data_6LUF # _model_server_result.job_id wj3VT-VCUdzsKWtmNSrUMQ _model_server_result.datetime_utc '2025-08-31 14:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6luf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 6LUF # _exptl.entry_id 6LUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LUF _cell.length_a 80.927 _cell.length_b 154.127 _cell.length_c 194.063 _cell.Z_PDB 28 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,H 1 1 B,I 2 1 C,J 3 1 D,K 4 1 E,L 5 1 F,M 6 1 G,N 7 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6LUF _atom_sites.fract_transf_matrix[1][1] 0.012357 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 ADP A 1 401 604 ADP ADP . I 2 ADP B 1 401 604 ADP ADP . J 2 ADP C 1 401 604 ADP ADP . K 2 ADP D 1 401 604 ADP ADP . L 2 ADP E 1 401 604 ADP ADP . M 2 ADP F 1 401 604 ADP ADP . N 2 ADP G 1 401 604 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 2 16.277 50.545 -37.448 1 137.63 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . H 2 14.966 51.269 -37.276 1 134.78 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . H 2 17.485 51.401 -37.155 1 138.59 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . H 2 16.324 49.173 -36.822 1 139.19 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . H 2 17.739 50.326 -39.856 1 119.2 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . H 2 18.157 51.769 -39.94 1 117.4 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . H 2 18.68 49.299 -39.276 1 122.97 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . H 2 16.357 50.243 -39.031 1 136.61 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . H 2 17.274 49.847 -41.321 1 98.91 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . H 2 17.124 48.462 -41.624 1 99.08 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . H 2 17.246 48.239 -43.129 1 100.77 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . H 2 16.209 48.904 -43.852 1 102.75 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . H 2 18.566 48.771 -43.661 1 101.17 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . H 2 19.24 47.719 -44.35 1 100.21 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . H 2 18.214 49.863 -44.648 1 102.91 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . H 2 19.06 49.798 -45.802 1 100.48 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . H 2 16.762 49.574 -44.994 1 105.61 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . H 2 15.973 50.803 -45.268 1 108.96 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . H 2 14.976 51.247 -44.482 1 110.39 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . H 2 14.418 52.376 -44.982 1 109.43 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . H 2 15.06 52.666 -46.125 1 110.19 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . H 2 14.96 53.73 -47.147 1 112.94 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . H 2 14.038 54.718 -47.028 1 114.13 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . H 2 15.81 53.684 -48.197 1 112.34 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . H 2 16.725 52.703 -48.316 1 109.21 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . H 2 16.873 51.702 -47.422 1 107.22 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . H 2 16.082 51.626 -46.322 1 108.34 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 49 _model_server_stats.element_count 27 #