data_6LSM
#
_model_server_result.job_id            hbiJ3t1hvzqfb1IiObvsZA 
_model_server_result.datetime_utc      '2024-10-19 01:36:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lsm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":505}' 
#
_entry.id    6LSM 
#
_exptl.entry_id    6LSM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6LSM 
_cell.length_a            105.553 
_cell.length_b            158.081 
_cell.length_c            182.23 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LSM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 K N N 
? 7 N N N 
? 7 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc4 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc5 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc6 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
metalc ? metalc7 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc8 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc9 H MG MG . A MG 502 1_555 Z O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc10 H MG MG . A MG 502 1_555 Z O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
metalc ? metalc11 K CA CA . A CA 505 1_555 DA O HOH . E HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc12 B OE1 GLN 11 B GLN 11 1_555 M MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc13 B OE1 GLU 111 B GLU 113 1_555 N CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? 
metalc ? metalc14 B OE2 GLU 111 B GLU 113 1_555 N CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? 
metalc ? metalc15 L O1A GDP . B GDP 501 1_555 M MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc16 M MG MG . B MG 502 1_555 AA O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc17 M MG MG . B MG 502 1_555 AA O HOH . B HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? 
metalc ? metalc18 M MG MG . B MG 502 1_555 AA O HOH . B HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc19 M MG MG . B MG 502 1_555 AA O HOH . B HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc20 Q MG MG . B MG 506 1_555 AA O HOH . B HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc21 Q MG MG . B MG 506 1_555 BA O HOH . C HOH 635 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc22 C OD1 ASP 39 C ASP 39 1_555 U CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc23 C OD2 ASP 39 C ASP 39 1_555 U CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc24 C O THR 41 C THR 41 1_555 U CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc25 C OG1 THR 41 C THR 41 1_555 U CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc26 C O GLY 44 C GLY 44 1_555 U CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc27 C OE1 GLU 55 C GLU 55 1_555 U CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? 
metalc ? metalc28 C OE2 GLU 55 C GLU 55 1_555 U CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc29 S O1G GTP . C GTP 501 1_555 T MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? 
metalc ? metalc30 S O1B GTP . C GTP 501 1_555 T MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc31 T MG MG . C MG 502 1_555 BA O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? 
metalc ? metalc32 T MG MG . C MG 502 1_555 BA O HOH . C HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc33 T MG MG . C MG 502 1_555 BA O HOH . C HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc34 D OE1 GLN 11 D GLN 11 1_555 W MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc35 X MG MG . F MG 401 1_555 Y O2B ACP . F ACP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6LSM 
_atom_sites.fract_transf_matrix[1][1]    0.009474 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006326 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005488 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 503 CA CA . 
J 8 CL A 1 504 504 CL CL . 
K 7 CA A 1 505 505 CA CA . 
L 9 GDP B 1 501 501 GDP GDP . 
M 6 MG B 1 502 502 MG MG . 
N 7 CA B 1 503 503 CA CA . 
O 10 MES B 1 504 504 MES MES . 
P 10 MES B 1 505 505 MES MES . 
Q 6 MG B 1 506 506 MG MG . 
R 11 ERX B 1 507 601 ERX G11 . 
S 5 GTP C 1 501 501 GTP GTP . 
T 6 MG C 1 502 502 MG MG . 
U 7 CA C 1 503 503 CA CA . 
V 9 GDP D 1 600 600 GDP GDP . 
W 6 MG D 1 601 601 MG MG . 
X 6 MG F 1 401 702 MG MG . 
Y 12 ACP F 1 402 801 ACP ACP . 
Z 13 HOH A 1 601 43 HOH HOH . 
Z 13 HOH A 2 602 104 HOH HOH . 
Z 13 HOH A 3 603 53 HOH HOH . 
Z 13 HOH A 4 604 103 HOH HOH . 
Z 13 HOH A 5 605 89 HOH HOH . 
Z 13 HOH A 6 606 66 HOH HOH . 
Z 13 HOH A 7 607 107 HOH HOH . 
Z 13 HOH A 8 608 17 HOH HOH . 
Z 13 HOH A 9 609 82 HOH HOH . 
Z 13 HOH A 10 610 63 HOH HOH . 
Z 13 HOH A 11 611 68 HOH HOH . 
Z 13 HOH A 12 612 87 HOH HOH . 
Z 13 HOH A 13 613 52 HOH HOH . 
Z 13 HOH A 14 614 62 HOH HOH . 
AA 13 HOH B 1 601 96 HOH HOH . 
AA 13 HOH B 2 602 64 HOH HOH . 
AA 13 HOH B 3 603 7 HOH HOH . 
AA 13 HOH B 4 604 57 HOH HOH . 
AA 13 HOH B 5 605 80 HOH HOH . 
AA 13 HOH B 6 606 85 HOH HOH . 
