data_6LS9 # _model_server_result.job_id 6RmApmhFHdI4vVbQyZzYJQ _model_server_result.datetime_utc '2024-11-30 05:06:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ls9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 6LS9 # _exptl.entry_id 6LS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.5 _cell.angle_gamma 90 _cell.entry_id 6LS9 _cell.length_a 116.272 _cell.length_b 104.392 _cell.length_c 98.772 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H 1 1 B,F,I 2 1 C,G,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D NAG 1 D 1 NAG A 1003 NAG 2 n D NAG 2 D 2 NAG A 1004 NAG 2 n D NAG 3 D 3 NAG A 1005 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 61 A CYS 57 1_555 A SG CYS 183 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 100 A CYS 96 1_555 A SG CYS 199 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 A SG CYS 112 A CYS 108 1_555 A SG CYS 121 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf4 B SG CYS 61 B CYS 57 1_555 B SG CYS 183 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 100 B CYS 96 1_555 B SG CYS 199 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 B SG CYS 112 B CYS 108 1_555 B SG CYS 121 B CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf7 C SG CYS 61 C CYS 57 1_555 C SG CYS 183 C CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf8 C SG CYS 100 C CYS 96 1_555 C SG CYS 199 C CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? disulf ? disulf9 C SG CYS 112 C CYS 108 1_555 C SG CYS 121 C CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 27 A ASN 23 1_555 E C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale2 A ND2 ASN 88 A ASN 84 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 B ND2 ASN 88 B ASN 84 1_555 F C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 C ND2 ASN 27 C ASN 23 1_555 G C1 NAG . C NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale6 D O4 NAG . D NAG 2 1_555 D C1 NAG . D NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6LS9 _atom_sites.fract_transf_matrix[1][1] 0.008601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003562 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 1001 1001 NAG NAG . F 3 NAG B 1 1001 1001 NAG NAG . G 3 NAG C 1 1001 1001 NAG NAG . H 4 HOH A 1 1101 36 HOH HOH . H 4 HOH A 2 1102 37 HOH HOH . H 4 HOH A 3 1103 31 HOH HOH . H 4 HOH A 4 1104 21 HOH HOH . H 4 HOH A 5 1105 34 HOH HOH . H 4 HOH A 6 1106 6 HOH HOH . H 4 HOH A 7 1107 33 HOH HOH . H 4 HOH A 8 1108 29 HOH HOH . H 4 HOH A 9 1109 26 HOH HOH . H 4 HOH A 10 1110 46 HOH HOH . H 4 HOH A 11 1111 22 HOH HOH . H 4 HOH A 12 1112 2 HOH HOH . H 4 HOH A 13 1113 5 HOH HOH . H 4 HOH A 14 1114 32 HOH HOH . H 4 HOH A 15 1115 49 HOH HOH . H 4 HOH A 16 1116 42 HOH HOH . H 4 HOH A 17 1117 48 HOH HOH . H 4 HOH A 18 1118 23 HOH HOH . H 4 HOH A 19 1119 57 HOH HOH . H 4 HOH A 20 1120 66 HOH HOH . H 4 HOH A 21 1121 14 HOH HOH . H 4 HOH A 22 1122 11 HOH HOH . H 4 HOH A 23 1123 12 HOH HOH . H 4 HOH A 24 1124 52 HOH HOH . H 4 HOH A 25 1125 65 HOH HOH . H 4 HOH A 26 1126 7 HOH HOH . H 4 HOH A 27 1127 13 HOH HOH . H 4 HOH A 28 1128 17 HOH HOH . H 4 HOH A 29 1129 62 HOH HOH . H 4 HOH A 30 1130 10 HOH HOH . H 4 HOH A 31 1131 27 HOH HOH . H 4 HOH A 32 1132 55 HOH HOH . I 4 HOH B 1 1101 56 HOH HOH . I 4 HOH B 2 1102 67 HOH HOH . I 4 HOH B 3 1103 63 HOH HOH . I 4 HOH B 4 1104 54 HOH HOH . I 4 HOH B 5 1105 39 HOH HOH . I 4 HOH B 6 1106 41 HOH HOH . I 4 HOH B 7 1107 8 HOH HOH . I 4 HOH B 8 1108 61 HOH HOH . I 4 HOH B 9 1109 44 HOH HOH . I 4 HOH B 10 1110 47 HOH HOH . I 4 HOH B 11 1111 3 HOH HOH . I 4 HOH B 12 1112 20 HOH HOH . I 4 HOH B 13 1113 30 HOH HOH . I 4 HOH B 14 1114 9 HOH HOH . I 4 HOH B 15 1115 59 HOH HOH . I 4 HOH B 16 1116 64 HOH HOH . I 4 HOH B 17 1117 28 HOH HOH . I 4 HOH B 18 1118 1 HOH HOH . I 4 HOH B 19 1119 24 HOH HOH . I 4 HOH B 20 1120 68 HOH HOH . I 4 HOH B 21 1121 18 HOH HOH . I 4 HOH B 22 1122 53 HOH HOH . I 4 HOH B 23 1123 16 HOH HOH . J 4 HOH C 1 1101 50 HOH HOH . J 4 HOH C 2 1102 60 HOH HOH . J 4 HOH C 3 1103 51 HOH HOH . J 4 HOH C 4 1104 38 HOH HOH . J 4 HOH C 5 1105 25 HOH HOH . J 4 HOH C 6 1106 19 HOH HOH . J 4 HOH C 7 1107 40 HOH HOH . J 4 HOH C 8 1108 45 HOH HOH . J 4 HOH C 9 1109 4 HOH HOH . J 4 HOH C 10 1110 35 HOH HOH . J 4 HOH C 11 1111 58 HOH HOH . J 4 HOH C 12 1112 43 HOH HOH . J 4 HOH C 13 1113 15 HOH HOH . J 4 HOH C 14 1114 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 42.612 16.048 38.367 1 72.93 ? C1 NAG 1001 A 1 HETATM 2 C C2 NAG . . . E 3 44.126 16.3 38.585 1 73.1 ? C2 NAG 1001 A 1 HETATM 3 C C3 NAG . . . E 3 44.906 15.697 37.407 1 73.7 ? C3 NAG 1001 A 1 HETATM 4 C C4 NAG . . . E 3 44.488 14.252 37.136 1 78.24 ? C4 NAG 1001 A 1 HETATM 5 C C5 NAG . . . E 3 42.965 14.138 37.054 1 70.76 ? C5 NAG 1001 A 1 HETATM 6 C C6 NAG . . . E 3 42.451 12.723 36.964 1 60.03 ? C6 NAG 1001 A 1 HETATM 7 C C7 NAG . . . E 3 44.333 18.391 39.872 1 61.38 ? C7 NAG 1001 A 1 HETATM 8 C C8 NAG . . . E 3 44.771 19.826 39.837 1 52.11 ? C8 NAG 1001 A 1 HETATM 9 N N2 NAG . . . E 3 44.465 17.708 38.732 1 68.52 ? N2 NAG 1001 A 1 HETATM 10 O O3 NAG . . . E 3 46.31 15.795 37.614 1 75.63 ? O3 NAG 1001 A 1 HETATM 11 O O4 NAG . . . E 3 45.05 13.818 35.901 1 80.43 ? O4 NAG 1001 A 1 HETATM 12 O O5 NAG . . . E 3 42.388 14.679 38.24 1 74.35 ? O5 NAG 1001 A 1 HETATM 13 O O6 NAG . . . E 3 41.49 12.481 37.983 1 61.22 ? O6 NAG 1001 A 1 HETATM 14 O O7 NAG . . . E 3 43.856 17.884 40.876 1 56.92 ? O7 NAG 1001 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #