data_6LS1 # _model_server_result.job_id UDLFT6eVCj03tNLb0DTqSw _model_server_result.datetime_utc '2024-11-23 23:21:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ls1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6LS1 # _exptl.entry_id 6LS1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LS1 _cell.length_a 97.76 _cell.length_b 97.76 _cell.length_c 68.91 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 5 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf3 A SG CYS 47 A CYS 47 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 B SG CYS 5 B CYS 5 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? disulf ? disulf5 B SG CYS 7 B CYS 7 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf6 B SG CYS 47 B CYS 47 1_555 B SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C10 H13 N5 O5' _chem_comp.formula_weight 283.241 _chem_comp.id GMP _chem_comp.mon_nstd_flag . _chem_comp.name GUANOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' GMP sing 129 n n O5' HO5' GMP sing 130 n n C5' C4' GMP sing 131 n n C5' "H5'1" GMP sing 132 n n C5' "H5'2" GMP sing 133 n n C4' O4' GMP sing 134 n n C4' C3' GMP sing 135 n n C4' H4' GMP sing 136 n n O4' C1' GMP sing 137 n n C3' O3' GMP sing 138 n n C3' C2' GMP sing 139 n n C3' H3' GMP sing 140 n n O3' HO3' GMP sing 141 n n C2' O2' GMP sing 142 n n C2' C1' GMP sing 143 n n C2' H2' GMP sing 144 n n O2' HO2' GMP sing 145 n n C1' N9 GMP sing 146 n n C1' H1' GMP sing 147 n n N9 C8 GMP sing 148 n y N9 C4 GMP sing 149 n y C8 N7 GMP doub 150 n y C8 H8 GMP sing 151 n n N7 C5 GMP sing 152 n y C5 C6 GMP sing 153 n n C5 C4 GMP doub 154 n y C6 O6 GMP doub 155 n n C6 N1 GMP sing 156 n n N1 C2 GMP sing 157 n n N1 HN1 GMP sing 158 n n C2 N2 GMP sing 159 n n C2 N3 GMP doub 160 n n N2 HN21 GMP sing 161 n n N2 HN22 GMP sing 162 n n N3 C4 GMP sing 163 n n # _atom_sites.entry_id 6LS1 _atom_sites.fract_transf_matrix[1][1] 0.010229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GMP A 1 201 1 GMP GMP . D 3 PEG A 1 202 1 PEG PEG . E 4 SO4 B 1 201 1 SO4 SO4 . F 5 HOH A 1 301 188 HOH HOH . F 5 HOH A 2 302 86 HOH HOH . F 5 HOH A 3 303 183 HOH HOH . F 5 HOH A 4 304 56 HOH HOH . F 5 HOH A 5 305 150 HOH HOH . F 5 HOH A 6 306 210 HOH HOH . F 5 HOH A 7 307 30 HOH HOH . F 5 HOH A 8 308 77 HOH HOH . F 5 HOH A 9 309 112 HOH HOH . F 5 HOH A 10 310 195 HOH HOH . F 5 HOH A 11 311 146 HOH HOH . F 5 HOH A 12 312 153 HOH HOH . F 5 HOH A 13 313 226 HOH HOH . F 5 HOH A 14 314 100 HOH HOH . F 5 HOH A 15 315 21 HOH HOH . F 5 HOH A 16 316 145 HOH HOH . F 5 HOH A 17 317 67 HOH HOH . F 5 HOH A 18 318 88 HOH HOH . F 5 HOH A 19 319 105 HOH HOH . F 5 HOH A 20 320 103 HOH HOH . F 5 HOH A 21 321 42 HOH HOH . F 5 HOH A 22 322 66 HOH HOH . F 5 HOH A 23 323 113 HOH HOH . F 5 HOH A 24 324 85 HOH HOH . F 5 HOH A 25 325 53 HOH HOH . F 5 HOH A 26 326 126 HOH HOH . F 5 HOH A 27 327 52 HOH HOH . F 5 HOH A 28 328 7 HOH HOH . F 5 HOH A 29 329 119 HOH HOH . F 5 HOH A 30 330 14 HOH HOH . F 5 HOH A 31 331 141 HOH HOH . F 5 HOH A 32 332 1 HOH HOH . F 5 HOH A 33 333 70 HOH HOH . F 5 HOH A 34 334 8 HOH HOH . F 5 HOH A 35 335 205 HOH HOH . F 5 HOH A 36 336 33 HOH HOH . F 5 HOH A 37 337 130 HOH HOH . F 5 HOH A 38 338 121 HOH HOH . F 5 HOH A 39 339 78 HOH HOH . F 5 HOH A 40 340 12 HOH HOH . F 5 HOH A 41 341 95 HOH HOH . F 5 HOH A 42 342 55 HOH HOH . F 5 HOH A 43 343 34 HOH HOH . F 5 HOH A 44 344 213 HOH HOH . F 5 HOH A 45 345 191 HOH HOH . F 5 HOH A 46 346 22 HOH HOH . F 5 HOH A 47 347 134 HOH HOH . F 5 HOH A 48 348 71 HOH HOH . F 5 HOH A 49 349 50 HOH HOH . F 5 HOH A 50 350 64 HOH HOH . F 5 HOH A 51 351 16 HOH HOH . F 5 HOH A 52 352 114 HOH HOH . F 5 HOH A 53 353 27 HOH HOH . F 5 HOH A 54 354 211 HOH HOH . F 5 HOH A 55 355 131 HOH HOH . F 5 HOH A 56 356 60 HOH HOH . F 5 HOH A 57 357 116 HOH HOH . F 5 HOH A 58 358 25 HOH HOH . F 5 HOH A 59 359 197 HOH HOH . F 5 HOH A 60 360 133 HOH HOH . F 5 HOH A 61 361 125 HOH HOH . F 5 HOH A 62 362 2 HOH HOH . F 5 HOH A 63 363 102 HOH HOH . F 5 HOH A 64 364 143 HOH HOH . F 5 HOH A 65 365 220 HOH HOH . F 5 HOH A 66 366 51 HOH HOH . F 5 HOH A 67 367 36 HOH HOH . F 5 HOH A 68 368 227 HOH HOH . F 5 HOH A 69 369 161 HOH HOH . F 5 HOH A 70 370 24 HOH HOH . F 5 HOH A 71 371 108 HOH HOH . F 5 HOH A 72 372 127 HOH HOH . F 5 HOH A 73 373 106 HOH HOH . F 5 HOH A 74 374 28 HOH HOH . F 5 HOH A 75 375 142 HOH HOH . F 5 HOH A 76 376 46 HOH HOH . F 5 HOH A 77 377 94 HOH HOH . F 5 HOH A 78 378 132 HOH HOH . F 5 HOH A 79 379 41 HOH HOH . F 5 HOH A 80 380 63 HOH HOH . F 5 HOH A 81 381 98 HOH HOH . F 5 HOH A 82 382 219 HOH HOH . F 5 HOH A 83 383 68 HOH HOH . F 5 HOH A 84 384 200 HOH HOH . F 5 HOH A 85 385 203 HOH HOH . F 5 HOH A 86 386 40 HOH HOH . F 5 HOH A 87 387 171 HOH HOH . F 5 HOH A 88 388 212 HOH HOH . F 5 HOH A 89 389 228 HOH HOH . F 5 HOH A 90 390 217 HOH HOH . F 5 HOH A 91 391 59 HOH HOH . F 5 HOH A 92 392 156 HOH HOH . F 5 HOH A 93 393 96 HOH HOH . F 5 HOH A 94 394 173 HOH HOH . F 5 HOH A 95 395 154 HOH HOH . F 5 HOH A 96 396 190 HOH HOH . F 5 HOH A 97 397 233 HOH HOH . F 5 HOH A 98 398 198 HOH HOH . F 5 HOH A 99 399 168 HOH HOH . F 5 HOH A 100 400 118 HOH HOH . F 5 HOH A 101 401 83 HOH HOH . F 5 HOH A 102 402 181 HOH HOH . F 5 HOH A 103 403 207 HOH HOH . F 5 HOH A 104 404 189 HOH HOH . F 5 HOH A 105 405 172 HOH HOH . F 5 HOH A 106 406 158 HOH HOH . F 5 HOH A 107 407 164 HOH HOH . F 5 HOH A 108 408 174 HOH HOH . F 5 HOH A 109 409 209 HOH HOH . F 5 HOH A 110 410 199 HOH HOH . F 5 HOH A 111 411 93 HOH HOH . F 5 HOH A 112 412 179 HOH HOH . F 5 HOH A 113 413 170 HOH HOH . F 5 HOH A 114 414 187 HOH HOH . F 5 HOH A 115 415 208 HOH HOH . G 5 HOH B 1 301 26 HOH HOH . G 5 HOH B 2 302 128 HOH HOH . G 5 HOH B 3 303 166 HOH HOH . G 5 HOH B 4 304 120 HOH HOH . G 5 HOH B 5 305 109 HOH HOH . G 5 HOH B 6 306 178 HOH HOH . G 5 HOH B 7 307 231 HOH HOH . G 5 HOH B 8 308 160 HOH HOH . G 5 HOH B 9 309 79 HOH HOH . G 5 HOH B 10 310 101 HOH HOH . G 5 HOH B 11 311 232 HOH HOH . G 5 HOH B 12 312 201 HOH HOH . G 5 HOH B 13 313 129 HOH HOH . G 5 HOH B 14 314 184 HOH HOH . G 5 HOH B 15 315 65 HOH HOH . G 5 HOH B 16 316 3 HOH HOH . G 5 HOH B 17 317 45 HOH HOH . G 5 HOH B 18 318 115 HOH HOH . G 5 HOH B 19 319 31 HOH HOH . G 5 HOH B 20 320 140 HOH HOH . G 5 HOH B 21 321 107 HOH HOH . G 5 HOH B 22 322 39 HOH HOH . G 5 HOH B 23 323 43 HOH HOH . G 5 HOH B 24 324 58 HOH HOH . G 5 HOH B 25 325 229 HOH HOH . G 5 HOH B 26 326 99 HOH HOH . G 5 HOH B 27 327 73 HOH HOH . G 5 HOH B 28 328 82 HOH HOH . G 5 HOH B 29 329 13 HOH HOH . G 5 HOH B 30 330 47 HOH HOH . G 5 HOH B 31 331 163 HOH HOH . G 5 HOH B 32 332 152 HOH HOH . G 5 HOH B 33 333 111 HOH HOH . G 5 HOH B 34 334 138 HOH HOH . G 5 HOH B 35 335 69 HOH HOH . G 5 HOH B 36 336 57 HOH HOH . G 5 HOH B 37 337 18 HOH HOH . G 5 HOH B 38 338 89 HOH HOH . G 5 HOH B 39 339 151 HOH HOH . G 5 HOH B 40 340 124 HOH HOH . G 5 HOH B 41 341 225 HOH HOH . G 5 HOH B 42 342 104 HOH HOH . G 5 HOH B 43 343 155 HOH HOH . G 5 HOH B 44 344 80 HOH HOH . G 5 HOH B 45 345 61 HOH HOH . G 5 HOH B 46 346 74 HOH HOH . G 5 HOH B 47 347 32 HOH HOH . G 5 HOH B 48 348 139 HOH HOH . G 5 HOH B 49 349 20 HOH HOH . G 5 HOH B 50 350 91 HOH HOH . G 5 HOH B 51 351 123 HOH HOH . G 5 HOH B 52 352 37 HOH HOH . G 5 HOH B 53 353 137 HOH HOH . G 5 HOH B 54 354 38 HOH HOH . G 5 HOH B 55 355 84 HOH HOH . G 5 HOH B 56 356 218 HOH HOH . G 5 HOH B 57 357 159 HOH HOH . G 5 HOH B 58 358 44 HOH HOH . G 5 HOH B 59 359 144 HOH HOH . G 5 HOH B 60 360 35 HOH HOH . G 5 HOH B 61 361 136 HOH HOH . G 5 HOH B 62 362 49 HOH HOH . G 5 HOH B 63 363 162 HOH HOH . G 5 HOH B 64 364 193 HOH HOH . G 5 HOH B 65 365 215 HOH HOH . G 5 HOH B 66 366 72 HOH HOH . G 5 HOH B 67 367 75 HOH HOH . G 5 HOH B 68 368 54 HOH HOH . G 5 HOH B 69 369 223 HOH HOH . G 5 HOH B 70 370 76 HOH HOH . G 5 HOH B 71 371 87 HOH HOH . G 5 HOH B 72 372 214 HOH HOH . G 5 HOH B 73 373 110 HOH HOH . G 5 HOH B 74 374 81 HOH HOH . G 5 HOH B 75 375 90 HOH HOH . G 5 HOH B 76 376 192 HOH HOH . G 5 HOH B 77 377 157 HOH HOH . G 5 HOH B 78 378 196 HOH HOH . G 5 HOH B 79 379 234 HOH HOH . G 5 HOH B 80 380 177 HOH HOH . G 5 HOH B 81 381 175 HOH HOH . G 5 HOH B 82 382 206 HOH HOH . G 5 HOH B 83 383 48 HOH HOH . G 5 HOH B 84 384 169 HOH HOH . G 5 HOH B 85 385 180 HOH HOH . G 5 HOH B 86 386 182 HOH HOH . G 5 HOH B 87 387 216 HOH HOH . G 5 HOH B 88 388 165 HOH HOH . G 5 HOH B 89 389 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' GMP . . . C 2 6.143 -5.85 -13.346 1 15.72 ? O5' GMP 201 A 1 HETATM 2 C C5' GMP . . . C 2 4.859 -6.513 -13.368 1 15.6 ? C5' GMP 201 A 1 HETATM 3 C C4' GMP . . . C 2 4.808 -7.582 -14.439 1 15.49 ? C4' GMP 201 A 1 HETATM 4 O O4' GMP . . . C 2 4.852 -6.926 -15.735 1 15.25 ? O4' GMP 201 A 1 HETATM 5 C C3' GMP . . . C 2 5.975 -8.591 -14.423 1 15.5 ? C3' GMP 201 A 1 HETATM 6 O O3' GMP . . . C 2 5.509 -9.873 -14.893 1 15.72 ? O3' GMP 201 A 1 HETATM 7 C C2' GMP . . . C 2 6.933 -7.992 -15.456 1 15.23 ? C2' GMP 201 A 1 HETATM 8 O O2' GMP . . . C 2 7.802 -8.943 -16.011 1 15.37 ? O2' GMP 201 A 1 HETATM 9 C C1' GMP . . . C 2 5.929 -7.477 -16.492 1 15 ? C1' GMP 201 A 1 HETATM 10 N N9 GMP . . . C 2 6.409 -6.489 -17.445 1 14.45 ? N9 GMP 201 A 1 HETATM 11 C C8 GMP . . . C 2 6.502 -6.603 -18.825 1 14.23 ? C8 GMP 201 A 1 HETATM 12 N N7 GMP . . . C 2 6.967 -5.454 -19.349 1 14.09 ? N7 GMP 201 A 1 HETATM 13 C C5 GMP . . . C 2 7.176 -4.635 -18.296 1 14.07 ? C5 GMP 201 A 1 HETATM 14 C C6 GMP . . . C 2 7.695 -3.217 -18.217 1 14.06 ? C6 GMP 201 A 1 HETATM 15 O O6 GMP . . . C 2 8.058 -2.564 -19.159 1 14.06 ? O6 GMP 201 A 1 HETATM 16 N N1 GMP . . . C 2 7.858 -2.668 -16.945 1 14 ? N1 GMP 201 A 1 HETATM 17 C C2 GMP . . . C 2 7.459 -3.337 -15.781 1 14.02 ? C2 GMP 201 A 1 HETATM 18 N N2 GMP . . . C 2 7.589 -2.695 -14.526 1 14.01 ? N2 GMP 201 A 1 HETATM 19 N N3 GMP . . . C 2 6.983 -4.654 -15.846 1 14.01 ? N3 GMP 201 A 1 HETATM 20 C C4 GMP . . . C 2 6.851 -5.289 -17.123 1 14.16 ? C4 GMP 201 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #