data_6LUF
#
_model_server_result.job_id            FdabxHfgziYUIyPp7RXVHg 
_model_server_result.datetime_utc      '2025-08-31 14:20:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6luf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":401}' 
#
_entry.id    6LUF 
#
_exptl.entry_id    6LUF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6LUF 
_cell.length_a            80.927 
_cell.length_b            154.127 
_cell.length_c            194.063 
_cell.Z_PDB               28 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LUF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,H 1 1 
B,I 2 1 
C,J 3 1 
D,K 4 1 
E,L 5 1 
F,M 6 1 
G,N 7 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6LUF 
_atom_sites.fract_transf_matrix[1][1]    0.012357 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006488 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005153 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 ADP A 1 401 604 ADP ADP . 
I 2 ADP B 1 401 604 ADP ADP . 
J 2 ADP C 1 401 604 ADP ADP . 
K 2 ADP D 1 401 604 ADP ADP . 
L 2 ADP E 1 401 604 ADP ADP . 
M 2 ADP F 1 401 604 ADP ADP . 
N 2 ADP G 1 401 604 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . K 2 17.02 11.501 27.777 1 149.76 ? PB ADP 401 D 1 
HETATM 2 O O1B ADP . . . K 2 15.914 12.313 27.133 1 147.74 ? O1B ADP 401 D 1 
HETATM 3 O O2B ADP . . . K 2 18.411 11.831 27.282 1 152.5 ? O2B ADP 401 D 1 
HETATM 4 O O3B ADP . . . K 2 16.727 10.019 27.811 1 148.24 ? O3B ADP 401 D 1 
HETATM 5 P PA ADP . . . K 2 17.622 10.975 30.486 1 193.92 ? PA ADP 401 D 1 
HETATM 6 O O1A ADP . . . K 2 16.897 9.658 30.405 1 191.4 ? O1A ADP 401 D 1 
HETATM 7 O O2A ADP . . . K 2 19.134 10.974 30.458 1 194.72 ? O2A ADP 401 D 1 
HETATM 8 O O3A ADP . . . K 2 17.037 11.95 29.333 1 219.01 ? O3A ADP 401 D 1 
HETATM 9 O O5' ADP . . . K 2 17.184 11.637 31.886 1 105.79 ? O5' ADP 401 D 1 
HETATM 10 C C5' ADP . . . K 2 16.689 10.806 32.937 1 106.61 ? C5' ADP 401 D 1 
HETATM 11 C C4' ADP . . . K 2 17.264 11.214 34.294 1 106.95 ? C4' ADP 401 D 1 
HETATM 12 O O4' ADP . . . K 2 16.517 10.599 35.34 1 105.71 ? O4' ADP 401 D 1 
HETATM 13 C C3' ADP . . . K 2 18.677 10.712 34.498 1 107.76 ? C3' ADP 401 D 1 
HETATM 14 O O3' ADP . . . K 2 19.291 11.499 35.517 1 107.88 ? O3' ADP 401 D 1 
HETATM 15 C C2' ADP . . . K 2 18.49 9.319 35.047 1 107.28 ? C2' ADP 401 D 1 
HETATM 16 O O2' ADP . . . K 2 19.563 8.992 35.933 1 106.83 ? O2' ADP 401 D 1 
HETATM 17 C C1' ADP . . . K 2 17.175 9.415 35.803 1 106.72 ? C1' ADP 401 D 1 
HETATM 18 N N9 ADP . . . K 2 16.236 8.31 35.502 1 109.21 ? N9 ADP 401 D 1 
HETATM 19 C C8 ADP . . . K 2 15.131 8.482 34.758 1 112.78 ? C8 ADP 401 D 1 
HETATM 20 N N7 ADP . . . K 2 14.422 7.332 34.647 1 110.13 ? N7 ADP 401 D 1 
HETATM 21 C C5 ADP . . . K 2 15.087 6.393 35.336 1 105.47 ? C5 ADP 401 D 1 
HETATM 22 C C6 ADP . . . K 2 14.883 4.956 35.613 1 101.57 ? C6 ADP 401 D 1 
HETATM 23 N N6 ADP . . . K 2 13.8 4.309 35.116 1 100.51 ? N6 ADP 401 D 1 
HETATM 24 N N1 ADP . . . K 2 15.801 4.317 36.373 1 102.61 ? N1 ADP 401 D 1 
HETATM 25 C C2 ADP . . . K 2 16.872 4.965 36.865 1 105.3 ? C2 ADP 401 D 1 
HETATM 26 N N3 ADP . . . K 2 17.124 6.273 36.652 1 106.71 ? N3 ADP 401 D 1 
HETATM 27 C C4 ADP . . . K 2 16.281 7.035 35.908 1 106.9 ? C4 ADP 401 D 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           373 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#