data_6LS4 # _model_server_result.job_id JTLENOxkcIOTywVPrQxH-Q _model_server_result.datetime_utc '2024-10-20 19:13:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ls4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":504}' # _entry.id 6LS4 # _exptl.entry_id 6LS4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.512 _entity.id 9 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 3-[(4-cyclopropylphenyl)sulfonylamino]-4-methyl-N-(pyridin-3-ylmethyl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.42 _cell.angle_gamma 90 _cell.entry_id 6LS4 _cell.length_a 82.68 _cell.length_b 102.2 _cell.length_c 131.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LS4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 L N N ? 9 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 H MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc2 A O THR 41 A THR 41 1_555 H MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc3 A OG1 THR 41 A THR 41 1_555 H MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc4 A O GLY 44 A GLY 44 1_555 H MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc5 A OE1 GLU 55 A GLU 55 1_555 H MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc6 A OE2 GLU 55 A GLU 55 1_555 H MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc7 F O1G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc8 F O1B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc9 G MG MG . A MG 502 1_555 T O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc10 G MG MG . A MG 502 1_555 T O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc11 G MG MG . A MG 502 1_555 T O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc12 U O HOH . B HOH 601 1_555 P MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc13 U O HOH . B HOH 602 1_555 P MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc14 U O HOH . B HOH 605 1_555 P MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc15 C OD1 ASP 39 C ASP 39 1_555 O MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc16 C OD2 ASP 39 C ASP 39 1_555 O MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc17 C O THR 41 C THR 41 1_555 O MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc18 C OG1 THR 41 C THR 41 1_555 O MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc19 C O GLY 44 C GLY 44 1_555 O MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc20 C OE1 GLU 55 C GLU 55 1_555 O MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc21 C OE2 GLU 55 C GLU 55 1_555 O MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc22 C O ASN 249 C ASN 249 1_555 P MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc23 C OD1 ASN 249 C ASN 249 1_555 P MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc24 C OE2 GLU 254 C GLU 254 1_555 P MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc25 M O1G GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc26 M O1B GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc27 N MG MG . C MG 502 1_555 V O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc28 N MG MG . C MG 502 1_555 V O HOH . C HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc29 N MG MG . C MG 502 1_555 V O HOH . C HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc30 Q O3G GTP . D GTP 501 1_555 R MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc31 Q O1B GTP . D GTP 501 1_555 R MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc32 R MG MG . D MG 502 1_555 W O HOH . D HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc33 R MG MG . D MG 502 1_555 W O HOH . D HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C23 H23 N3 O3 S' _chem_comp.formula_weight 421.512 _chem_comp.id S40 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(4-cyclopropylphenyl)sulfonylamino]-4-methyl-N-(pyridin-3-ylmethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N16 C12 S40 sing 410 n n N16 S17 S40 sing 411 n n C35 C13 S40 sing 412 n n O27 S17 S40 doub 413 n n C12 C13 S40 doub 414 n y C12 C11 S40 sing 415 n y C13 C14 S40 sing 416 n y C11 C10 S40 doub 417 n y C14 C15 S40 doub 418 n y S17 O28 S40 doub 419 n n S17 C18 S40 sing 420 n n C10 C15 S40 sing 421 n y C10 C9 S40 sing 422 n n C9 O26 S40 doub 423 n n C9 N8 S40 sing 424 n n N8 C7 S40 sing 425 n n C19 C18 S40 doub 426 n y C19 C20 S40 sing 427 n y C7 C2 S40 sing 428 n n C18 C23 S40 sing 429 n y C20 C21 S40 doub 430 n y C23 C22 S40 doub 431 n y C2 C3 S40 doub 432 n y C2 C1 S40 sing 433 n y C21 C22 S40 sing 434 n y C21 C44 S40 sing 435 n n C3 C4 S40 sing 436 n y C1 N6 S40 doub 437 n y C46 C44 S40 sing 438 n n C46 C45 S40 sing 439 n n C44 C45 S40 sing 440 n n C4 C5 S40 doub 441 n y N6 C5 S40 sing 442 n y C1 H1 S40 sing 443 n n C11 H2 S40 sing 444 n n C14 H3 S40 sing 445 n n C15 H4 S40 sing 446 n n C19 H5 S40 sing 447 n n C20 H6 S40 sing 448 n n C22 H7 S40 sing 449 n n C23 H8 S40 sing 450 n n C3 H9 S40 sing 451 n n C35 H10 S40 sing 452 n n C35 H11 S40 sing 453 n n C35 H12 S40 sing 454 n n C4 H13 S40 sing 455 n n C44 H14 S40 sing 456 n n C45 H15 S40 sing 457 n n C45 H16 S40 sing 458 n n C46 H17 S40 sing 459 n n C46 H18 S40 sing 460 n n C5 H19 S40 sing 461 n n C7 H20 S40 sing 462 n n C7 H21 S40 sing 463 n n N16 H22 S40 sing 464 n n N8 H23 S40 sing 465 n n # _atom_sites.entry_id 6LS4 _atom_sites.fract_transf_matrix[1][1] 0.012095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003795 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 501 501 GTP GTP . G 5 MG A 1 502 505 MG MG . H 5 MG A 1 503 506 MG MG . I 6 GDP B 1 501 501 GDP GDP . J 7 MES B 1 502 601 MES MES . K 8 GOL B 1 503 701 GOL GOL . L 9 S40 B 1 504 1 S40 S40 . M 4 GTP C 1 501 501 GTP GTP . N 5 MG C 1 502 505 MG MG . O 5 MG C 1 503 506 MG MG . P 5 MG C 1 504 507 MG MG . Q 4 GTP D 1 501 501 GTP GTP . R 5 MG D 1 502 505 MG MG . S 9 S40 D 1 503 2 S40 S40 . T 10 HOH A 1 601 12 HOH HOH . T 10 HOH A 2 602 24 HOH HOH . T 10 HOH A 3 603 10 HOH HOH . T 10 HOH A 4 604 13 HOH HOH . U 10 HOH B 1 601 1 HOH HOH . U 10 HOH B 2 602 4 HOH HOH . U 10 HOH B 3 603 19 HOH HOH . U 10 HOH B 4 604 9 HOH HOH . U 10 HOH B 5 605 3 HOH HOH . U 10 HOH B 6 606 21 HOH HOH . U 10 HOH B 7 607 23 HOH HOH . V 10 HOH C 1 601 7 HOH HOH . V 10 HOH C 2 602 20 HOH HOH . V 10 HOH C 3 603 22 HOH HOH . V 10 HOH C 4 604 8 HOH HOH . V 10 HOH C 5 605 6 HOH HOH . W 10 HOH D 1 601 17 HOH HOH . W 10 HOH D 2 602 14 HOH HOH . W 10 HOH D 3 603 15 HOH HOH . W 10 HOH D 4 604 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S40 . . . L 9 -12.749 22.143 19.78 1 70.92 ? C1 S40 504 B 1 HETATM 2 C C10 S40 . . . L 9 -16.436 19.915 16.552 1 80.92 ? C10 S40 504 B 1 HETATM 3 C C11 S40 . . . L 9 -17.523 20.675 16.106 1 80.26 ? C11 S40 504 B 1 HETATM 4 C C12 S40 . . . L 9 -18.732 20.048 15.799 1 72.99 ? C12 S40 504 B 1 HETATM 5 C C13 S40 . . . L 9 -18.856 18.662 15.936 1 75.63 ? C13 S40 504 B 1 HETATM 6 C C14 S40 . . . L 9 -17.769 17.904 16.381 1 77.52 ? C14 S40 504 B 1 HETATM 7 C C15 S40 . . . L 9 -16.56 18.532 16.689 1 79.47 ? C15 S40 504 B 1 HETATM 8 C C18 S40 . . . L 9 -21.678 20.335 17.566 1 75.17 ? C18 S40 504 B 1 HETATM 9 C C19 S40 . . . L 9 -23.04 20.047 17.466 1 72.02 ? C19 S40 504 B 1 HETATM 10 C C2 S40 . . . L 9 -13.699 22.872 19.065 1 77.25 ? C2 S40 504 B 1 HETATM 11 C C20 S40 . . . L 9 -23.613 19.086 18.301 1 74.21 ? C20 S40 504 B 1 HETATM 12 C C21 S40 . . . L 9 -22.826 18.413 19.235 1 77.44 ? C21 S40 504 B 1 HETATM 13 C C22 S40 . . . L 9 -21.463 18.701 19.336 1 69.08 ? C22 S40 504 B 1 HETATM 14 C C23 S40 . . . L 9 -20.888 19.662 18.501 1 71.6 ? C23 S40 504 B 1 HETATM 15 C C3 S40 . . . L 9 -14.534 23.728 19.719 1 78.34 ? C3 S40 504 B 1 HETATM 16 C C35 S40 . . . L 9 -20.192 17.969 15.596 1 66.12 ? C35 S40 504 B 1 HETATM 17 C C4 S40 . . . L 9 -14.438 23.872 21.07 1 72.84 ? C4 S40 504 B 1 HETATM 18 C C44 S40 . . . L 9 -23.46 17.35 20.158 1 76.79 ? C44 S40 504 B 1 HETATM 19 C C45 S40 . . . L 9 -24.737 17.407 21.035 1 73.63 ? C45 S40 504 B 1 HETATM 20 C C46 S40 . . . L 9 -24.665 16.379 19.952 1 77.06 ? C46 S40 504 B 1 HETATM 21 C C5 S40 . . . L 9 -13.487 23.142 21.782 1 78.45 ? C5 S40 504 B 1 HETATM 22 C C7 S40 . . . L 9 -13.807 22.708 17.53 1 81.71 ? C7 S40 504 B 1 HETATM 23 C C9 S40 . . . L 9 -15.099 20.61 16.892 1 83.25 ? C9 S40 504 B 1 HETATM 24 N N16 S40 . . . L 9 -19.875 20.846 15.33 1 84.01 ? N16 S40 504 B 1 HETATM 25 N N6 S40 . . . L 9 -12.656 22.289 21.129 1 79.56 ? N6 S40 504 B 1 HETATM 26 N N8 S40 . . . L 9 -15.078 22.045 17.204 1 78.77 ? N8 S40 504 B 1 HETATM 27 O O26 S40 . . . L 9 -14.089 19.985 16.902 1 84.51 ? O26 S40 504 B 1 HETATM 28 O O27 S40 . . . L 9 -21.953 22.4 15.796 1 82.92 ? O27 S40 504 B 1 HETATM 29 O O28 S40 . . . L 9 -20.222 22.625 17.246 1 78.61 ? O28 S40 504 B 1 HETATM 30 S S17 S40 . . . L 9 -20.925 21.597 16.47 1 84.89 ? S17 S40 504 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #