data_6LSD
#
_model_server_result.job_id            JJmD0CrmlZls0QK1xnkG_g 
_model_server_result.datetime_utc      '2024-10-20 00:25:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lsd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":403}' 
#
_entry.id    6LSD 
#
_exptl.entry_id    6LSD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6LSD 
_cell.length_a            89.674 
_cell.length_b            89.674 
_cell.length_c            86.943 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LSD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        89 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,O 1 1 
C,M,Q 1 2 
B,H,I,J,K,L,P 2 1 
D,N,R 2 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 89.674 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C ACE 1 C ACE 23 1_555 C N ALA 2 C ALA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 C C ARG 4 C ARG 26 1_555 C N LBZ 5 C LBZ 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 C C LBZ 5 C LBZ 27 1_555 C N SER 6 C SER 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 D C ACE 1 D ACE 23 1_555 D N ALA 2 D ALA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale5 D C ARG 4 D ARG 26 1_555 D N LBZ 5 D LBZ 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 D C LBZ 5 D LBZ 27 1_555 D N SER 6 D SER 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 122 n n 
C1 C2 GOL sing 123 n n 
C1 H11 GOL sing 124 n n 
C1 H12 GOL sing 125 n n 
O1 HO1 GOL sing 126 n n 
C2 O2 GOL sing 127 n n 
C2 C3 GOL sing 128 n n 
C2 H2 GOL sing 129 n n 
O2 HO2 GOL sing 130 n n 
C3 O3 GOL sing 131 n n 
C3 H31 GOL sing 132 n n 
C3 H32 GOL sing 133 n n 
O3 HO3 GOL sing 134 n n 
#
_atom_sites.entry_id                     6LSD 
_atom_sites.fract_transf_matrix[1][1]    0.011152 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011502 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 401 1 SO4 SO4 . 
F 3 SO4 A 1 402 5 SO4 SO4 . 
G 4 GOL A 1 403 1 GOL GOL . 
H 3 SO4 B 1 401 2 SO4 SO4 . 
I 3 SO4 B 1 402 3 SO4 SO4 . 
J 3 SO4 B 1 403 4 SO4 SO4 . 
K 3 SO4 B 1 404 8 SO4 SO4 . 
L 3 SO4 B 1 405 9 SO4 SO4 . 
M 3 SO4 C 1 101 6 SO4 SO4 . 
N 3 SO4 D 1 101 7 SO4 SO4 . 
O 5 HOH A 1 501 113 HOH HOH . 
O 5 HOH A 2 502 11 HOH HOH . 
O 5 HOH A 3 503 93 HOH HOH . 
O 5 HOH A 4 504 164 HOH HOH . 
O 5 HOH A 5 505 81 HOH HOH . 
O 5 HOH A 6 506 73 HOH HOH . 
O 5 HOH A 7 507 158 HOH HOH . 
O 5 HOH A 8 508 108 HOH HOH . 
O 5 HOH A 9 509 16 HOH HOH . 
O 5 HOH A 10 510 92 HOH HOH . 
O 5 HOH A 11 511 98 HOH HOH . 
O 5 HOH A 12 512 35 HOH HOH . 
O 5 HOH A 13 513 27 HOH HOH . 
O 5 HOH A 14 514 67 HOH HOH . 
O 5 HOH A 15 515 37 HOH HOH . 
O 5 HOH A 16 516 34 HOH HOH . 
O 5 HOH A 17 517 4 HOH HOH . 
O 5 HOH A 18 518 147 HOH HOH . 
O 5 HOH A 19 519 3 HOH HOH . 
O 5 HOH A 20 520 6 HOH HOH . 
O 5 HOH A 21 521 22 HOH HOH . 
O 5 HOH A 22 522 63 HOH HOH . 
O 5 HOH A 23 523 171 HOH HOH . 
O 5 HOH A 24 524 12 HOH HOH . 
O 5 HOH A 25 525 7 HOH HOH . 
O 5 HOH A 26 526 52 HOH HOH . 
O 5 HOH A 27 527 99 HOH HOH . 
O 5 HOH A 28 528 70 HOH HOH . 
O 5 HOH A 29 529 53 HOH HOH . 
O 5 HOH A 30 530 33 HOH HOH . 
O 5 HOH A 31 531 130 HOH HOH . 
O 5 HOH A 32 532 127 HOH HOH . 
O 5 HOH A 33 533 1 HOH HOH . 
O 5 HOH A 34 534 154 HOH HOH . 
O 5 HOH A 35 535 60 HOH HOH . 
O 5 HOH A 36 536 115 HOH HOH . 
O 5 HOH A 37 537 38 HOH HOH . 
O 5 HOH A 38 538 25 HOH HOH . 
O 5 HOH A 39 539 18 HOH HOH . 
O 5 HOH A 40 540 62 HOH HOH . 
O 5 HOH A 41 541 145 HOH HOH . 
O 5 HOH A 42 542 56 HOH HOH . 
O 5 HOH A 43 543 107 HOH HOH . 
O 5 HOH A 44 544 97 HOH HOH . 
O 5 HOH A 45 545 65 HOH HOH . 
O 5 HOH A 46 546 88 HOH HOH . 
O 5 HOH A 47 547 112 HOH HOH . 
O 5 HOH A 48 548 133 HOH HOH . 
O 5 HOH A 49 549 153 HOH HOH . 
O 5 HOH A 50 550 106 HOH HOH . 
O 5 HOH A 51 551 31 HOH HOH . 
O 5 HOH A 52 552 58 HOH HOH . 
O 5 HOH A 53 553 116 HOH HOH . 
O 5 HOH A 54 554 83 HOH HOH . 
O 5 HOH A 55 555 156 HOH HOH . 
O 5 HOH A 56 556 32 HOH HOH . 
O 5 HOH A 57 557 40 HOH HOH . 
O 5 HOH A 58 558 146 HOH HOH . 
O 5 HOH A 59 559 162 HOH HOH . 
O 5 HOH A 60 560 85 HOH HOH . 
O 5 HOH A 61 561 91 HOH HOH . 
O 5 HOH A 62 562 143 HOH HOH . 
O 5 HOH A 63 563 132 HOH HOH . 
O 5 HOH A 64 564 157 HOH HOH . 
O 5 HOH A 65 565 151 HOH HOH . 
O 5 HOH A 66 566 140 HOH HOH . 
O 5 HOH A 67 567 104 HOH HOH . 
O 5 HOH A 68 568 125 HOH HOH . 
O 5 HOH A 69 569 45 HOH HOH . 
P 5 HOH B 1 501 39 HOH HOH . 
P 5 HOH B 2 502 114 HOH HOH . 
P 5 HOH B 3 503 24 HOH HOH . 
P 5 HOH B 4 504 44 HOH HOH . 
P 5 HOH B 5 505 122 HOH HOH . 
P 5 HOH B 6 506 54 HOH HOH . 
P 5 HOH B 7 507 135 HOH HOH . 
P 5 HOH B 8 508 5 HOH HOH . 
P 5 HOH B 9 509 17 HOH HOH . 
P 5 HOH B 10 510 19 HOH HOH . 
P 5 HOH B 11 511 141 HOH HOH . 
P 5 HOH B 12 512 64 HOH HOH . 
P 5 HOH B 13 513 161 HOH HOH . 
P 5 HOH B 14 514 26 HOH HOH . 
P 5 HOH B 15 515 9 HOH HOH . 
P 5 HOH B 16 516 20 HOH HOH . 
P 5 HOH B 17 517 59 HOH HOH . 
P 5 HOH B 18 518 8 HOH HOH . 
P 5 HOH B 19 519 13 HOH HOH . 
P 5 HOH B 20 520 21 HOH HOH . 
P 5 HOH B 21 521 109 HOH HOH . 
P 5 HOH B 22 522 95 HOH HOH . 
P 5 HOH B 23 523 71 HOH HOH . 
P 5 HOH B 24 524 74 HOH HOH . 
P 5 HOH B 25 525 148 HOH HOH . 
P 5 HOH B 26 526 124 HOH HOH . 
P 5 HOH B 27 527 90 HOH HOH . 
P 5 HOH B 28 528 126 HOH HOH . 
P 5 HOH B 29 529 48 HOH HOH . 
P 5 HOH B 30 530 69 HOH HOH . 
P 5 HOH B 31 531 94 HOH HOH . 
P 5 HOH B 32 532 2 HOH HOH . 
P 5 HOH B 33 533 46 HOH HOH . 
P 5 HOH B 34 534 136 HOH HOH . 
P 5 HOH B 35 535 137 HOH HOH . 
P 5 HOH B 36 536 15 HOH HOH . 
P 5 HOH B 37 537 168 HOH HOH . 
P 5 HOH B 38 538 84 HOH HOH . 
P 5 HOH B 39 539 55 HOH HOH . 
P 5 HOH B 40 540 119 HOH HOH . 
P 5 HOH B 41 541 57 HOH HOH . 
P 5 HOH B 42 542 29 HOH HOH . 
P 5 HOH B 43 543 110 HOH HOH . 
P 5 HOH B 44 544 87 HOH HOH . 
P 5 HOH B 45 545 155 HOH HOH . 
P 5 HOH B 46 546 105 HOH HOH . 
P 5 HOH B 47 547 129 HOH HOH . 
P 5 HOH B 48 548 169 HOH HOH . 
P 5 HOH B 49 549 14 HOH HOH . 
P 5 HOH B 50 550 103 HOH HOH . 
P 5 HOH B 51 551 123 HOH HOH . 
P 5 HOH B 52 552 23 HOH HOH . 
P 5 HOH B 53 553 82 HOH HOH . 
P 5 HOH B 54 554 152 HOH HOH . 
P 5 HOH B 55 555 121 HOH HOH . 
P 5 HOH B 56 556 68 HOH HOH . 
P 5 HOH B 57 557 134 HOH HOH . 
P 5 HOH B 58 558 75 HOH HOH . 
P 5 HOH B 59 559 170 HOH HOH . 
P 5 HOH B 60 560 72 HOH HOH . 
P 5 HOH B 61 561 10 HOH HOH . 
P 5 HOH B 62 562 142 HOH HOH . 
P 5 HOH B 63 563 89 HOH HOH . 
P 5 HOH B 64 564 79 HOH HOH . 
P 5 HOH B 65 565 100 HOH HOH . 
P 5 HOH B 66 566 80 HOH HOH . 
P 5 HOH B 67 567 111 HOH HOH . 
P 5 HOH B 68 568 120 HOH HOH . 
P 5 HOH B 69 569 163 HOH HOH . 
P 5 HOH B 70 570 77 HOH HOH . 
P 5 HOH B 71 571 166 HOH HOH . 
P 5 HOH B 72 572 118 HOH HOH . 
P 5 HOH B 73 573 149 HOH HOH . 
P 5 HOH B 74 574 150 HOH HOH . 
P 5 HOH B 75 575 102 HOH HOH . 
P 5 HOH B 76 576 139 HOH HOH . 
P 5 HOH B 77 577 76 HOH HOH . 
P 5 HOH B 78 578 144 HOH HOH . 
P 5 HOH B 79 579 101 HOH HOH . 
P 5 HOH B 80 580 131 HOH HOH . 
Q 5 HOH C 1 201 30 HOH HOH . 
Q 5 HOH C 2 202 61 HOH HOH . 
Q 5 HOH C 3 203 41 HOH HOH . 
Q 5 HOH C 4 204 42 HOH HOH . 
Q 5 HOH C 5 205 78 HOH HOH . 
Q 5 HOH C 6 206 50 HOH HOH . 
Q 5 HOH C 7 207 117 HOH HOH . 
Q 5 HOH C 8 208 128 HOH HOH . 
Q 5 HOH C 9 209 96 HOH HOH . 
Q 5 HOH C 10 210 36 HOH HOH . 
R 5 HOH D 1 201 43 HOH HOH . 
R 5 HOH D 2 202 86 HOH HOH . 
R 5 HOH D 3 203 138 HOH HOH . 
R 5 HOH D 4 204 28 HOH HOH . 
R 5 HOH D 5 205 49 HOH HOH . 
R 5 HOH D 6 206 160 HOH HOH . 
R 5 HOH D 7 207 47 HOH HOH . 
R 5 HOH D 8 208 51 HOH HOH . 
R 5 HOH D 9 209 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 4.871 31.531 25.159 1 60.26 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . G 4 4.317 30.856 26.28 1 57.34 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . G 4 5.5 30.513 24.176 1 59.03 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . G 4 5.126 30.836 22.871 1 62.07 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . G 4 7.052 30.678 24.389 1 54.43 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . G 4 7.655 29.433 24.464 1 46.58 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#