AA 13 HOH B 7 607 97 HOH HOH . 
AA 13 HOH B 8 608 40 HOH HOH . 
AA 13 HOH B 9 609 21 HOH HOH . 
AA 13 HOH B 10 610 1 HOH HOH . 
AA 13 HOH B 11 611 109 HOH HOH . 
AA 13 HOH B 12 612 92 HOH HOH . 
AA 13 HOH B 13 613 22 HOH HOH . 
AA 13 HOH B 14 614 18 HOH HOH . 
AA 13 HOH B 15 615 95 HOH HOH . 
AA 13 HOH B 16 616 34 HOH HOH . 
AA 13 HOH B 17 617 30 HOH HOH . 
AA 13 HOH B 18 618 76 HOH HOH . 
AA 13 HOH B 19 619 50 HOH HOH . 
AA 13 HOH B 20 620 4 HOH HOH . 
AA 13 HOH B 21 621 14 HOH HOH . 
AA 13 HOH B 22 622 94 HOH HOH . 
AA 13 HOH B 23 623 65 HOH HOH . 
AA 13 HOH B 24 624 45 HOH HOH . 
AA 13 HOH B 25 625 69 HOH HOH . 
AA 13 HOH B 26 626 98 HOH HOH . 
AA 13 HOH B 27 627 61 HOH HOH . 
BA 13 HOH C 1 601 2 HOH HOH . 
BA 13 HOH C 2 602 32 HOH HOH . 
BA 13 HOH C 3 603 25 HOH HOH . 
BA 13 HOH C 4 604 70 HOH HOH . 
BA 13 HOH C 5 605 16 HOH HOH . 
BA 13 HOH C 6 606 74 HOH HOH . 
BA 13 HOH C 7 607 28 HOH HOH . 
BA 13 HOH C 8 608 101 HOH HOH . 
BA 13 HOH C 9 609 71 HOH HOH . 
BA 13 HOH C 10 610 102 HOH HOH . 
BA 13 HOH C 11 611 77 HOH HOH . 
BA 13 HOH C 12 612 10 HOH HOH . 
BA 13 HOH C 13 613 35 HOH HOH . 
BA 13 HOH C 14 614 75 HOH HOH . 
BA 13 HOH C 15 615 100 HOH HOH . 
BA 13 HOH C 16 616 24 HOH HOH . 
BA 13 HOH C 17 617 81 HOH HOH . 
BA 13 HOH C 18 618 41 HOH HOH . 
BA 13 HOH C 19 619 3 HOH HOH . 
BA 13 HOH C 20 620 29 HOH HOH . 
BA 13 HOH C 21 621 36 HOH HOH . 
BA 13 HOH C 22 622 91 HOH HOH . 
BA 13 HOH C 23 623 90 HOH HOH . 
BA 13 HOH C 24 624 72 HOH HOH . 
BA 13 HOH C 25 625 86 HOH HOH . 
BA 13 HOH C 26 626 49 HOH HOH . 
BA 13 HOH C 27 627 26 HOH HOH . 
BA 13 HOH C 28 628 99 HOH HOH . 
BA 13 HOH C 29 629 105 HOH HOH . 
BA 13 HOH C 30 630 67 HOH HOH . 
BA 13 HOH C 31 631 27 HOH HOH . 
BA 13 HOH C 32 632 19 HOH HOH . 
BA 13 HOH C 33 633 39 HOH HOH . 
BA 13 HOH C 34 634 6 HOH HOH . 
BA 13 HOH C 35 635 108 HOH HOH . 
CA 13 HOH D 1 701 47 HOH HOH . 
CA 13 HOH D 2 702 79 HOH HOH . 
CA 13 HOH D 3 703 78 HOH HOH . 
DA 13 HOH E 1 201 46 HOH HOH . 
DA 13 HOH E 2 202 31 HOH HOH . 
DA 13 HOH E 3 203 44 HOH HOH . 
DA 13 HOH E 4 204 88 HOH HOH . 
DA 13 HOH E 5 205 42 HOH HOH . 
DA 13 HOH E 6 206 58 HOH HOH . 
DA 13 HOH E 7 207 37 HOH HOH . 
DA 13 HOH E 8 208 55 HOH HOH . 
EA 13 HOH F 1 501 13 HOH HOH . 
EA 13 HOH F 2 502 8 HOH HOH . 
EA 13 HOH F 3 503 93 HOH HOH . 
EA 13 HOH F 4 504 84 HOH HOH . 
EA 13 HOH F 5 505 33 HOH HOH . 
EA 13 HOH F 6 506 83 HOH HOH . 
EA 13 HOH F 7 507 54 HOH HOH . 
EA 13 HOH F 8 508 60 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               42.495 
_atom_site.Cartn_y               80.83 
_atom_site.Cartn_z               65.853 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        113.78 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           505 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#