data_6LRI # _model_server_result.job_id bNLi8v7AifHsdOBd9UOvwg _model_server_result.datetime_utc '2024-12-23 01:35:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6LRI # _exptl.entry_id 6LRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.269 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[5-(2-hydroxy-2-oxoethyl)-3-oxidanylidene-[1,2,4]triazino[2,3-a]benzimidazol-2-yl]propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.25 _cell.angle_gamma 90 _cell.entry_id 6LRI _cell.length_a 216.15 _cell.length_b 48.292 _cell.length_c 88.999 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 234 A HIS 390 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc2 A SG CYS 240 A CYS 396 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc3 A SG CYS 241 A CYS 397 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc4 A SG CYS 248 A CYS 404 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc5 B NE2 HIS 234 B HIS 390 1_555 F ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc6 B SG CYS 240 B CYS 396 1_555 F ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc7 B SG CYS 241 B CYS 397 1_555 F ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc8 B SG CYS 248 B CYS 404 1_555 F ZN ZN . B ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C14 H12 N4 O5' _chem_comp.formula_weight 316.269 _chem_comp.id EQR _chem_comp.mon_nstd_flag . _chem_comp.name '3-[5-(2-hydroxy-2-oxoethyl)-3-oxidanylidene-[1,2,4]triazino[2,3-a]benzimidazol-2-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C14 EQR doub 83 n n C14 O5 EQR sing 84 n n C14 C13 EQR sing 85 n n C13 N1 EQR sing 86 n n N3 C8 EQR sing 87 n n N3 C3 EQR doub 88 n n O3 C8 EQR doub 89 n n N1 C3 EQR sing 90 n n N1 C2 EQR sing 91 n n C8 C9 EQR sing 92 n n C3 N2 EQR sing 93 n n C2 C7 EQR sing 94 n y C2 C1 EQR doub 95 n y C7 C6 EQR doub 96 n y N2 C1 EQR sing 97 n n N2 N4 EQR sing 98 n n C9 N4 EQR doub 99 n n C9 C10 EQR sing 100 n n C1 C4 EQR sing 101 n y C6 C5 EQR sing 102 n y C10 C11 EQR sing 103 n n C4 C5 EQR doub 104 n y C11 C12 EQR sing 105 n n O1 C12 EQR doub 106 n n C12 O2 EQR sing 107 n n C4 H1 EQR sing 108 n n C5 H2 EQR sing 109 n n C6 H3 EQR sing 110 n n C11 H4 EQR sing 111 n n C11 H5 EQR sing 112 n n C7 H6 EQR sing 113 n n C10 H7 EQR sing 114 n n C10 H8 EQR sing 115 n n C13 H9 EQR sing 116 n n C13 H10 EQR sing 117 n n O2 H12 EQR sing 118 n n O5 H13 EQR sing 119 n n # _atom_sites.entry_id 6LRI _atom_sites.fract_transf_matrix[1][1] 0.004626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001893 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01214 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EQR A 1 601 1 EQR DRG . D 3 ZN A 1 602 1 ZN ZN . E 2 EQR B 1 601 2 EQR DRG . F 3 ZN B 1 602 2 ZN ZN . G 4 HOH A 1 701 38 HOH HOH . G 4 HOH A 2 702 40 HOH HOH . G 4 HOH A 3 703 28 HOH HOH . G 4 HOH A 4 704 4 HOH HOH . G 4 HOH A 5 705 3 HOH HOH . G 4 HOH A 6 706 18 HOH HOH . G 4 HOH A 7 707 27 HOH HOH . G 4 HOH A 8 708 20 HOH HOH . G 4 HOH A 9 709 56 HOH HOH . G 4 HOH A 10 710 51 HOH HOH . G 4 HOH A 11 711 46 HOH HOH . G 4 HOH A 12 712 7 HOH HOH . G 4 HOH A 13 713 15 HOH HOH . G 4 HOH A 14 714 52 HOH HOH . G 4 HOH A 15 715 42 HOH HOH . G 4 HOH A 16 716 23 HOH HOH . G 4 HOH A 17 717 12 HOH HOH . G 4 HOH A 18 718 36 HOH HOH . G 4 HOH A 19 719 10 HOH HOH . G 4 HOH A 20 720 44 HOH HOH . G 4 HOH A 21 721 49 HOH HOH . G 4 HOH A 22 722 30 HOH HOH . G 4 HOH A 23 723 13 HOH HOH . G 4 HOH A 24 724 48 HOH HOH . G 4 HOH A 25 725 54 HOH HOH . G 4 HOH A 26 726 6 HOH HOH . G 4 HOH A 27 727 34 HOH HOH . H 4 HOH B 1 701 35 HOH HOH . H 4 HOH B 2 702 47 HOH HOH . H 4 HOH B 3 703 22 HOH HOH . H 4 HOH B 4 704 17 HOH HOH . H 4 HOH B 5 705 41 HOH HOH . H 4 HOH B 6 706 31 HOH HOH . H 4 HOH B 7 707 26 HOH HOH . H 4 HOH B 8 708 29 HOH HOH . H 4 HOH B 9 709 37 HOH HOH . H 4 HOH B 10 710 5 HOH HOH . H 4 HOH B 11 711 11 HOH HOH . H 4 HOH B 12 712 1 HOH HOH . H 4 HOH B 13 713 16 HOH HOH . H 4 HOH B 14 714 19 HOH HOH . H 4 HOH B 15 715 21 HOH HOH . H 4 HOH B 16 716 8 HOH HOH . H 4 HOH B 17 717 39 HOH HOH . H 4 HOH B 18 718 50 HOH HOH . H 4 HOH B 19 719 24 HOH HOH . H 4 HOH B 20 720 9 HOH HOH . H 4 HOH B 21 721 2 HOH HOH . H 4 HOH B 22 722 53 HOH HOH . H 4 HOH B 23 723 55 HOH HOH . H 4 HOH B 24 724 45 HOH HOH . H 4 HOH B 25 725 25 HOH HOH . H 4 HOH B 26 726 14 HOH HOH . H 4 HOH B 27 727 43 HOH HOH . H 4 HOH B 28 728 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 EQR . . . E 2 -45.358 -2.417 61.737 1 32.93 ? C4 EQR 601 B 1 HETATM 2 C C14 EQR . . . E 2 -46.693 -2.368 67.705 1 58.58 ? C14 EQR 601 B 1 HETATM 3 C C5 EQR . . . E 2 -45.273 -3.757 61.398 1 32.98 ? C5 EQR 601 B 1 HETATM 4 C C6 EQR . . . E 2 -45.436 -4.759 62.353 1 48.17 ? C6 EQR 601 B 1 HETATM 5 C C11 EQR . . . E 2 -44.471 3.036 62.813 1 55.78 ? C11 EQR 601 B 1 HETATM 6 C C7 EQR . . . E 2 -45.687 -4.452 63.673 1 52.97 ? C7 EQR 601 B 1 HETATM 7 C C8 EQR . . . E 2 -46.104 1.126 65.455 1 46.74 ? C8 EQR 601 B 1 HETATM 8 C C9 EQR . . . E 2 -45.849 1.362 64.079 1 48.83 ? C9 EQR 601 B 1 HETATM 9 C C10 EQR . . . E 2 -45.771 2.769 63.553 1 48.14 ? C10 EQR 601 B 1 HETATM 10 C C12 EQR . . . E 2 -44.561 2.861 61.306 1 59.97 ? C12 EQR 601 B 1 HETATM 11 C C13 EQR . . . E 2 -46.231 -3.215 66.521 1 51.45 ? C13 EQR 601 B 1 HETATM 12 N N1 EQR . . . E 2 -46.015 -2.494 65.274 1 49.79 ? N1 EQR 601 B 1 HETATM 13 N N2 EQR . . . E 2 -45.755 -0.888 63.743 1 49.19 ? N2 EQR 601 B 1 HETATM 14 C C3 EQR . . . E 2 -45.997 -1.099 65.063 1 50.31 ? C3 EQR 601 B 1 HETATM 15 N N3 EQR . . . E 2 -46.176 -0.108 65.949 1 49.09 ? N3 EQR 601 B 1 HETATM 16 C C1 EQR . . . E 2 -45.61 -2.109 63.064 1 42.19 ? C1 EQR 601 B 1 HETATM 17 C C2 EQR . . . E 2 -45.773 -3.11 64.021 1 50.13 ? C2 EQR 601 B 1 HETATM 18 N N4 EQR . . . E 2 -45.677 0.372 63.223 1 50.9 ? N4 EQR 601 B 1 HETATM 19 O O1 EQR . . . E 2 -43.511 2.956 60.639 1 62.18 ? O1 EQR 601 B 1 HETATM 20 O O2 EQR . . . E 2 -45.68 2.634 60.804 1 56.96 ? O2 EQR 601 B 1 HETATM 21 O O3 EQR . . . E 2 -46.259 2.056 66.214 1 48.74 ? O3 EQR 601 B 1 HETATM 22 O O4 EQR . . . E 2 -47.791 -1.787 67.591 1 53.85 ? O4 EQR 601 B 1 HETATM 23 O O5 EQR . . . E 2 -45.93 -2.329 68.691 1 69.4 ? O5 EQR 601 B 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 23 #