 HOH A 3 903 22 HOH HOH . 
F 4 HOH A 4 904 3 HOH HOH . 
F 4 HOH A 5 905 5 HOH HOH . 
F 4 HOH A 6 906 100 HOH HOH . 
F 4 HOH A 7 907 18 HOH HOH . 
F 4 HOH A 8 908 11 HOH HOH . 
F 4 HOH A 9 909 7 HOH HOH . 
F 4 HOH A 10 910 64 HOH HOH . 
F 4 HOH A 11 911 4 HOH HOH . 
F 4 HOH A 12 912 91 HOH HOH . 
F 4 HOH A 13 913 9 HOH HOH . 
F 4 HOH A 14 914 107 HOH HOH . 
F 4 HOH A 15 915 42 HOH HOH . 
F 4 HOH A 16 916 6 HOH HOH . 
F 4 HOH A 17 917 50 HOH HOH . 
F 4 HOH A 18 918 1 HOH HOH . 
F 4 HOH A 19 919 80 HOH HOH . 
F 4 HOH A 20 920 29 HOH HOH . 
F 4 HOH A 21 921 69 HOH HOH . 
F 4 HOH A 22 922 72 HOH HOH . 
F 4 HOH A 23 923 101 HOH HOH . 
F 4 HOH A 24 924 36 HOH HOH . 
F 4 HOH A 25 925 16 HOH HOH . 
F 4 HOH A 26 926 95 HOH HOH . 
F 4 HOH A 27 927 34 HOH HOH . 
F 4 HOH A 28 928 23 HOH HOH . 
F 4 HOH A 29 929 94 HOH HOH . 
F 4 HOH A 30 930 45 HOH HOH . 
F 4 HOH A 31 931 85 HOH HOH . 
F 4 HOH A 32 932 30 HOH HOH . 
F 4 HOH A 33 933 76 HOH HOH . 
F 4 HOH A 34 934 98 HOH HOH . 
F 4 HOH A 35 935 8 HOH HOH . 
F 4 HOH A 36 936 88 HOH HOH . 
F 4 HOH A 37 937 19 HOH HOH . 
F 4 HOH A 38 938 74 HOH HOH . 
F 4 HOH A 39 939 65 HOH HOH . 
F 4 HOH A 40 940 12 HOH HOH . 
F 4 HOH A 41 941 87 HOH HOH . 
F 4 HOH A 42 942 47 HOH HOH . 
F 4 HOH A 43 943 38 HOH HOH . 
F 4 HOH A 44 944 86 HOH HOH . 
F 4 HOH A 45 945 39 HOH HOH . 
F 4 HOH A 46 946 46 HOH HOH . 
F 4 HOH A 47 947 26 HOH HOH . 
F 4 HOH A 48 948 79 HOH HOH . 
F 4 HOH A 49 949 99 HOH HOH . 
F 4 HOH A 50 950 96 HOH HOH . 
F 4 HOH A 51 951 62 HOH HOH . 
F 4 HOH A 52 952 105 HOH HOH . 
F 4 HOH A 53 953 68 HOH HOH . 
F 4 HOH A 54 954 116 HOH HOH . 
F 4 HOH A 55 955 112 HOH HOH . 
F 4 HOH A 56 956 124 HOH HOH . 
F 4 HOH A 57 957 61 HOH HOH . 
F 4 HOH A 58 958 52 HOH HOH . 
F 4 HOH A 59 959 90 HOH HOH . 
F 4 HOH A 60 960 83 HOH HOH . 
F 4 HOH A 61 961 106 HOH HOH . 
F 4 HOH A 62 962 40 HOH HOH . 
F 4 HOH A 63 963 103 HOH HOH . 
F 4 HOH A 64 964 104 HOH HOH . 
F 4 HOH A 65 965 63 HOH HOH . 
F 4 HOH A 66 966 102 HOH HOH . 
F 4 HOH A 67 967 127 HOH HOH . 
F 4 HOH A 68 968 132 HOH HOH . 
F 4 HOH A 69 969 121 HOH HOH . 
F 4 HOH A 70 970 43 HOH HOH . 
F 4 HOH A 71 971 130 HOH HOH . 
F 4 HOH A 72 972 122 HOH HOH . 
F 4 HOH A 73 973 115 HOH HOH . 
F 4 HOH A 74 974 128 HOH HOH . 
F 4 HOH A 75 975 120 HOH HOH . 
F 4 HOH A 76 976 111 HOH HOH . 
F 4 HOH A 77 977 131 HOH HOH . 
F 4 HOH A 78 978 125 HOH HOH . 
F 4 HOH A 79 979 113 HOH HOH . 
G 4 HOH B 1 901 92 HOH HOH . 
G 4 HOH B 2 902 119 HOH HOH . 
G 4 HOH B 3 903 48 HOH HOH . 
G 4 HOH B 4 904 17 HOH HOH . 
G 4 HOH B 5 905 41 HOH HOH . 
G 4 HOH B 6 906 24 HOH HOH . 
G 4 HOH B 7 907 60 HOH HOH . 
G 4 HOH B 8 908 71 HOH HOH . 
G 4 HOH B 9 909 117 HOH HOH . 
G 4 HOH B 10 910 97 HOH HOH . 
G 4 HOH B 11 911 32 HOH HOH . 
G 4 HOH B 12 912 25 HOH HOH . 
G 4 HOH B 13 913 56 HOH HOH . 
G 4 HOH B 14 914 54 HOH HOH . 
G 4 HOH B 15 915 2 HOH HOH . 
G 4 HOH B 16 916 33 HOH HOH . 
G 4 HOH B 17 917 44 HOH HOH . 
G 4 HOH B 18 918 20 HOH HOH . 
G 4 HOH B 19 919 49 HOH HOH . 
G 4 HOH B 20 920 51 HOH HOH . 
G 4 HOH B 21 921 123 HOH HOH . 
G 4 HOH B 22 922 57 HOH HOH . 
G 4 HOH B 23 923 31 HOH HOH . 
G 4 HOH B 24 924 37 HOH HOH . 
G 4 HOH B 25 925 73 HOH HOH . 
G 4 HOH B 26 926 15 HOH HOH . 
G 4 HOH B 27 927 28 HOH HOH . 
G 4 HOH B 28 928 10 HOH HOH . 
G 4 HOH B 29 929 35 HOH HOH . 
G 4 HOH B 30 930 21 HOH HOH . 
G 4 HOH B 31 931 53 HOH HOH . 
G 4 HOH B 32 932 126 HOH HOH . 
G 4 HOH B 33 933 78 HOH HOH . 
G 4 HOH B 34 934 13 HOH HOH . 
G 4 HOH B 35 935 66 HOH HOH . 
G 4 HOH B 36 936 108 HOH HOH . 
G 4 HOH B 37 937 67 HOH HOH . 
G 4 HOH B 38 938 59 HOH HOH . 
G 4 HOH B 39 939 89 HOH HOH . 
G 4 HOH B 40 940 55 HOH HOH . 
G 4 HOH B 41 941 82 HOH HOH . 
G 4 HOH B 42 942 14 HOH HOH . 
G 4 HOH B 43 943 93 HOH HOH . 
G 4 HOH B 44 944 118 HOH HOH . 
G 4 HOH B 45 945 84 HOH HOH . 
G 4 HOH B 46 946 110 HOH HOH . 
G 4 HOH B 47 947 70 HOH HOH . 
G 4 HOH B 48 948 109 HOH HOH . 
G 4 HOH B 49 949 77 HOH HOH . 
G 4 HOH B 50 950 75 HOH HOH . 
G 4 HOH B 51 951 81 HOH HOH . 
G 4 HOH B 52 952 129 HOH HOH . 
G 4 HOH B 53 953 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ORN . . . D 3 60.85 5.695 65.95 1 28.12 ? N ORN 802 A 1 
HETATM 2 C CA ORN . . . D 3 60.277 5.628 67.247 1 20.12 ? CA ORN 802 A 1 
HETATM 3 C CB ORN . . . D 3 61.108 4.671 68.086 1 25.15 ? CB ORN 802 A 1 
HETATM 4 C CG ORN . . . D 3 60.624 4.474 69.518 1 22.49 ? CG ORN 802 A 1 
HETATM 5 C CD ORN . . . D 3 60.947 3.056 69.932 1 24.35 ? CD ORN 802 A 1 
HETATM 6 N NE ORN . . . D 3 61.622 3.001 71.209 1 31.62 ? NE ORN 802 A 1 
HETATM 7 C C ORN . . . D 3 60.142 7.023 67.813 1 20.75 ? C ORN 802 A 1 
HETATM 8 O O ORN . . . D 3 60.853 7.982 67.381 1 20.13 ? O ORN 802 A 1 
HETATM 9 O OXT ORN . . . D 3 59.267 7.224 68.705 1 24.08 ? OXT ORN 802 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#