data_6LSV # _model_server_result.job_id 2iU9l8ASvyJcWmafhLje0A _model_server_result.datetime_utc '2024-10-22 01:34:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lsv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 6LSV # _exptl.entry_id 6LSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.04 _cell.angle_gamma 90 _cell.entry_id 6LSV _cell.length_a 153.476 _cell.length_b 74.416 _cell.length_c 75.488 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 227 A HIS 244 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc2 A OD1 ASP 229 A ASP 246 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc3 A NE2 HIS 284 A HIS 301 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc4 C O1 AKG . A AKG 401 1_555 E FE FE . A FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc5 B NE2 HIS 227 B HIS 244 1_555 H FE FE . B FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc6 B OD1 ASP 229 B ASP 246 1_555 H FE FE . B FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc7 B NE2 HIS 284 B HIS 301 1_555 H FE FE . B FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc8 F O2 AKG . B AKG 401 1_555 H FE FE . B FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LSV _atom_sites.fract_transf_matrix[1][1] 0.006516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002377 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AKG A 1 401 1 AKG AKG . D 3 JAA A 1 402 1 JAA JAA . E 4 FE A 1 403 1 FE FE . F 2 AKG B 1 401 2 AKG AKG . G 3 JAA B 1 402 2 JAA JAA . H 4 FE B 1 403 2 FE FE . I 5 HOH A 1 501 8 HOH HOH . I 5 HOH A 2 502 45 HOH HOH . I 5 HOH A 3 503 90 HOH HOH . I 5 HOH A 4 504 12 HOH HOH . I 5 HOH A 5 505 91 HOH HOH . I 5 HOH A 6 506 117 HOH HOH . I 5 HOH A 7 507 33 HOH HOH . I 5 HOH A 8 508 102 HOH HOH . I 5 HOH A 9 509 5 HOH HOH . I 5 HOH A 10 510 28 HOH HOH . I 5 HOH A 11 511 99 HOH HOH . I 5 HOH A 12 512 52 HOH HOH . I 5 HOH A 13 513 83 HOH HOH . I 5 HOH A 14 514 14 HOH HOH . I 5 HOH A 15 515 17 HOH HOH . I 5 HOH A 16 516 20 HOH HOH . I 5 HOH A 17 517 1 HOH HOH . I 5 HOH A 18 518 55 HOH HOH . I 5 HOH A 19 519 106 HOH HOH . I 5 HOH A 20 520 21 HOH HOH . I 5 HOH A 21 521 82 HOH HOH . I 5 HOH A 22 522 115 HOH HOH . I 5 HOH A 23 523 56 HOH HOH . I 5 HOH A 24 524 48 HOH HOH . I 5 HOH A 25 525 71 HOH HOH . I 5 HOH A 26 526 38 HOH HOH . I 5 HOH A 27 527 77 HOH HOH . I 5 HOH A 28 528 95 HOH HOH . I 5 HOH A 29 529 31 HOH HOH . I 5 HOH A 30 530 15 HOH HOH . I 5 HOH A 31 531 69 HOH HOH . I 5 HOH A 32 532 97 HOH HOH . I 5 HOH A 33 533 49 HOH HOH . I 5 HOH A 34 534 18 HOH HOH . I 5 HOH A 35 535 9 HOH HOH . I 5 HOH A 36 536 47 HOH HOH . I 5 HOH A 37 537 26 HOH HOH . I 5 HOH A 38 538 70 HOH HOH . I 5 HOH A 39 539 108 HOH HOH . I 5 HOH A 40 540 121 HOH HOH . I 5 HOH A 41 541 51 HOH HOH . I 5 HOH A 42 542 118 HOH HOH . I 5 HOH A 43 543 57 HOH HOH . I 5 HOH A 44 544 113 HOH HOH . I 5 HOH A 45 545 43 HOH HOH . I 5 HOH A 46 546 29 HOH HOH . I 5 HOH A 47 547 46 HOH HOH . I 5 HOH A 48 548 36 HOH HOH . I 5 HOH A 49 549 101 HOH HOH . I 5 HOH A 50 550 63 HOH HOH . I 5 HOH A 51 551 100 HOH HOH . I 5 HOH A 52 552 65 HOH HOH . I 5 HOH A 53 553 110 HOH HOH . I 5 HOH A 54 554 81 HOH HOH . I 5 HOH A 55 555 114 HOH HOH . I 5 HOH A 56 556 19 HOH HOH . I 5 HOH A 57 557 40 HOH HOH . I 5 HOH A 58 558 7 HOH HOH . I 5 HOH A 59 559 16 HOH HOH . I 5 HOH A 60 560 109 HOH HOH . I 5 HOH A 61 561 93 HOH HOH . I 5 HOH A 62 562 124 HOH HOH . I 5 HOH A 63 563 111 HOH HOH . I 5 HOH A 64 564 37 HOH HOH . I 5 HOH A 65 565 105 HOH HOH . I 5 HOH A 66 566 123 HOH HOH . I 5 HOH A 67 567 128 HOH HOH . J 5 HOH B 1 501 74 HOH HOH . J 5 HOH B 2 502 11 HOH HOH . J 5 HOH B 3 503 66 HOH HOH . J 5 HOH B 4 504 13 HOH HOH . J 5 HOH B 5 505 98 HOH HOH . J 5 HOH B 6 506 30 HOH HOH . J 5 HOH B 7 507 41 HOH HOH . J 5 HOH B 8 508 86 HOH HOH . J 5 HOH B 9 509 3 HOH HOH . J 5 HOH B 10 510 87 HOH HOH . J 5 HOH B 11 511 25 HOH HOH . J 5 HOH B 12 512 2 HOH HOH . J 5 HOH B 13 513 94 HOH HOH . J 5 HOH B 14 514 120 HOH HOH . J 5 HOH B 15 515 54 HOH HOH . J 5 HOH B 16 516 59 HOH HOH . J 5 HOH B 17 517 68 HOH HOH . J 5 HOH B 18 518 44 HOH HOH . J 5 HOH B 19 519 10 HOH HOH . J 5 HOH B 20 520 34 HOH HOH . J 5 HOH B 21 521 58 HOH HOH . J 5 HOH B 22 522 73 HOH HOH . J 5 HOH B 23 523 92 HOH HOH . J 5 HOH B 24 524 27 HOH HOH . J 5 HOH B 25 525 42 HOH HOH . J 5 HOH B 26 526 85 HOH HOH . J 5 HOH B 27 527 89 HOH HOH . J 5 HOH B 28 528 72 HOH HOH . J 5 HOH B 29 529 4 HOH HOH . J 5 HOH B 30 530 103 HOH HOH . J 5 HOH B 31 531 79 HOH HOH . J 5 HOH B 32 532 24 HOH HOH . J 5 HOH B 33 533 35 HOH HOH . J 5 HOH B 34 534 76 HOH HOH . J 5 HOH B 35 535 116 HOH HOH . J 5 HOH B 36 536 32 HOH HOH . J 5 HOH B 37 537 50 HOH HOH . J 5 HOH B 38 538 125 HOH HOH . J 5 HOH B 39 539 67 HOH HOH . J 5 HOH B 40 540 78 HOH HOH . J 5 HOH B 41 541 75 HOH HOH . J 5 HOH B 42 542 107 HOH HOH . J 5 HOH B 43 543 39 HOH HOH . J 5 HOH B 44 544 60 HOH HOH . J 5 HOH B 45 545 23 HOH HOH . J 5 HOH B 46 546 129 HOH HOH . J 5 HOH B 47 547 22 HOH HOH . J 5 HOH B 48 548 6 HOH HOH . J 5 HOH B 49 549 53 HOH HOH . J 5 HOH B 50 550 64 HOH HOH . J 5 HOH B 51 551 88 HOH HOH . J 5 HOH B 52 552 96 HOH HOH . J 5 HOH B 53 553 119 HOH HOH . J 5 HOH B 54 554 62 HOH HOH . J 5 HOH B 55 555 61 HOH HOH . J 5 HOH B 56 556 80 HOH HOH . J 5 HOH B 57 557 104 HOH HOH . J 5 HOH B 58 558 122 HOH HOH . J 5 HOH B 59 559 127 HOH HOH . J 5 HOH B 60 560 112 HOH HOH . J 5 HOH B 61 561 130 HOH HOH . J 5 HOH B 62 562 126 HOH HOH . J 5 HOH B 63 563 84 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 18.161 _atom_site.Cartn_y -29.952 _atom_site.Cartn_z 24.108 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 403 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 1 #